FvH4_7g17950
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002549
Physical Location & Seq
Reverse (-)
15108900 .. 15111637
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17950.t3

Sequence Viewer

Length: 1497 bp
ATGAGCTACGGTGGCTTCTCACTTCCAAAGGGTTTCCGGTTCCACCCCTCTGATGAGGAGCTGCTGAGTCACTACTTGCAGATGAAGAATGATCAGCGCGAGGACCCCGAGATCACGGCCATCATCCCTGAGATTGATGTGTCCAAGCACGAGCCTCGCGACTTGCCCGCACTGGTGTTCGCAAGGGCGGAGTTTCTGGACAGGGAGTGGTTCACGATGGCGGACTCTCCGGACATGGAGTGGTACTTCTTCAGTCCTAGAGTTTTTAAGCACAGCAACAGCAAAAGCACTAAGATCAATAGGACTACTGATGAAGGATCTTGGAAGAAGCAAGGCAACGATCGCAGGATCACCGGGGCCTTTTCTGATAAGCAGATCGGGGGGAAGAGGATATTGACCTTCTACCTTCCGAATAAACAGAAGACTGACTGGGTTATTCATGAGTATTATCTCACTAAGGCAGATTCTGATGAGCAGATCGGCGACTTTGTTCTATGCCGCTTGAAGGACAACCGCTTGAAAAAGAAGTCAGGCAAGTCTGAGCATGATCCGCAGGATGCTCCATTGTGCGATGGACGTGAGCCTAGTAGCGGTAGTTGCAGTATGGCCTTCAATGTTGAAGATCAAGCATCCAGTGAGCTGGGAAATGTTGTTGTGATTCCCAATGGCAATGTTGATGAAGCTGAACATGGTGGAGGTAGCTGTAGTATGACCTTATATGTTGAAAGTCCAGCATCCAAACAGCTGGAAAATGTTCTTCTGAATCCATATGGCAATAATGATGACACTGAACATGGCCACATCGTCTCTGGTATGCTTACAGAAGCAGAAGAATACCAGGGATTCAAAGAGCTACAAGATGCTCTTTTTGAATCTGATGGCAATGATCAAGGACTTAGAGGCTCAGAAACTGCTCCTTGTTATATAGATAAGAATGATCTTTCGGTCTCCGTTGAAGGTCAACCTGATAGCTATAATTCACCTGATTCCGAGATGGTTGAAGAGCTACTTCATGAGCCAGGAGATCTGGCCTTACTCCATCCACCTCCGTCAATTCAACTGCAGTCACCAATATACACAAAGCTAGGCACCCACAATATTTTTAATGATGAATATCGTAAGAGGAAATATCCATTTGGGGATAGTGAGCCTTTTCTTACGAAGAAGAATCATACTGATGAAGTAGATAGCTACACTTCATCTAACTCTGAAAATCAACCTGCAGATGCGATTCCAGAGGGATATTCTCAACCAGGAGGAAATCTGGGATCTGATTTGTTTAGGTCACAGACACTACCATCAATAAACAGAGAACCAAGAGTTCTTTCCCATGACAATATATGGGATCATTTGCCATCTATAATAGAAGGCTTTGAGTTTTCTCTCGCGAATTTCTCAGATACAGTTATTGATCGAGGTATCAGTGACAGAAACATTGAAGGTGCCTATGGATCGGCAAACGATTATAATGCATTAGCCATTGGAGAAACCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

499

Amino Acids

55.82

Weight (kDa)

4.68

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 110 - 183 4.5e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1467
Acc36I ACCTGC 1 cut(s) 1228
AccB1I GGYRCC 2 cut(s) 1088, 1442
AccII CGCG 3 cut(s) 99, 159, 1388
AccIII TCCGGA 1 cut(s) 229
AciI CCGC 7 cut(s) 168, 188, 221, 499, 514, 551, 591
AclWI GGATC 6 cut(s) 325, 356, 542, 1276, 1353, 1459
AcoI YGGCCR 2 cut(s) 117, 796
AcsI RAATTY 1 cut(s) 1390
AcuI CTGAAG 1 cut(s) 235
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 505, 590
AjiI CACGTC 1 cut(s) 578
AjnI CCWGG 3 cut(s) 837, 1018, 1252
AjuI GAANNNNNNNTTGG 2 cut(s) 1309, 1341
Alw26I GTCTC 2 cut(s) 811, 952
AlwI GGATC 6 cut(s) 325, 356, 542, 1276, 1353, 1459
AlwNI CAGNNNCTG 2 cut(s) 467, 911
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 229
AoxI GGCC 5 cut(s) 117, 357, 606, 796, 1029
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 1390
Asp700I GAANNNNTTC 1 cut(s) 753
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 103, 357
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 3 cut(s) 343, 972, 1059
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 1 cut(s) 103
BalI TGGCCA 1 cut(s) 798
BanI GGYRCC 2 cut(s) 1088, 1442
BauI CACGAG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 48
BccI CCATC 8 cut(s) 128, 211, 566, 872, 988, 1047, 1306, 1363
BceAI ACGGC 1 cut(s) 132
BcgI CGANNNNNNTGC 4 cut(s) 137, 171, 1451, 1485
BciT130I CCWGG 3 cut(s) 839, 1020, 1254
BclI TGATCA 2 cut(s) 91, 886
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 811, 952
BfaI CTAG 3 cut(s) 258, 585, 1085
BfmI CTRYAG 3 cut(s) 703, 1061, 1221
BfuAI ACCTGC 1 cut(s) 1228
BglII AGATCT 1 cut(s) 1024
BisI GCNGC 2 cut(s) 62, 499
BlsI GCNGC 2 cut(s) 63, 500
Bme1390I CCNGG 4 cut(s) 355, 839, 1020, 1254
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 107
BmgBI CACGTC 1 cut(s) 578
BmgT120I GGNCC 2 cut(s) 103, 357
BmiI GGNNCC 5 cut(s) 41, 105, 358, 1090, 1444
BmrFI CCNGG 4 cut(s) 355, 839, 1020, 1254
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 5 cut(s) 547, 638, 743, 850, 1216
BmuI ACTGGG 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 428
BplI GAGNNNNNCTC 1 cut(s) 1476
BpuMI CCSGG 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 1113
BsaI GGTCTC 1 cut(s) 952
BsaJI CCNNGG 2 cut(s) 354, 838
BsaWI WCCGGW 2 cut(s) 36, 229
Bsc4I CCNNNNNNNGG 2 cut(s) 505, 590
Bse1I ACTGG 3 cut(s) 177, 434, 633
Bse3DI GCAATG 2 cut(s) 676, 889
Bse8I GATNNNNATC 1 cut(s) 1113
BseAI TCCGGA 1 cut(s) 229
BseBI CCWGG 3 cut(s) 839, 1020, 1254
BseDI CCNNGG 2 cut(s) 354, 838
BseGI GGATG 5 cut(s) 123, 562, 629, 734, 1039
BseJI GATNNNNATC 1 cut(s) 1113
BseLI CCNNNNNNNGG 2 cut(s) 505, 590
BseMI GCAATG 2 cut(s) 676, 889
BseMII CTCAG 5 cut(s) 56, 120, 531, 918, 1410
BseNI ACTGG 3 cut(s) 177, 434, 633
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 48
BseYI CCCAGC 1 cut(s) 640
Bsh1236I CGCG 3 cut(s) 99, 159, 1388
Bsh1285I CGRYCG 1 cut(s) 343
BshFI GGCC 5 cut(s) 119, 359, 608, 798, 1031
BshNI GGYRCC 2 cut(s) 1088, 1442
BsiEI CGRYCG 1 cut(s) 343
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 3 cut(s) 37, 230, 354
BslI CCNNNNNNNGG 2 cut(s) 505, 590
BsmAI GTCTC 2 cut(s) 811, 952
BsmBI CGTCTC 1 cut(s) 811
BsnI GGCC 5 cut(s) 119, 359, 608, 798, 1031
Bso31I GGTCTC 1 cut(s) 952
BsoBI CYCGRG 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 229
Bsp68I TCGCGA 2 cut(s) 159, 1388
BspACI CCGC 7 cut(s) 168, 188, 221, 499, 514, 551, 591
BspANI GGCC 5 cut(s) 119, 359, 608, 798, 1031
BspCNI CTCAG 5 cut(s) 57, 121, 532, 917, 1409
BspEI TCCGGA 1 cut(s) 229
BspFNI CGCG 3 cut(s) 99, 159, 1388
BspHI TCATGA 2 cut(s) 439, 1012
BspLI GGNNCC 5 cut(s) 41, 105, 358, 1090, 1444
BspMAI CTGCAG 2 cut(s) 1065, 1225
BspMI ACCTGC 1 cut(s) 1228
BspPI GGATC 6 cut(s) 325, 356, 542, 1276, 1353, 1459
BspQI GCTCTTC 1 cut(s) 996
BspT107I GGYRCC 2 cut(s) 1088, 1442
BspTNI GGTCTC 1 cut(s) 952
BsrDI GCAATG 2 cut(s) 676, 889
BsrI ACTGG 3 cut(s) 177, 434, 633
BssECI CCNNGG 2 cut(s) 354, 838
BssSI CACGAG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 3 cut(s) 839, 1020, 1254
Bst4CI ACNGT 2 cut(s) 11, 1405
Bst6I CTCTTC 2 cut(s) 380, 996
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 8 cut(s) 65, 129, 291, 456, 540, 896, 904, 1396
BstF5I GGATG 5 cut(s) 123, 562, 629, 734, 1039
BstFNI CGCG 3 cut(s) 99, 159, 1388
BstHHI GCGC 1 cut(s) 99
BstMAI GTCTC 2 cut(s) 811, 952
BstMCI CGRYCG 1 cut(s) 343
BstMWI GCNNNNNNNGC 4 cut(s) 12, 342, 550, 597
BstNI CCWGG 3 cut(s) 839, 1020, 1254
BstSCI CCNGG 4 cut(s) 353, 837, 1018, 1252
BstSFI CTRYAG 3 cut(s) 703, 1061, 1221
BstUI CGCG 3 cut(s) 99, 159, 1388
BstV1I GCAGC 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 3 cut(s) 317, 1024, 1268
BstXI CCANNNNNNTGG 2 cut(s) 640, 745
BstYI RGATCY 3 cut(s) 317, 1024, 1268
BsuRI GGCC 5 cut(s) 119, 359, 608, 798, 1031
BtgZI GCGATG 1 cut(s) 585
BtrI CACGTC 1 cut(s) 578
BtsCI GGATG 5 cut(s) 123, 562, 629, 734, 1039
BtsIMutI CAGTG 4 cut(s) 170, 640, 786, 1429
BtuMI TCGCGA 2 cut(s) 159, 1388
BveI ACCTGC 1 cut(s) 1228
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 2 cut(s) 467, 911
CciI TCATGA 2 cut(s) 439, 1012
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 103, 357
Csp6I GTAC 1 cut(s) 244
CviAII CATG 7 cut(s) 235, 440, 545, 689, 794, 1013, 1331
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 8 cut(s) 65, 129, 291, 456, 540, 896, 904, 1396
EaeI YGGCCR 2 cut(s) 117, 796
Eam1104I CTCTTC 2 cut(s) 380, 996
EarI CTCTTC 2 cut(s) 380, 996
EciI GGCGGA 2 cut(s) 203, 236
Eco31I GGTCTC 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 107
EcoO109I RGGNCCY 2 cut(s) 103, 357
EcoRII CCWGG 3 cut(s) 837, 1018, 1252
EcoT22I ATGCAT 1 cut(s) 1474
Esp3I CGTCTC 1 cut(s) 811
FaeI CATG 7 cut(s) 238, 443, 548, 692, 797, 1016, 1334
FalI AAGNNNNNCTT 4 cut(s) 849, 881, 993, 1025
FatI CATG 7 cut(s) 234, 439, 544, 688, 793, 1012, 1330
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 769
FbaI TGATCA 2 cut(s) 91, 886
Fnu4HI GCNGC 2 cut(s) 62, 499
FokI GGATG 5 cut(s) 110, 569, 616, 721, 1026
Fsp4HI GCNGC 2 cut(s) 62, 499
FspBI CTAG 3 cut(s) 258, 585, 1085
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 62, 499
GsaI CCCAGC 1 cut(s) 644
HaeIII GGCC 5 cut(s) 119, 359, 608, 798, 1031
HapII CCGG 3 cut(s) 37, 230, 354
HhaI GCGC 1 cut(s) 99
Hin1II CATG 7 cut(s) 238, 443, 548, 692, 797, 1016, 1334
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 962
HindII GTYRAC 1 cut(s) 962
HpaII CCGG 3 cut(s) 37, 230, 354
HphI GGTGA 3 cut(s) 343, 972, 1059
Hpy166II GTNNAC 2 cut(s) 213, 962
Hpy188III TCNNGA 8 cut(s) 158, 197, 214, 230, 440, 1013, 1235, 1387
Hpy8I GTNNAC 2 cut(s) 213, 962
HpyAV CCTTC 8 cut(s) 308, 409, 416, 499, 619, 950, 1361, 1433
HpyCH4III ACNGT 2 cut(s) 11, 1405
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 5 cut(s) 79, 600, 1063, 1223, 1472
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 342, 550, 597
HpyF3I CTNAG 8 cut(s) 65, 129, 291, 456, 540, 896, 904, 1396
HpySE526I ACGT 1 cut(s) 577
Hsp92II CATG 7 cut(s) 238, 443, 548, 692, 797, 1016, 1334
HspAI GCGC 1 cut(s) 97
Kpn2I TCCGGA 1 cut(s) 229
Ksp22I TGATCA 2 cut(s) 91, 886
LguI GCTCTTC 1 cut(s) 996
LmnI GCTCC 3 cut(s) 58, 565, 919
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 5 cut(s) 547, 638, 743, 850, 1216
MaeI CTAG 3 cut(s) 258, 585, 1085
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 4 cut(s) 68, 1065, 1284, 1424
MflI RGATCY 3 cut(s) 317, 1024, 1268
MlsI TGGCCA 1 cut(s) 798
MluCI AATT 3 cut(s) 976, 1053, 1390
MluNI TGGCCA 1 cut(s) 798
MlyI GAGTC 2 cut(s) 76, 218
Mox20I TGGCCA 1 cut(s) 798
Mph1103I ATGCAT 1 cut(s) 1474
MroI TCCGGA 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 753
MscI TGGCCA 1 cut(s) 798
MseI TTAA 2 cut(s) 267, 1104
MslI CAYNNNNRTG 1 cut(s) 1176
Msp20I TGGCCA 1 cut(s) 798
MspA1I CMGCKG 1 cut(s) 745
MspI CCGG 3 cut(s) 37, 230, 354
MspR9I CCNGG 4 cut(s) 355, 839, 1020, 1254
MvaI CCWGG 3 cut(s) 839, 1020, 1254
MvnI CGCG 3 cut(s) 99, 159, 1388
MwoI GCNNNNNNNGC 4 cut(s) 12, 342, 550, 597
NciI CCSGG 1 cut(s) 355
NdeI CATATG 1 cut(s) 769
NlaIII CATG 7 cut(s) 238, 443, 548, 692, 797, 1016, 1334
NlaIV GGNNCC 5 cut(s) 41, 105, 358, 1090, 1444
NmuCI GTSAC 4 cut(s) 68, 1065, 1284, 1424
NruI TCGCGA 2 cut(s) 159, 1388
NsiI ATGCAT 1 cut(s) 1474
PagI TCATGA 2 cut(s) 439, 1012
PciSI GCTCTTC 1 cut(s) 996
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 8 cut(s) 464, 658, 763, 843, 872, 986, 1168, 1231
PkrI GCNGC 2 cut(s) 63, 500
Ple19I CGATCG 1 cut(s) 343
PleI GAGTC 2 cut(s) 75, 218
PpsI GAGTC 2 cut(s) 75, 218
PpuMI RGGWCCY 1 cut(s) 103
PsiI TTATAA 1 cut(s) 1467
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 3 cut(s) 837, 1018, 1252
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 3 cut(s) 837, 1018, 1252
PspN4I GGNNCC 5 cut(s) 41, 105, 358, 1090, 1444
PspPI GGNCC 2 cut(s) 103, 357
PspPPI RGGWCCY 1 cut(s) 103
PstI CTGCAG 2 cut(s) 1065, 1225
PstNI CAGNNNCTG 2 cut(s) 467, 911
PsuI RGATCY 3 cut(s) 317, 1024, 1268
PvuI CGATCG 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 745
RruI TCGCGA 2 cut(s) 159, 1388
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 1176
SapI GCTCTTC 1 cut(s) 996
SaqAI TTAA 2 cut(s) 267, 1104
SatI GCNGC 2 cut(s) 62, 499
Sau96I GGNCC 2 cut(s) 103, 357
SchI GAGTC 2 cut(s) 76, 218
ScrFI CCNGG 4 cut(s) 355, 839, 1020, 1254
SfaNI GCATC 5 cut(s) 547, 638, 743, 850, 1216
SfcI CTRYAG 3 cut(s) 703, 1061, 1221
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 1176
Sse9I AATT 3 cut(s) 976, 1053, 1390
SsiI CCGC 7 cut(s) 168, 188, 221, 499, 514, 551, 591
SspI AATATT 1 cut(s) 1099
SspMI CTAG 3 cut(s) 258, 585, 1085
StyD4I CCNGG 4 cut(s) 353, 837, 1018, 1252
TaaI ACNGT 2 cut(s) 11, 1405
TaiI ACGT 1 cut(s) 580
TaqI TCGA 1 cut(s) 1414
TaqII GACCGA 1 cut(s) 934
TasI AATT 3 cut(s) 976, 1053, 1390
TauI GCSGC 1 cut(s) 501
TfiI GAWTC 8 cut(s) 464, 658, 763, 843, 872, 986, 1168, 1231
Tru1I TTAA 2 cut(s) 267, 1104
Tru9I TTAA 2 cut(s) 267, 1104
TscAI CASTG 4 cut(s) 177, 640, 793, 1429
TseFI GTSAC 4 cut(s) 68, 1065, 1284, 1424
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 4 cut(s) 68, 1065, 1284, 1424
TspDTI ATGAA 8 cut(s) 98, 327, 428, 693, 1001, 1125, 1188, 1194
TspGWI ACGGA 2 cut(s) 940, 1038
TspRI CASTG 4 cut(s) 177, 640, 793, 1429
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 1390
XcmI CCANNNNNNNNNTGG 1 cut(s) 806
XmnI GAANNNNTTC 1 cut(s) 753
XspI CTAG 3 cut(s) 258, 585, 1085
Zsp2I ATGCAT 1 cut(s) 1474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.