Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Forward (+)

33371608 .. 33372828

Gene Structure 1221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1261100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAAGCGCAAGAAATGGTCGGAGCTCGAAGAACAGACCCTTCTCACCAACTACTCGGACCTCCACAGCTCTGGAGCTCTAGCCAAGCTCAAAACCCGCGAGAAAAAGTTCAAGCCCATAGCCGACCACGTGAACTTGGCGCACCACCTCCGCGACCCAGTGACCTTTCCGTTCCGGTGGTCCTGGCGCGACGTCTCAATCAAGGTGCAGAACATGCGACACCAGTACCTGGGCGTGAAGCAGAAGATCCGGGTGTCCAAGGACGAATTCAACTGGAAAGACGGCGAAAACCACTGGGAAAATTTCTTGAGGTACAAGGAAGTGTTTGGGGATGTGGAGCTTGATGTTAGGGGGAAAAGGGGGTGTGAAAGTGAGAACCTTGATGTTTTTGGGGATTGTGGGGATTTGGGGTTTGGGATTGACTGTGACGATTTGGAAGAAGAAGAAGACGATGAAGATGGAGAGCAGTTAGAAGAAGGTGAAGATGGAGAAGAAGAGGAGAGTAGTGGCGGCGGCGATGGCGACAATGGTGTTGAGGAATTGGGTATTAGTGAAGGTGGTGAACTTGTGGGTGAGAGGGCAATTGGGGAAGTGGGTTTTGCTCAGAAAAGGAAATTGGGTAAGGTTGGATTGCATAAGAGGTTGGGGTTGGTGAGTGCACAAGTTTTGGATTTGAGGGATGTAGTGGTGAAGAGGGAAGAGAGGAGGAGAGAGAGGGAGTGTAGGAGAGAGAAAAGTGAGGTTGAGAGAGAGGAAAAGAGGAAAGAAATTGAGTTTAGGAGAGAGAAAATAAGGAATGAGAGGGAGGACTGGTTGGAGGATAGAGAATTGGAGTTAGAAGAGAGGGAGGTGATGTGGGCAAGAAGAGAATTCGACAAAAGGTTGAAGATGGAGAGGGAGCTGGACGACGAGCGATGGAGGAGGATGAGGATGGAGGAGAAGAGGGAGGAGGAGGAGTTGGAGTGGAGGGAGAGGATGGTGGGTTTGCAAATTGAGCATGAGAAGCAAATGATGCAAATGCATGCTGAGGCGTGCCAGAATCAAATGCAGATTCTTGGGGTCATGGCGAGGCTAGTTTGTCAATCTTTTGGGTCTGTGAACGATGGGCTGGGAGGCAGTTTAGGGTCATTGCCGCCTCAGGTTTTGCAGAATTTACAGCATCCAGGGGATTTGGGCGACAATGGGAAGCCGGAGGACAATTCCCCTTCTGAGTTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

407

Amino Acids

47.63

Weight (kDa)

4.97

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccII	CGCG	3 cut(s)	99, 153, 189
AciI	CCGC	5 cut(s)	97, 151, 510, 513, 1133
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	4 cut(s)	266, 301, 869, 1150
AcvI	CACGTG	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	227, 314
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	112, 271, 886
AjnI	CCWGG	3 cut(s)	182, 228, 1162
AjuI	GAANNNNNNNTTGG	4 cut(s)	251, 283, 599, 631
AluBI	AGCT	6 cut(s)	25, 69, 77, 88, 340, 901
AluI	AGCT	6 cut(s)	25, 69, 77, 88, 340, 901
Alw21I	GWGCWC	3 cut(s)	27, 79, 661
Alw26I	GTCTC	1 cut(s)	199
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	657
ApoI	RAATTY	4 cut(s)	266, 301, 869, 1150
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	9, 142, 189
AspS9I	GGNCC	2 cut(s)	58, 180
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	7 cut(s)	37, 491, 572, 584, 664, 700, 862
AvaII	GGWCC	2 cut(s)	58, 180
AxyI	CCTNAGG	1 cut(s)	1137
BaeGI	GKGCMC	1 cut(s)	661
BaeI	ACNNNNGTAYC	2 cut(s)	209, 242
BanII	GRGCYC	2 cut(s)	27, 79
BbrPI	CACGTG	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	3 cut(s)	27, 79, 661
BbvCI	CCTCAGC	1 cut(s)	1026
BccI	CCATC	8 cut(s)	452, 479, 512, 883, 909, 925, 970, 1097
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	3 cut(s)	184, 230, 1164
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	80, 1073
BisI	GCNGC	3 cut(s)	511, 514, 1133
BlsI	GCNGC	3 cut(s)	512, 515, 1134
Bme1390I	CCNGG	4 cut(s)	184, 230, 251, 1164
Bme18I	GGWCC	2 cut(s)	58, 180
BmgT120I	GGNCC	2 cut(s)	58, 180
BmrFI	CCNGG	4 cut(s)	184, 230, 251, 1164
BmrI	ACTGGG	2 cut(s)	152, 304
BmsI	GCATC	2 cut(s)	1002, 1168
BmuI	ACTGGG	2 cut(s)	152, 304
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	1026
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	229, 258, 1163
BsaWI	WCCGGW	1 cut(s)	174
BsaXI	ACNNNNNCTCC	8 cut(s)	797, 827, 839, 869, 941, 947, 971, 977
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	5 cut(s)	158, 223, 278, 299, 815
Bse21I	CCTNAGG	1 cut(s)	1137
Bse3DI	GCAATG	1 cut(s)	1127
BseBI	CCWGG	3 cut(s)	184, 230, 1164
BseDI	CCNNGG	3 cut(s)	229, 258, 1163
BseGI	GGATG	6 cut(s)	337, 685, 930, 936, 981, 1159
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	1127
BseMII	CTCAG	4 cut(s)	617, 1017, 1151, 1200
BseNI	ACTGG	5 cut(s)	158, 223, 278, 299, 815
BseRI	GAGGAG	8 cut(s)	512, 718, 721, 934, 950, 962, 965, 968
BseSI	GKGCMC	1 cut(s)	661
BseYI	CCCAGC	1 cut(s)	1108
BsgI	GTGCAG	1 cut(s)	227
Bsh1236I	CGCG	3 cut(s)	99, 153, 189
BsiHKAI	GWGCWC	3 cut(s)	27, 79, 661
BsiSI	CCGG	3 cut(s)	175, 250, 1190
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	3 cut(s)	27, 79, 661
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	5 cut(s)	97, 151, 510, 513, 1133
BspCNI	CTCAG	4 cut(s)	616, 1018, 1150, 1201
BspFNI	CGCG	3 cut(s)	99, 153, 189
BspPI	GGATC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	1127
BsrI	ACTGG	5 cut(s)	158, 223, 278, 299, 815
BssECI	CCNNGG	3 cut(s)	229, 258, 1163
BssMI	GATC	1 cut(s)	246
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	3 cut(s)	184, 230, 1164
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	6 cut(s)	489, 686, 693, 834, 859, 935
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	2 cut(s)	214, 1012
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	1023, 1033
BstDEI	CTNAG	4 cut(s)	603, 1026, 1137, 1209
BstF5I	GGATG	6 cut(s)	337, 685, 930, 936, 981, 1159
BstFNI	CGCG	3 cut(s)	99, 153, 189
BstHHI	GCGC	3 cut(s)	9, 142, 189
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	5 cut(s)	214, 519, 994, 1003, 1012
BstNI	CCWGG	3 cut(s)	184, 230, 1164
BstNSI	RCATGY	2 cut(s)	217, 1025
BstSCI	CCNGG	4 cut(s)	182, 228, 249, 1162
BstSLI	GKGCMC	1 cut(s)	661
BstUI	CGCG	3 cut(s)	99, 153, 189
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	246
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	1137
BtgZI	GCGATG	2 cut(s)	531, 928
BtsCI	GGATG	6 cut(s)	337, 685, 930, 936, 981, 1159
BtsIMutI	CAGTG	2 cut(s)	165, 292
Cac8I	GCNNGC	2 cut(s)	1023, 1033
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	3 cut(s)	9, 142, 189
Cfr13I	GGNCC	2 cut(s)	58, 180
Csp6I	GTAC	2 cut(s)	226, 313
CviAII	CATG	4 cut(s)	214, 998, 1022, 1063
CviQI	GTAC	2 cut(s)	226, 313
DdeI	CTNAG	4 cut(s)	603, 1026, 1137, 1209
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	6 cut(s)	489, 686, 693, 834, 859, 935
EarI	CTCTTC	6 cut(s)	489, 686, 693, 834, 859, 935
Ecl136II	GAGCTC	2 cut(s)	25, 77
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	2 cut(s)	27, 79
Eco47I	GGWCC	2 cut(s)	58, 180
Eco53kI	GAGCTC	2 cut(s)	25, 77
Eco72I	CACGTG	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	1137
EcoICRI	GAGCTC	2 cut(s)	25, 77
EcoRI	GAATTC	2 cut(s)	266, 869
EcoRII	CCWGG	3 cut(s)	182, 228, 1162
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	1023
EcoT38I	GRGCYC	2 cut(s)	27, 79
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	4 cut(s)	217, 1001, 1025, 1066
FaiI	YATR	6 cut(s)	119, 215, 636, 999, 1023, 1064
FatI	CATG	4 cut(s)	213, 997, 1021, 1062
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	511, 514, 1133
FokI	GGATG	6 cut(s)	344, 692, 937, 943, 988, 1146
FriOI	GRGCYC	2 cut(s)	27, 79
Fsp4HI	GCNGC	3 cut(s)	511, 514, 1133
FspBI	CTAG	2 cut(s)	80, 1073
GlaI	GCGC	3 cut(s)	8, 141, 188
GluI	GCNGC	3 cut(s)	511, 514, 1133
GsaI	CCCAGC	1 cut(s)	1112
GsuI	CTGGAG	1 cut(s)	93
HapII	CCGG	3 cut(s)	175, 250, 1190
HhaI	GCGC	3 cut(s)	9, 142, 189
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	217, 1001, 1025, 1066
Hin6I	GCGC	3 cut(s)	7, 140, 187
HinP1I	GCGC	3 cut(s)	7, 140, 187
HinfI	GANTC	2 cut(s)	1039, 1051
HpaII	CCGG	3 cut(s)	175, 250, 1190
HphI	GGTGA	7 cut(s)	37, 491, 572, 584, 664, 700, 862
Hpy166II	GTNNAC	4 cut(s)	133, 563, 659, 1099
Hpy188I	TCNGA	4 cut(s)	22, 58, 606, 1210
Hpy188III	TCNNGA	2 cut(s)	72, 307
Hpy8I	GTNNAC	4 cut(s)	133, 563, 659, 1099
Hpy99I	CGWCG	2 cut(s)	194, 911
HpyAV	CCTTC	4 cut(s)	50, 470, 548, 1215
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	2 cut(s)	129, 192
HpyCH4V	TGCA	8 cut(s)	208, 634, 659, 988, 1015, 1021, 1048, 1147
HpyF10VI	GCNNNNNNNGC	5 cut(s)	214, 519, 994, 1003, 1012
HpyF3I	CTNAG	4 cut(s)	603, 1026, 1137, 1209
HpySE526I	ACGT	2 cut(s)	129, 192
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	217, 1001, 1025, 1066
HspAI	GCGC	3 cut(s)	7, 140, 187
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	4 cut(s)	22, 74, 337, 898
LweI	GCATC	2 cut(s)	1002, 1168
MaeI	CTAG	2 cut(s)	80, 1073
MaeII	ACGT	2 cut(s)	129, 192
MaeIII	GTNAC	2 cut(s)	160, 425
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	3 cut(s)	27, 79, 661
MmeI	TCCRAC	3 cut(s)	607, 795, 939
Mph1103I	ATGCAT	1 cut(s)	1023
MroXI	GAANNNNTTC	1 cut(s)	107
MspI	CCGG	3 cut(s)	175, 250, 1190
MspR9I	CCNGG	4 cut(s)	184, 230, 251, 1164
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	3 cut(s)	184, 230, 1164
MvnI	CGCG	3 cut(s)	99, 153, 189
MwoI	GCNNNNNNNGC	5 cut(s)	214, 519, 994, 1003, 1012
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	4 cut(s)	217, 1001, 1025, 1066
NmuCI	GTSAC	2 cut(s)	160, 425
NsiI	ATGCAT	1 cut(s)	1023
NspI	RCATGY	2 cut(s)	217, 1025
PaeI	GCATGC	1 cut(s)	1025
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	1039, 1051
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	512, 515, 1134
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	130
Psp124BI	GAGCTC	2 cut(s)	27, 79
Psp6I	CCWGG	3 cut(s)	182, 228, 1162
PspCI	CACGTG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	1108
PspGI	CCWGG	3 cut(s)	182, 228, 1162
PspPI	GGNCC	2 cut(s)	58, 180
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	2 cut(s)	227, 314
RsaNI	GTAC	2 cut(s)	226, 313
SacI	GAGCTC	2 cut(s)	27, 79
SatI	GCNGC	3 cut(s)	511, 514, 1133
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	2 cut(s)	58, 180
ScrFI	CCNGG	4 cut(s)	184, 230, 251, 1164
SduI	GDGCHC	3 cut(s)	27, 79, 661
SfaNI	GCATC	2 cut(s)	1002, 1168
SinI	GGWCC	2 cut(s)	58, 180
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SphI	GCATGC	1 cut(s)	1025
SsiI	CCGC	5 cut(s)	97, 151, 510, 513, 1133
SspMI	CTAG	2 cut(s)	80, 1073
SstI	GAGCTC	2 cut(s)	27, 79
StyD4I	CCNGG	4 cut(s)	182, 228, 249, 1162
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	2 cut(s)	132, 195
TaqI	TCGA	2 cut(s)	27, 873
TauI	GCSGC	3 cut(s)	513, 516, 1135
TfiI	GAWTC	2 cut(s)	1039, 1051
TscAI	CASTG	2 cut(s)	165, 299
TseFI	GTSAC	2 cut(s)	160, 425
Tsp45I	GTSAC	2 cut(s)	160, 425
TspDTI	ATGAA	2 cut(s)	17, 468
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	165, 299
Van91I	CCANNNNNTGG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	657
VpaK11BI	GGWCC	2 cut(s)	58, 180
XapI	RAATTY	4 cut(s)	266, 301, 869, 1150
XceI	RCATGY	2 cut(s)	217, 1025
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	2 cut(s)	80, 1073
ZraI	GACGTC	1 cut(s)	193
Zsp2I	ATGCAT	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.