Rh1CG126900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003279
Physical Location & Seq
Reverse (-)
27974293 .. 27976068
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG126900.1

Sequence Viewer

Length: 198 bp
ATGCGCCACCAGTACCTGGGAGTCACGCAGAAAATCCGGGTCTCCAAGGACAAGTTCAACTGGAAGGATGGTGAAAATCACTGGGAGAATTTTTTGAAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGATGCCTTTTCCACTAGCATCTTCATCGGTTTCTCATCATTCAGTACTGAGGATCACACAACCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.71

Weight (kDa)

5.82

Isoelectric Point (pI)

6.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 3 cut(s) 14, 101, 175
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 58, 97
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 16
ApoI RAATTY 1 cut(s) 88
AspLEI GCGC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 83, 128
BccI CCATC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 1 cut(s) 17
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 144
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 2 cut(s) 17, 38
BmrFI CCNGG 2 cut(s) 17, 38
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 2 cut(s) 121, 156
BmuI ACTGGG 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 16, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 3 cut(s) 10, 65, 86
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 16, 45
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 3 cut(s) 10, 65, 86
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 169
BspPI GGATC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 46
BsrI ACTGG 3 cut(s) 10, 65, 86
BssECI CCNNGG 2 cut(s) 16, 45
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 2 cut(s) 15, 36
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 6
Csp6I GTAC 3 cut(s) 13, 100, 174
CviJI RGCY 1 cut(s) 127
CviKI_1 RGCY 1 cut(s) 127
CviQI GTAC 3 cut(s) 13, 100, 174
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FokI GGATG 1 cut(s) 80
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 5
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 21
HpaII CCGG 1 cut(s) 37
HphI GGTGA 2 cut(s) 83, 128
HpyAV CCTTC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 177
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 6 cut(s) 2, 23, 29, 46, 50, 67
LweI GCATC 2 cut(s) 121, 156
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 1 cut(s) 142
MluCI AATT 1 cut(s) 88
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 1 cut(s) 172
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 17, 38
MvaI CCWGG 1 cut(s) 17
NciI CCSGG 1 cut(s) 38
NdeII GATC 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 16
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PstNI CAGNNNCTG 1 cut(s) 16
RsaI GTAC 3 cut(s) 14, 101, 175
RsaNI GTAC 3 cut(s) 13, 100, 174
Sau3AI GATC 1 cut(s) 181
ScaI AGTACT 1 cut(s) 175
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 2 cut(s) 17, 38
SetI ASST 2 cut(s) 18, 129
SfaNI GCATC 2 cut(s) 121, 156
Sse9I AATT 1 cut(s) 88
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 15, 36
StyI CCWWGG 1 cut(s) 45
TasI AATT 1 cut(s) 88
TatI WGTACW 2 cut(s) 99, 173
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 142
TspRI CASTG 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 16
XapI RAATTY 1 cut(s) 88
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.