RLG00000029600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003279
Physical Location & Seq
Forward (+)
40984929 .. 40985300
372 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029600

Sequence Viewer

Length: 372 bp
ATGTGGACAAGAAGGGAGTTTGAGAAACGGTTGAGGTTACAGGGGGAGTTTGATGAGGAGCATCACAGGAGGATGAGGATGGAGGAGAGGAGGAAGGAGGAGGAGGAGTTGGAGTGGCGGGAGAGGATGGTAGGTTTGCAAATTCAGCATGGGAAGCAAATGATGCAAATCCATGCTGAGGCATGCCAGAACCAAATGCAGATTCTTGGGGTCATGGCTAGGTTTGTTTGTCAATTTTTTGGGTCAATGAGTGATGGCCTTGGAGGTGGTTTAGGGACTCTGCCACCCCAAATTTTGCAGAATTTGCAGCATCCTGGCGGAGTGGGTGAAAATGGGAAGCCGGATTCCAATTCGCCTTCTGAGTTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.37

Weight (kDa)

5.96

Isoelectric Point (pI)

67.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 118, 318
AcsI RAATTY 3 cut(s) 141, 291, 301
AfiI CCNNNNNNNGG 1 cut(s) 178
AjnI CCWGG 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 3 cut(s) 141, 291, 301
AsuHPI GGTGA 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 319
BccI CCATC 3 cut(s) 73, 121, 248
BciT130I CCWGG 1 cut(s) 315
BfaI CTAG 2 cut(s) 219, 370
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 3 cut(s) 70, 153, 319
Bpu10I CCTNAGC 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 4 cut(s) 92, 98, 122, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse8I GATNNNNATC 1 cut(s) 167
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 4 cut(s) 78, 84, 132, 310
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 168, 351
BseRI GAGGAG 6 cut(s) 71, 98, 103, 113, 116, 119
BseXI GCAGC 1 cut(s) 319
BshFI GGCC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 1 cut(s) 258
BspACI CCGC 2 cut(s) 118, 318
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 2 cut(s) 169, 352
BssECI CCNNGG 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 30
BstAPI GCANNNNNTGC 2 cut(s) 163, 304
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 2 cut(s) 177, 360
BstF5I GGATG 4 cut(s) 78, 84, 132, 310
BstMWI GCNNNNNNNGC 4 cut(s) 145, 154, 163, 304
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 319
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 4 cut(s) 78, 84, 132, 310
Cac8I GCNNGC 1 cut(s) 184
CviAII CATG 4 cut(s) 149, 173, 183, 214
CviJI RGCY 3 cut(s) 218, 258, 340
CviKI_1 RGCY 3 cut(s) 218, 258, 340
DdeI CTNAG 2 cut(s) 177, 360
EciI GGCGGA 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 4 cut(s) 152, 176, 186, 217
FaiI YATR 4 cut(s) 150, 174, 184, 215
FaqI GGGAC 1 cut(s) 289
FatI CATG 4 cut(s) 148, 172, 182, 213
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 4 cut(s) 85, 91, 139, 297
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 2 cut(s) 219, 370
GluI GCNGC 1 cut(s) 308
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 341
Hin1II CATG 4 cut(s) 152, 176, 186, 217
HinfI GANTC 3 cut(s) 202, 277, 344
HpaII CCGG 1 cut(s) 341
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 361
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 3 cut(s) 6, 88, 366
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4V TGCA 5 cut(s) 139, 166, 199, 298, 307
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 154, 163, 304
HpyF3I CTNAG 2 cut(s) 177, 360
Hsp92II CATG 4 cut(s) 152, 176, 186, 217
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 6 cut(s) 26, 52, 200, 300, 327, 354
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 3 cut(s) 70, 153, 319
MaeI CTAG 2 cut(s) 219, 370
MaeIII GTNAC 1 cut(s) 36
MluCI AATT 5 cut(s) 141, 233, 291, 301, 349
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 90
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 4 cut(s) 145, 154, 163, 304
NlaIII CATG 4 cut(s) 152, 176, 186, 217
NspI RCATGY 1 cut(s) 186
PaeI GCATGC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 202, 344
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
SatI GCNGC 1 cut(s) 308
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 315
SetI ASST 4 cut(s) 38, 136, 224, 268
SfaNI GCATC 3 cut(s) 70, 153, 319
SphI GCATGC 1 cut(s) 186
Sse9I AATT 5 cut(s) 141, 233, 291, 301, 349
SsiI CCGC 2 cut(s) 118, 318
SspMI CTAG 2 cut(s) 219, 370
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 30
TasI AATT 5 cut(s) 141, 233, 291, 301, 349
TfiI GAWTC 2 cut(s) 202, 344
TseI GCWGC 1 cut(s) 307
XapI RAATTY 3 cut(s) 141, 291, 301
XceI RCATGY 1 cut(s) 186
XspI CTAG 2 cut(s) 219, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.