Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012130.1

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Reverse (-)

2187 .. 8903

Gene Structure 6717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012130.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

atgcgccaccagtacctgggtgtcaagcagaagatccgggtatccaaggacgagttcaactggaaggatggtgaaaatcactgggagaatttcttgaagtacaaggaagtgtttggtgacgtggagcttgatggtaagggcaagaggtcgtgtgaaaatgacaactttgatgtttttggggattgtggggacttggggtttggtattgattgtgaggatttagaggaaggagaagatgatgaagaagaagaagaacatttggaagaagaagaagaaggtggtactggtggtgatgacgataatcgtggcgaggaattgggtaaaactgaaattggtgagtttgggggtgaaagggaaattggggacatgggaatggctcaaaaaaggaaattgagtaaggttggattgcataggaggttggggttgatgagtgctcagatgttggacttgcagaatatggttgtgaagagggaagaggggaggagagagaaaggtgaggctgagagagaggaaaggaggaaagaagttgagtttaggagagagaagaggaggaatgagcaggaggacttgttagaagatagagaattggagttgcaagagagagaggccatgtggacaagaagggagtttgagaaacggttgaggttacagggggagtttgatgaggagcgtcagaggaggatgaggatggaggagaggagggaggaggaggagttggaggggcgggagaggatggtaggtttgcaaattcagcatgagaagcaaatgatgcaaatccatgctgaggcatgccagaaccaaatgcagattcttggggtcatggctaggtttgttggtggcggaatgatgaaggttggcctagtgaaaagaaagacgccttcagaactgagagtgggggctaaagactcgatgaacttaggagatcgaatttgtcttcctagttctgtgaaagagttccctgatgataaacaagaagagggacattgtagtgaagaagaagttaagtttattcgtagtctcgtgttgtataaggatccagctattgtcgtcatcaataaacctcctggattgcctgttcagggtggtattggaatcaaaaggagtttagatgaactggctgccacttgtttaagttacggcttttcagaaccccctcgtctggtggtggtagacaatggtaaatcagataggatcaccattgtgaataaggcacaatgttttccatctcaacatgcacttacaaagtacgaagtgattggatcatcatgtcctgatgagaaagagcagttactgatattggtttgccaaatcaagtttgataaggaaattgaattcaagagggagttcccaccaggtgagataatggtaatgccgctggatgccactgttggacagctaaaacagttagctgagtgtcctgaggaatacatatcaaagggttggagggatcagatgatatggaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

488

Amino Acids

56.59

Weight (kDa)

4.96

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	1170
AciI	CCGC	3 cut(s)	724, 840, 1373
AclWI	GGATC	6 cut(s)	28, 1028, 1041, 1199, 1267, 1455
AcsI	RAATTY	4 cut(s)	88, 747, 927, 1331
AcuI	CTGAAG	1 cut(s)	864
AcyI	GRCGYC	1 cut(s)	875
AdeI	CACNNNGTG	1 cut(s)	1355
AfaI	GTAC	4 cut(s)	14, 101, 283, 1247
AfiI	CCNNNNNNNGG	4 cut(s)	16, 784, 1079, 1159
AgsI	TTSAA	4 cut(s)	58, 97, 1331, 1336
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	3 cut(s)	15, 1063, 1351
AjuI	GAANNNNNNNTTGG	6 cut(s)	38, 70, 342, 374, 792, 824
AleI	CACNNNNGTG	1 cut(s)	1199
AloI	GAACNNNNNNTCC	2 cut(s)	1059, 1091
AluBI	AGCT	4 cut(s)	127, 1040, 1396, 1409
AluI	AGCT	4 cut(s)	127, 1040, 1396, 1409
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	1022
AlwI	GGATC	6 cut(s)	28, 1028, 1041, 1199, 1267, 1455
AlwNI	CAGNNNCTG	2 cut(s)	16, 1291
AoxI	GGCC	2 cut(s)	606, 856
ApeKI	GCWGC	1 cut(s)	1118
ApoI	RAATTY	4 cut(s)	88, 747, 927, 1331
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
Asp700I	GAANNNNTTC	1 cut(s)	953
AspLEI	GCGC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	8 cut(s)	83, 128, 302, 347, 359, 506, 1186, 1367
AxyI	CCTNAGG	1 cut(s)	1419
BamHI	GGATCC	1 cut(s)	1033
BauI	CACGAG	1 cut(s)	1019
BbsI	GAAGAC	1 cut(s)	926
Bbv12I	GWGCWC	1 cut(s)	436
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	1 cut(s)	1105
BccI	CCATC	5 cut(s)	62, 125, 682, 727, 1231
BceAI	ACGGC	1 cut(s)	1153
BciT130I	CCWGG	3 cut(s)	17, 1065, 1353
BciVI	GTATCC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	1022
BfaI	CTAG	3 cut(s)	825, 860, 939
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	1119, 1373
BlsI	GCNGC	2 cut(s)	1120, 1374
Bme1390I	CCNGG	4 cut(s)	17, 38, 1065, 1353
BmgBI	CACGTC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	1035
BmrFI	CCNGG	4 cut(s)	17, 38, 1065, 1353
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	2 cut(s)	759, 1369
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	926
Bpu10I	CCTNAGC	1 cut(s)	783
BpuMI	CCSGG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	773
BsaHI	GRCGYC	1 cut(s)	875
BsaJI	CCNNGG	2 cut(s)	16, 45
BsaXI	ACNNNNNCTCC	4 cut(s)	554, 584, 698, 728
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 784, 1079, 1159
Bse1I	ACTGG	5 cut(s)	10, 65, 86, 289, 1119
Bse21I	CCTNAGG	1 cut(s)	1419
Bse8I	GATNNNNATC	1 cut(s)	773
BseBI	CCWGG	3 cut(s)	17, 1065, 1353
BseDI	CCNNGG	2 cut(s)	16, 45
BseGI	GGATG	5 cut(s)	73, 687, 693, 738, 1384
BseJI	GATNNNNATC	1 cut(s)	773
BseLI	CCNNNNNNNGG	4 cut(s)	16, 784, 1079, 1159
BseMII	CTCAG	6 cut(s)	449, 492, 774, 878, 1401, 1410
BseNI	ACTGG	5 cut(s)	10, 65, 86, 289, 1119
BseRI	GAGGAG	9 cut(s)	496, 562, 680, 691, 707, 712, 719, 722, 725
BseXI	GCAGC	1 cut(s)	1105
BshFI	GGCC	2 cut(s)	608, 858
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	37
BslFI	GGGAC	3 cut(s)	203, 377, 993
BslI	CCNNNNNNNGG	4 cut(s)	16, 784, 1079, 1159
BsmAI	GTCTC	1 cut(s)	1022
BsmFI	GGGAC	3 cut(s)	203, 377, 993
BsnI	GGCC	2 cut(s)	608, 858
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	6 cut(s)	33, 922, 1033, 1191, 1259, 1447
BspACI	CCGC	3 cut(s)	724, 840, 1373
BspANI	GGCC	2 cut(s)	608, 858
BspCNI	CTCAG	6 cut(s)	448, 493, 775, 879, 1402, 1411
BspLI	GGNNCC	1 cut(s)	1035
BspPI	GGATC	6 cut(s)	28, 1028, 1041, 1199, 1267, 1455
BsrI	ACTGG	5 cut(s)	10, 65, 86, 289, 1119
BssECI	CCNNGG	2 cut(s)	16, 45
BssMI	GATC	6 cut(s)	33, 922, 1033, 1191, 1259, 1447
BssNI	GRCGYC	1 cut(s)	875
BssSI	CACGAG	1 cut(s)	1019
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	1019
Bst2UI	CCWGG	3 cut(s)	17, 1065, 1353
Bst4CI	ACNGT	3 cut(s)	639, 1387, 1404
Bst6I	CTCTTC	4 cut(s)	461, 468, 539, 969
BstACI	GRCGYC	1 cut(s)	875
BstAPI	GCANNNNNTGC	1 cut(s)	769
BstC8I	GCNNGC	1 cut(s)	790
BstDEI	CTNAG	7 cut(s)	435, 501, 783, 887, 916, 1410, 1419
BstF5I	GGATG	5 cut(s)	73, 687, 693, 738, 1384
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	6 cut(s)	36, 925, 1036, 1194, 1262, 1450
BstMAI	GTCTC	1 cut(s)	1022
BstMBI	GATC	6 cut(s)	33, 922, 1033, 1191, 1259, 1447
BstMWI	GCNNNNNNNGC	3 cut(s)	751, 760, 769
BstNI	CCWGG	3 cut(s)	17, 1065, 1353
BstNSI	RCATGY	2 cut(s)	792, 1235
BstSCI	CCNGG	4 cut(s)	15, 36, 1063, 1351
BstV1I	GCAGC	1 cut(s)	1105
BstV2I	GAAGAC	1 cut(s)	926
BstX2I	RGATCY	2 cut(s)	33, 1033
BstYI	RGATCY	2 cut(s)	33, 1033
Bsu36I	CCTNAGG	1 cut(s)	1419
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	608, 858
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	5 cut(s)	73, 687, 693, 738, 1384
BtsIMutI	CAGTG	2 cut(s)	79, 1383
Cac8I	GCNNGC	1 cut(s)	790
CaiI	CAGNNNCTG	2 cut(s)	16, 1291
CfoI	GCGC	1 cut(s)	6
CseI	GACGC	2 cut(s)	659, 883
CsiI	ACCWGGT	1 cut(s)	1351
Csp6I	GTAC	4 cut(s)	13, 100, 282, 1246
CviAII	CATG	8 cut(s)	367, 610, 755, 779, 789, 820, 1232, 1266
CviQI	GTAC	4 cut(s)	13, 100, 282, 1246
DdeI	CTNAG	7 cut(s)	435, 501, 783, 887, 916, 1410, 1419
DpnI	GATC	6 cut(s)	35, 924, 1035, 1193, 1261, 1449
DpnII	GATC	6 cut(s)	33, 922, 1033, 1191, 1259, 1447
DraIII	CACNNNGTG	1 cut(s)	1355
Eam1104I	CTCTTC	4 cut(s)	461, 468, 539, 969
EarI	CTCTTC	4 cut(s)	461, 468, 539, 969
EciI	GGCGGA	1 cut(s)	855
Eco130I	CCWWGG	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	864
Eco81I	CCTNAGG	1 cut(s)	1419
EcoRI	GAATTC	1 cut(s)	1331
EcoRII	CCWGG	3 cut(s)	15, 1063, 1351
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	8 cut(s)	370, 613, 758, 782, 792, 823, 1235, 1269
FaqI	GGGAC	3 cut(s)	203, 377, 993
FatI	CATG	8 cut(s)	366, 609, 754, 778, 788, 819, 1231, 1265
FauI	CCCGC	1 cut(s)	717
FblI	GTMKAC	1 cut(s)	1170
Fnu4HI	GCNGC	2 cut(s)	1119, 1373
FokI	GGATG	5 cut(s)	80, 694, 700, 745, 1391
Fsp4HI	GCNGC	2 cut(s)	1119, 1373
FspBI	CTAG	3 cut(s)	825, 860, 939
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	1119, 1373
HaeIII	GGCC	2 cut(s)	608, 858
HapII	CCGG	1 cut(s)	37
HgaI	GACGC	2 cut(s)	659, 883
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	875
Hin1II	CATG	8 cut(s)	370, 613, 758, 782, 792, 823, 1235, 1269
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	3 cut(s)	808, 905, 1092
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	8 cut(s)	83, 128, 302, 347, 359, 506, 1186, 1367
Hpy166II	GTNNAC	2 cut(s)	615, 1171
Hpy188I	TCNGA	6 cut(s)	438, 675, 883, 1147, 1186, 1452
Hpy188III	TCNNGA	4 cut(s)	94, 1271, 1336, 1418
Hpy8I	GTNNAC	2 cut(s)	615, 1171
HpyAV	CCTTC	6 cut(s)	58, 221, 269, 615, 844, 888
HpyCH4III	ACNGT	3 cut(s)	639, 1387, 1404
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	7 cut(s)	409, 451, 595, 745, 772, 805, 1235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	751, 760, 769
HpyF3I	CTNAG	7 cut(s)	435, 501, 783, 887, 916, 1410, 1419
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	875
Hsp92II	CATG	8 cut(s)	370, 613, 758, 782, 792, 823, 1235, 1269
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	6 cut(s)	33, 922, 1033, 1191, 1259, 1447
LmnI	GCTCC	2 cut(s)	124, 667
Lsp1109I	GCAGC	1 cut(s)	1105
LweI	GCATC	2 cut(s)	759, 1369
MabI	ACCWGGT	1 cut(s)	1351
MaeI	CTAG	3 cut(s)	825, 860, 939
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	4 cut(s)	116, 645, 1133, 1287
MalI	GATC	6 cut(s)	35, 924, 1035, 1193, 1261, 1449
MboI	GATC	6 cut(s)	33, 922, 1033, 1191, 1259, 1447
MflI	RGATCY	2 cut(s)	33, 1033
MhlI	GDGCHC	1 cut(s)	436
MlyI	GAGTC	1 cut(s)	899
MmeI	TCCRAC	5 cut(s)	382, 423, 696, 1369, 1421
MroXI	GAANNNNTTC	1 cut(s)	953
MseI	TTAA	2 cut(s)	1002, 1130
MslI	CAYNNNNRTG	3 cut(s)	371, 987, 1199
MspA1I	CMGCKG	1 cut(s)	1375
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	4 cut(s)	17, 38, 1065, 1353
MvaI	CCWGG	3 cut(s)	17, 1065, 1353
MwoI	GCNNNNNNNGC	3 cut(s)	751, 760, 769
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	6 cut(s)	33, 922, 1033, 1191, 1259, 1447
NlaIII	CATG	8 cut(s)	370, 613, 758, 782, 792, 823, 1235, 1269
NlaIV	GGNNCC	1 cut(s)	1035
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	2 cut(s)	792, 1235
OliI	CACNNNNGTG	1 cut(s)	1199
PaeI	GCATGC	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	953
PfeI	GAWTC	2 cut(s)	808, 1092
PflMI	CCANNNNNTGG	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	1063
PkrI	GCNGC	2 cut(s)	1120, 1374
PleI	GAGTC	1 cut(s)	899
PpsI	GAGTC	1 cut(s)	899
Psp6I	CCWGG	3 cut(s)	15, 1063, 1351
PspGI	CCWGG	3 cut(s)	15, 1063, 1351
PspN4I	GGNNCC	1 cut(s)	1035
PstNI	CAGNNNCTG	2 cut(s)	16, 1291
PsuI	RGATCY	2 cut(s)	33, 1033
RsaI	GTAC	4 cut(s)	14, 101, 283, 1247
RsaNI	GTAC	4 cut(s)	13, 100, 282, 1246
RseI	CAYNNNNRTG	3 cut(s)	371, 987, 1199
SaqAI	TTAA	2 cut(s)	1002, 1130
SatI	GCNGC	2 cut(s)	1119, 1373
Sau3AI	GATC	6 cut(s)	33, 922, 1033, 1191, 1259, 1447
SchI	GAGTC	1 cut(s)	899
ScrFI	CCNGG	4 cut(s)	17, 38, 1065, 1353
SduI	GDGCHC	1 cut(s)	436
SexAI	ACCWGGT	1 cut(s)	1351
SfaNI	GCATC	2 cut(s)	759, 1369
SmiMI	CAYNNNNRTG	3 cut(s)	371, 987, 1199
SphI	GCATGC	1 cut(s)	792
SsiI	CCGC	3 cut(s)	724, 840, 1373
SspMI	CTAG	3 cut(s)	825, 860, 939
StyD4I	CCNGG	4 cut(s)	15, 36, 1063, 1351
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	639, 1387, 1404
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	908, 925
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	1375
TfiI	GAWTC	2 cut(s)	808, 1092
Tru1I	TTAA	2 cut(s)	1002, 1130
Tru9I	TTAA	2 cut(s)	1002, 1130
TscAI	CASTG	2 cut(s)	86, 1390
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	1118
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	255, 863, 926, 1125
TspRI	CASTG	2 cut(s)	86, 1390
Van91I	CCANNNNNTGG	1 cut(s)	16
XapI	RAATTY	4 cut(s)	88, 747, 927, 1331
XceI	RCATGY	2 cut(s)	792, 1235
XmiI	GTMKAC	1 cut(s)	1170
XmnI	GAANNNNTTC	1 cut(s)	953
XspI	CTAG	3 cut(s)	825, 860, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.