Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002955.1

Orthogroup ID

OG0003279

Physical Location & Seq

Genomic Coordinates Reverse (-)

89692 .. 91152

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002955.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgatgtgggccgcaactgggcttggccaacgtcgcagccgcttgggtcactttcatgccagtcacagatctaccagtggaagcagttttttgtcccatgccggtcaccatctcactttgcctagctggagaccggtcaccacagcaccgattagagcccgttgtcactctccaattcctgtttcactcttcaaagaactctcaaagggtcgtcttcattacccaccggacactaaaagttgcagatgccaaattatattgaagtacaaggaagtgtttggtgatgtggagcttgatggtaagggcaagagttcatgtgaaaataacaactttgatgttattggggattgtggggacttagggtttgggattgattgtcaggatttagaggaagaagaagatgaagaagaagaagaacatttggaagaagaagaagaagatggtactggtggtgatgacgataatggtggcgaggaattgggtaaaagtgaagttggtgagtttgggggtgaaagggaaattggggacatgggaatggcccaaaaaaggaaattgagtaaggttggattgcataggaggttggggttgatgaatgctcaggtgttggacttgcagaatatggttatgaagagggaagaggggaggagagagagggagtgtaggagagaaaaaggtgaggctgagagagaggaaaggaggaaagaagttagagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.88

Weight (kDa)

5.4

Isoelectric Point (pI)

62.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06071
malus_domestica	MD09G1261100.v1.1
prunus_persica	Prupe.3G158400_v2.0.a1
pyrus_communis	pycom09g17540
rosa_chinensis	RchiOBHm_Chr1g0333501 RchiOBHm_Chr1g0334211 RchiOBHm_Chr7g0221661
rosa_laevigata	RLG00000002147 RLG00000029549 RLG00000029550 RLG00000029599 RLG00000029600 RLG00000029601
rosa_multiflora	Rmu_sc0000494.1_g000002 Rmu_sc0000494.1_g000004 Rmu_sc0000494.1_g000017 Rmu_sc0002955.1_g000015 Rmu_sc0003435.1_g000020 Rmu_sc0005016.1_g000034 Rmu_sc0012130.1_g000001 Rmu_sc0028037.1_g000004
rosa_roxburghii	Rroxscaffold_2G00088180 Rroxscaffold_3G00238140 Rroxscaffold_4G00317400
rosa_rugosa	Rorug01G0109400 Rorug01G0109500 Rorug01G0110100 Rorug01G0110200 Rorug01G0110300 Rorug07G0202800
rosa_samantha	Rh1BG101600 Rh1CG126900 Rh1CG129800 Rh7AG343300 Rh7BG333400
rosa_wichuraiana	Rw0G003360 Rw7G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 40
AcoI	YGGCCR	1 cut(s)	25
AfaI	GTAC	2 cut(s)	266, 445
AfiI	CCNNNNNNNGG	2 cut(s)	18, 546
AgeI	ACCGGT	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	193, 262
AjuI	GAANNNNNNNTTGG	4 cut(s)	166, 198, 504, 536
AluBI	AGCT	2 cut(s)	126, 292
AluI	AGCT	2 cut(s)	126, 292
Alw26I	GTCTC	1 cut(s)	124
AoxI	GGCC	3 cut(s)	9, 25, 537
ApeKI	GCWGC	1 cut(s)	36
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AsiGI	ACCGGT	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	9, 538
AsuHPI	GGTGA	7 cut(s)	98, 130, 293, 464, 509, 521, 686
BalI	TGGCCA	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	3 cut(s)	117, 290, 434
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	123
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	3 cut(s)	12, 37, 40
BlsI	GCNGC	3 cut(s)	13, 38, 41
BmgT120I	GGNCC	2 cut(s)	9, 538
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	597
BsaI	GGTCTC	1 cut(s)	124
BsaWI	WCCGGW	2 cut(s)	133, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 546
Bse118I	RCCGGY	2 cut(s)	101, 133
Bse1I	ACTGG	4 cut(s)	22, 60, 75, 451
BseLI	CCNNNNNNNGG	2 cut(s)	18, 546
BseMII	CTCAG	2 cut(s)	611, 672
BseNI	ACTGG	4 cut(s)	22, 60, 75, 451
BseRI	GAGGAG	1 cut(s)	658
BseXI	GCAGC	1 cut(s)	48
BshFI	GGCC	3 cut(s)	11, 27, 539
BshTI	ACCGGT	1 cut(s)	133
BsiSI	CCGG	3 cut(s)	102, 134, 227
BslFI	GGGAC	3 cut(s)	79, 368, 539
BslI	CCNNNNNNNGG	2 cut(s)	18, 546
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	3 cut(s)	79, 368, 539
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	3 cut(s)	11, 27, 539
Bso31I	GGTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	68
BspACI	CCGC	2 cut(s)	12, 40
BspANI	GGCC	3 cut(s)	11, 27, 539
BspCNI	CTCAG	2 cut(s)	610, 673
BspTNI	GGTCTC	1 cut(s)	124
BsrFI	RCCGGY	2 cut(s)	101, 133
BsrI	ACTGG	4 cut(s)	22, 60, 75, 451
BssAI	RCCGGY	2 cut(s)	101, 133
BssMI	GATC	1 cut(s)	68
Bst6I	CTCTTC	3 cut(s)	194, 623, 630
BstDEI	CTNAG	3 cut(s)	358, 597, 681
BstEII	GGTNACC	2 cut(s)	104, 136
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstPI	GGTNACC	2 cut(s)	104, 136
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	3 cut(s)	11, 27, 539
BtsIMutI	CAGTG	1 cut(s)	82
Cfr10I	RCCGGY	2 cut(s)	101, 133
Cfr13I	GGNCC	2 cut(s)	9, 538
Csp6I	GTAC	2 cut(s)	265, 444
CspAI	ACCGGT	1 cut(s)	133
CviAII	CATG	4 cut(s)	56, 98, 315, 529
CviJI	RGCY	9 cut(s)	11, 22, 27, 39, 126, 158, 292, 539, 680
CviKI_1	RGCY	9 cut(s)	11, 22, 27, 39, 126, 158, 292, 539, 680
CviQI	GTAC	2 cut(s)	265, 444
DdeI	CTNAG	3 cut(s)	358, 597, 681
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	3 cut(s)	194, 623, 630
EarI	CTCTTC	3 cut(s)	194, 623, 630
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	124
Eco91I	GGTNACC	2 cut(s)	104, 136
EcoO65I	GGTNACC	2 cut(s)	104, 136
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	4 cut(s)	59, 101, 318, 532
FaiI	YATR	8 cut(s)	57, 99, 257, 316, 530, 573, 620, 626
FaqI	GGGAC	3 cut(s)	79, 368, 539
FatI	CATG	4 cut(s)	55, 97, 314, 528
Fnu4HI	GCNGC	3 cut(s)	12, 37, 40
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	3 cut(s)	12, 37, 40
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	12, 37, 40
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	11, 27, 539
HapII	CCGG	3 cut(s)	102, 134, 227
Hin1II	CATG	4 cut(s)	59, 101, 318, 532
HpaII	CCGG	3 cut(s)	102, 134, 227
HphI	GGTGA	7 cut(s)	98, 130, 293, 464, 509, 521, 686
Hpy188III	TCNNGA	1 cut(s)	380
Hpy99I	CGWCG	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	243, 571, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	3 cut(s)	358, 597, 681
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	4 cut(s)	59, 101, 318, 532
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	5 cut(s)	47, 62, 104, 136, 164
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	5 cut(s)	174, 252, 476, 519, 551
MluNI	TGGCCA	1 cut(s)	27
MmeI	TCCRAC	2 cut(s)	544, 585
Mox20I	TGGCCA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	27
MslI	CAYNNNNRTG	2 cut(s)	54, 533
Msp20I	TGGCCA	1 cut(s)	27
MspI	CCGG	3 cut(s)	102, 134, 227
Mva1269I	GAATGC	1 cut(s)	598
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	4 cut(s)	59, 101, 318, 532
NmuCI	GTSAC	5 cut(s)	47, 62, 104, 136, 164
PctI	GAATGC	1 cut(s)	598
PinAI	ACCGGT	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	13, 38, 41
PspEI	GGTNACC	2 cut(s)	104, 136
PspPI	GGNCC	2 cut(s)	9, 538
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	2 cut(s)	266, 445
RsaNI	GTAC	2 cut(s)	265, 444
RseI	CAYNNNNRTG	2 cut(s)	54, 533
SatI	GCNGC	3 cut(s)	12, 37, 40
Sau3AI	GATC	1 cut(s)	68
Sau96I	GGNCC	2 cut(s)	9, 538
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	7 cut(s)	34, 128, 294, 564, 581, 603, 676
SfaNI	GCATC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	54, 533
Sse9I	AATT	5 cut(s)	174, 252, 476, 519, 551
SsiI	CCGC	2 cut(s)	12, 40
SspMI	CTAG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	34
TasI	AATT	5 cut(s)	174, 252, 476, 519, 551
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	2 cut(s)	14, 42
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	5 cut(s)	47, 62, 104, 136, 164
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	5 cut(s)	47, 62, 104, 136, 164
TspDTI	ATGAA	6 cut(s)	44, 206, 303, 417, 605, 641
TspRI	CASTG	1 cut(s)	82
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.