RLG00000029601

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003279
Physical Location & Seq
Forward (+)
40988162 .. 40989195
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029601

Sequence Viewer

Length: 972 bp
ATGGTCCTGGCGCGACGTGTCAATCAAGGTCCAAAACATGCGCCACCAGTACCTGGGTGTCAAGCGAAGATCCGGATCTCTAAGGATGAGTTCAACTGGAAGGATGGTGAAAATCACTGGGAGAATTTCTTGAAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGATGGGTTTGGTATTGATTGTGAGGATTTAGAGGAAGAAGATGATGATGAAGAAGAAGAAGAACATTTGGAAGAAGAAGAAGAAGAAGATGGCACTGGTGGTGATGACGATAATCGTGGCAAGGAATTGGGTAAAACTGAAGTTGGTGAGTTTGGGGGTGAAAGGGAAATTGGGGACATGCGAATGGCTCAAAAAAGGAAATCGAGTAAGGTTGGATTGCATAGGAGGTTGGCGTTGATGAATGCTCAGGTGTTGGACTTGCAGAATATGGTTGTGAAGAGGGAAGAGGGGAGGAGAGACAGGGAGTTTAGGAGAGAGAAAGGTGAGACTGAGAGAGAGGAAAGGAGGAAAGAAGTTGAGTTTAGGAGAGAGAAGAGGAGGAATGAGCAGGAGGACTCGTTAGAAGATAGAGAATTGGAGTTGCAAGAGAGAGAGGTCATGTGGACAAGAAGGGAGTTTGAGAAACGGTTGAGGTTACAGGGGGAGTTTGATGAGGAGCGTCAGAGGAGGGTGAGGATGGAGGAGAGGAGGGAGGAGGAGGAGTTGGAGTGGCGGGAGAGGATTGTAAGTTTGCAAATTCAGCATGAGAAGCAAATGATGCAAATGCATGCTGAGGCATGCCAGAACCAAATGCAGATTCTTGGGGTCATGGCTAGGTTTGTTTGTCAATTTTTTGGGTCAATGAGTGATGGCCTTGGAGGTGGTTTAGGGACTCTGCCACCGCAAATTTTGCAGAATTTGCAGCATCCAGGCGGACTGGGTGACAATGGGAAGCTGGATTCCAATTCTCCTTCTGAGTTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

38.14

Weight (kDa)

4.86

Isoelectric Point (pI)

71.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 53
AccII CGCG 1 cut(s) 13
AccIII TCCGGA 1 cut(s) 72
AciI CCGC 3 cut(s) 718, 887, 918
AclWI GGATC 2 cut(s) 64, 83
AcsI RAATTY 4 cut(s) 124, 741, 891, 901
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 2 cut(s) 51, 137
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 2 cut(s) 94, 133
AjiI CACGTC 1 cut(s) 17
AjnI CCWGG 3 cut(s) 6, 52, 913
AjuI GAANNNNNNNTTGG 4 cut(s) 318, 350, 786, 818
AluBI AGCT 2 cut(s) 163, 940
AluI AGCT 2 cut(s) 163, 940
Alw26I GTCTC 2 cut(s) 456, 485
AlwI GGATC 2 cut(s) 64, 83
AlwNI CAGNNNCTG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 72
AoxI GGCC 1 cut(s) 856
ApeKI GCWGC 1 cut(s) 907
ApoI RAATTY 4 cut(s) 124, 741, 891, 901
AspLEI GCGC 2 cut(s) 13, 43
AspS9I GGNCC 2 cut(s) 4, 29
AsuHPI GGTGA 8 cut(s) 119, 164, 278, 323, 335, 500, 688, 938
AvaII GGWCC 2 cut(s) 4, 29
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 919
BccI CCATC 5 cut(s) 98, 161, 248, 676, 848
BciT130I CCWGG 3 cut(s) 8, 54, 915
BcoDI GTCTC 2 cut(s) 456, 485
BfaI CTAG 2 cut(s) 819, 970
BisI GCNGC 1 cut(s) 908
BlsI GCNGC 1 cut(s) 909
Bme1390I CCNGG 3 cut(s) 8, 54, 915
Bme18I GGWCC 2 cut(s) 4, 29
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 4, 29
BmrFI CCNGG 3 cut(s) 8, 54, 915
BmrI ACTGGG 2 cut(s) 127, 932
BmsI GCATC 2 cut(s) 753, 919
BmuI ACTGGG 2 cut(s) 127, 932
Bpu10I CCTNAGC 2 cut(s) 411, 777
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 53, 859
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 6 cut(s) 548, 578, 692, 698, 722, 728
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 5 cut(s) 47, 101, 122, 265, 927
Bse8I GATNNNNATC 1 cut(s) 74
BseAI TCCGGA 1 cut(s) 72
BseBI CCWGG 3 cut(s) 8, 54, 915
BseDI CCNNGG 2 cut(s) 53, 859
BseGI GGATG 4 cut(s) 91, 109, 687, 910
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 4 cut(s) 425, 486, 768, 951
BseNI ACTGG 5 cut(s) 47, 101, 122, 265, 927
BseRI GAGGAG 9 cut(s) 472, 556, 674, 685, 701, 706, 713, 716, 719
BseXI GCAGC 1 cut(s) 919
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 858
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 2 cut(s) 353, 889
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 456, 485
BsmFI GGGAC 2 cut(s) 353, 889
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 1 cut(s) 858
Bsp13I TCCGGA 1 cut(s) 72
Bsp143I GATC 2 cut(s) 69, 75
BspACI CCGC 3 cut(s) 718, 887, 918
BspANI GGCC 1 cut(s) 858
BspCNI CTCAG 4 cut(s) 424, 487, 769, 952
BspEI TCCGGA 1 cut(s) 72
BspFNI CGCG 1 cut(s) 13
BspPI GGATC 2 cut(s) 64, 83
BsrI ACTGG 5 cut(s) 47, 101, 122, 265, 927
BssECI CCNNGG 2 cut(s) 53, 859
BssMI GATC 2 cut(s) 69, 75
BssT1I CCWWGG 1 cut(s) 859
Bst2UI CCWGG 3 cut(s) 8, 54, 915
Bst4CI ACNGT 1 cut(s) 633
Bst6I CTCTTC 3 cut(s) 437, 444, 533
BstAPI GCANNNNNTGC 3 cut(s) 763, 895, 904
BstC8I GCNNGC 2 cut(s) 774, 784
BstDEI CTNAG 5 cut(s) 81, 411, 495, 777, 960
BstF5I GGATG 4 cut(s) 91, 109, 687, 910
BstFNI CGCG 1 cut(s) 13
BstHHI GCGC 2 cut(s) 13, 43
BstKTI GATC 2 cut(s) 72, 78
BstMAI GTCTC 2 cut(s) 456, 485
BstMBI GATC 2 cut(s) 69, 75
BstMWI GCNNNNNNNGC 5 cut(s) 745, 754, 763, 895, 904
BstNI CCWGG 3 cut(s) 8, 54, 915
BstNSI RCATGY 4 cut(s) 41, 346, 776, 786
BstSCI CCNGG 3 cut(s) 6, 52, 913
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 919
BstX2I RGATCY 2 cut(s) 69, 75
BstYI RGATCY 2 cut(s) 69, 75
BsuRI GGCC 1 cut(s) 858
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 4 cut(s) 91, 109, 687, 910
BtsIMutI CAGTG 2 cut(s) 115, 258
Cac8I GCNNGC 2 cut(s) 774, 784
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 2 cut(s) 13, 43
Cfr13I GGNCC 2 cut(s) 4, 29
CseI GACGC 1 cut(s) 653
Csp6I GTAC 2 cut(s) 50, 136
CviAII CATG 7 cut(s) 38, 343, 604, 749, 773, 783, 814
CviJI RGCY 5 cut(s) 163, 353, 818, 858, 940
CviKI_1 RGCY 5 cut(s) 163, 353, 818, 858, 940
CviQI GTAC 2 cut(s) 50, 136
DdeI CTNAG 5 cut(s) 81, 411, 495, 777, 960
DpnI GATC 2 cut(s) 71, 77
DpnII GATC 2 cut(s) 69, 75
Eam1104I CTCTTC 3 cut(s) 437, 444, 533
EarI CTCTTC 3 cut(s) 437, 444, 533
EciI GGCGGA 1 cut(s) 933
Eco130I CCWWGG 1 cut(s) 859
Eco47I GGWCC 2 cut(s) 4, 29
Eco57I CTGAAG 1 cut(s) 324
EcoRII CCWGG 3 cut(s) 6, 52, 913
EcoT14I CCWWGG 1 cut(s) 859
EcoT22I ATGCAT 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 859
FaeI CATG 7 cut(s) 41, 346, 607, 752, 776, 786, 817
FaiI YATR 9 cut(s) 39, 344, 387, 434, 605, 750, 774, 784, 815
FaqI GGGAC 2 cut(s) 353, 889
FatI CATG 7 cut(s) 37, 342, 603, 748, 772, 782, 813
FauI CCCGC 1 cut(s) 711
Fnu4HI GCNGC 1 cut(s) 908
FokI GGATG 4 cut(s) 98, 116, 694, 897
Fsp4HI GCNGC 1 cut(s) 908
FspBI CTAG 2 cut(s) 819, 970
GlaI GCGC 2 cut(s) 12, 42
GluI GCNGC 1 cut(s) 908
HaeIII GGCC 1 cut(s) 858
HapII CCGG 1 cut(s) 73
HgaI GACGC 1 cut(s) 653
HhaI GCGC 2 cut(s) 13, 43
Hin1II CATG 7 cut(s) 41, 346, 607, 752, 776, 786, 817
Hin6I GCGC 2 cut(s) 11, 41
HinP1I GCGC 2 cut(s) 11, 41
HinfI GANTC 4 cut(s) 560, 802, 877, 944
HpaII CCGG 1 cut(s) 73
HphI GGTGA 8 cut(s) 119, 164, 278, 323, 335, 500, 688, 938
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 2 cut(s) 669, 961
Hpy188III TCNNGA 2 cut(s) 73, 130
Hpy8I GTNNAC 1 cut(s) 609
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 3 cut(s) 94, 609, 966
HpyCH4III ACNGT 1 cut(s) 633
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 9 cut(s) 385, 427, 589, 739, 766, 772, 799, 898, 907
HpyF10VI GCNNNNNNNGC 5 cut(s) 745, 754, 763, 895, 904
HpyF3I CTNAG 5 cut(s) 81, 411, 495, 777, 960
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 7 cut(s) 41, 346, 607, 752, 776, 786, 817
HspAI GCGC 2 cut(s) 11, 41
Kpn2I TCCGGA 1 cut(s) 72
Kzo9I GATC 2 cut(s) 69, 75
LmnI GCTCC 2 cut(s) 160, 661
Lsp1109I GCAGC 1 cut(s) 919
LweI GCATC 2 cut(s) 753, 919
MaeI CTAG 2 cut(s) 819, 970
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 2 cut(s) 639, 926
MalI GATC 2 cut(s) 71, 77
MboI GATC 2 cut(s) 69, 75
MflI RGATCY 2 cut(s) 69, 75
MluCI AATT 9 cut(s) 124, 290, 333, 578, 741, 833, 891, 901, 949
MlyI GAGTC 2 cut(s) 554, 871
MmeI TCCRAC 3 cut(s) 358, 399, 690
Mph1103I ATGCAT 1 cut(s) 774
MroI TCCGGA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 3 cut(s) 8, 54, 915
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 3 cut(s) 8, 54, 915
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 5 cut(s) 745, 754, 763, 895, 904
NdeII GATC 2 cut(s) 69, 75
NlaIII CATG 7 cut(s) 41, 346, 607, 752, 776, 786, 817
NmuCI GTSAC 1 cut(s) 926
NsiI ATGCAT 1 cut(s) 774
NspI RCATGY 4 cut(s) 41, 346, 776, 786
PaeI GCATGC 2 cut(s) 776, 786
PctI GAATGC 1 cut(s) 412
PfeI GAWTC 2 cut(s) 802, 944
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 1 cut(s) 909
PleI GAGTC 2 cut(s) 554, 871
PpsI GAGTC 2 cut(s) 554, 871
Psp6I CCWGG 3 cut(s) 6, 52, 913
PspGI CCWGG 3 cut(s) 6, 52, 913
PspPI GGNCC 2 cut(s) 4, 29
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 2 cut(s) 69, 75
RsaI GTAC 2 cut(s) 51, 137
RsaNI GTAC 2 cut(s) 50, 136
RseI CAYNNNNRTG 1 cut(s) 347
SatI GCNGC 1 cut(s) 908
Sau3AI GATC 2 cut(s) 69, 75
Sau96I GGNCC 2 cut(s) 4, 29
SchI GAGTC 2 cut(s) 554, 871
ScrFI CCNGG 3 cut(s) 8, 54, 915
SfaNI GCATC 2 cut(s) 753, 919
SinI GGWCC 2 cut(s) 4, 29
SmiMI CAYNNNNRTG 1 cut(s) 347
SphI GCATGC 2 cut(s) 776, 786
Sse9I AATT 9 cut(s) 124, 290, 333, 578, 741, 833, 891, 901, 949
SsiI CCGC 3 cut(s) 718, 887, 918
SspMI CTAG 2 cut(s) 819, 970
StyD4I CCNGG 3 cut(s) 6, 52, 913
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 1 cut(s) 633
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 368
TasI AATT 9 cut(s) 124, 290, 333, 578, 741, 833, 891, 901, 949
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 2 cut(s) 802, 944
TscAI CASTG 2 cut(s) 122, 265
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 1 cut(s) 907
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 2 cut(s) 228, 419
TspRI CASTG 2 cut(s) 122, 265
Van91I CCANNNNNTGG 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 4, 29
XapI RAATTY 4 cut(s) 124, 741, 891, 901
XceI RCATGY 4 cut(s) 41, 346, 776, 786
XspI CTAG 2 cut(s) 819, 970
Zsp2I ATGCAT 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.