RchiOBHm_Chr1g0361471
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002549
Physical Location & Seq
Reverse (-)
53420670 .. 53424471
3802 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58633

Sequence Viewer

Length: 1722 bp
ATGTACCACCTCACTCTTTCCTCTGCACTTCCACAGCCTAAAACAACACACAGTCTATTCAGAGAGAGAGAGAGAGAGATGATGATGATCAGCAGCGGCCGGATCACACTTCCAAAGGGTTTCCGATTCCAGCCATCCGACGAGGAGCTGCTGAGTCATTACTTGGAGAAGAAGAATTATCAGAGCAAGGATCCCCAAATCGAGGCCATCATCCCAGAAATCAATGTGTGCGACCACGAGCCCCGCGATTTACCAGCACTGGTGTTCAAAAGGGCGGAATTTCTGGACAAGGAGTGGTTCACCATGGCGGACTCTCCGGACATGGAGCGGTACTTCTTCAGTCCGCTAGTTTTTAAAAACAGCACTAGCAAAAGCAAAAGCAAAGGCAAAGGCAAAGGCAAAAGCACTCAAATCAACAGGGCTACCAAGGAAGGCTCCTGGAAGAAGCAAGGCGGTGACAAAAGAATCACTCGGCCCTATTCAGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCTGCGGGATAAACAGAGGACTGACTGGGTTATCCATGAGTATTATCTCACCAAGGCCAATTCTGATGAGCAGGTCGGGGACTTTGTTCTCTGCCGCTTGAAGAACAAGTCAGGCAAGTCTGATCATGATCAGCAGGATGATCCACTGTGCGATGGAGGTGAACCTAATAGTGGTAGCTGCAGTATGGTCTCCAATGTTGAACATCAAGGATCCAAAGAGCTGGGAACTGTTCTTCCCATTTCCAATATCAATGATGATGAAGCTGAACGTGGTGGCGGTAGCTGCAGTATGGCCTTCAATGTTGAAAATCAACCATCCAAACAGCTGGAGAATGTTCTTCCGATTCCCAATCGCAGTGATGGTGACACTGAACATGGTGGTGGCAGCTGCCACATCGCCTCTGGTTTCGAAAATGAAGCTGCAGAATTTGGTTTGCTTACAGAAGAAGAAATAAACCAGACCTTCAAGGAGCTGATAGATGCTGTTAGGGAATATGATGGTAATGAGCAAGAAGTTAGAGGCTCACAAACTGATTTTTGTTATATTGATCAGAATGATCATTGGATCTCTGTTGAAGATCAACCAGCTGATAGCTGCATTTCATCTGATTCCATTGTGGTTGAAAAGCCCCTTGATGAGCCAGGAAATCTGGCCTTGCACCGTCATCCACTTCCGCCACCCAATATGGTTGAAAAGCCACTTGATGAGCCAAGAAATCTGGCCTTACCCCTTCATCCACCTCCGCCACCCAATATGTTTGAAAAGCCACTTGATGAGCCAGGAAATCTGGGCTTACCCCTACATCCACCTCCATCACCTCAACTGCAGTCACCAATATACACAAAGCTGGGCACCACCAATGTCCAAAATGATGAATCTCGTAAGAGGAAATATTCATTTGGGGATAATGACTCTTTTCTTACGAAGAAGAATCATATTGATGAAGTAGATAGCAACTCTTCATCTAATTCTGAAAATCAAGCTGCGGATGCGATTCCAGAGGGATATTCTCAACCAGGAGAAAATCTGGAATCTGAATCATTTCAGTCGCAGGAACTACCATCAATAAACAGAGTACCGGGAGATTTTCCCCATGACAATAATTTAATTGAATGGGGTAAGTTTTCACCTATAACAGAAGGTTTTGACTCTTCTCTCGAGTTCTCAGATACATTTATTGATTGCTACCCCTGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

573

Amino Acids

64.42

Weight (kDa)

4.87

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 38 - 189 7e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 531, 583
AccB1I GGYRCC 1 cut(s) 1373
AccBSI CCGCTC 1 cut(s) 328
AccII CGCG 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 316
AclWI GGATC 8 cut(s) 110, 185, 198, 515, 656, 726, 739, 1094
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 278, 947
AcuI CTGAAG 1 cut(s) 322
AfaI GTAC 3 cut(s) 5, 332, 1599
AfiI CCNNNNNNNGG 2 cut(s) 202, 692
AjnI CCWGG 4 cut(s) 437, 1162, 1300, 1537
AloI GAACNNNNNNTCC 2 cut(s) 739, 771
Alw26I GTCTC 1 cut(s) 715
AlwI GGATC 8 cut(s) 110, 185, 198, 515, 656, 726, 739, 1094
Ama87I CYCGRG 1 cut(s) 1679
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 7 cut(s) 97, 204, 473, 576, 813, 1173, 1242
ApeKI GCWGC 9 cut(s) 93, 148, 699, 804, 906, 909, 941, 1116, 1505
ApoI RAATTY 2 cut(s) 278, 947
Asp700I GAANNNNTTC 1 cut(s) 1563
AspS9I GGNCC 1 cut(s) 474
AsuC2I CCSGG 1 cut(s) 1602
AsuHPI GGTGA 8 cut(s) 292, 467, 562, 692, 896, 1329, 1344, 1641
AsuII TTCGAA 1 cut(s) 930
AvaI CYCGRG 1 cut(s) 1679
BaeGI GKGCMC 1 cut(s) 1376
BamHI GGATCC 2 cut(s) 190, 731
BanI GGYRCC 1 cut(s) 1373
BanII GRGCYC 1 cut(s) 243
BauI CACGAG 1 cut(s) 236
BbvI GCAGC 9 cut(s) 105, 135, 686, 791, 896, 918, 928, 1103, 1492
BccI CCATC 8 cut(s) 142, 215, 668, 844, 875, 1013, 1342, 1591
BciT130I CCWGG 4 cut(s) 439, 1164, 1302, 1539
BclI TGATCA 5 cut(s) 87, 643, 649, 1069, 1078
BcnI CCSGG 1 cut(s) 1602
BcoDI GTCTC 1 cut(s) 715
BfaI CTAG 2 cut(s) 347, 366
BfmI CTRYAG 4 cut(s) 700, 805, 942, 1346
BfuAI ACCTGC 2 cut(s) 531, 583
Bme1390I CCNGG 5 cut(s) 439, 1164, 1302, 1539, 1602
BmeT110I CYCGRG 1 cut(s) 1679
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 4 cut(s) 192, 436, 733, 1375
BmrFI CCNGG 5 cut(s) 439, 1164, 1302, 1539, 1602
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 2 cut(s) 991, 1501
BmuI ACTGGG 1 cut(s) 556
BpmI CTGGAG 1 cut(s) 869
Bpu14I TTCGAA 1 cut(s) 930
BpuMI CCSGG 1 cut(s) 1602
BsaBI GATNNNNATC 2 cut(s) 86, 648
BsaI GGTCTC 1 cut(s) 715
BsaJI CCNNGG 3 cut(s) 303, 426, 573
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 692
Bse1I ACTGG 2 cut(s) 264, 551
Bse8I GATNNNNATC 2 cut(s) 86, 648
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 4 cut(s) 439, 1164, 1302, 1539
BseDI CCNNGG 3 cut(s) 303, 426, 573
BseGI GGATG 8 cut(s) 134, 210, 664, 836, 1186, 1255, 1324, 1516
BseJI GATNNNNATC 2 cut(s) 86, 648
BseLI CCNNNNNNNGG 2 cut(s) 202, 692
BseMII CTCAG 2 cut(s) 143, 1701
BseNI ACTGG 2 cut(s) 264, 551
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 1376
BseX3I CGGCCG 1 cut(s) 97
BseXI GCAGC 9 cut(s) 105, 135, 686, 791, 896, 918, 928, 1103, 1492
BseYI CCCAGC 2 cut(s) 742, 1369
BsgI GTGCAG 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 7 cut(s) 99, 206, 475, 578, 815, 1175, 1244
BshNI GGYRCC 1 cut(s) 1373
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 1679
BsiSI CCGG 3 cut(s) 100, 317, 1601
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 2 cut(s) 202, 692
BsmAI GTCTC 1 cut(s) 715
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 7 cut(s) 99, 206, 475, 578, 815, 1175, 1244
Bso31I GGTCTC 1 cut(s) 715
BsoBI CYCGRG 1 cut(s) 1679
Bsp119I TTCGAA 1 cut(s) 930
Bsp1286I GDGCHC 2 cut(s) 243, 1376
Bsp13I TCCGGA 1 cut(s) 316
Bsp19I CCATGG 1 cut(s) 303
BspANI GGCC 7 cut(s) 99, 206, 475, 578, 815, 1175, 1244
BspCNI CTCAG 2 cut(s) 144, 1700
BspEI TCCGGA 1 cut(s) 316
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 4 cut(s) 192, 436, 733, 1375
BspMAI CTGCAG 4 cut(s) 704, 809, 946, 1350
BspMI ACCTGC 2 cut(s) 531, 583
BspPI GGATC 8 cut(s) 110, 185, 198, 515, 656, 726, 739, 1094
BspT104I TTCGAA 1 cut(s) 930
BspT107I GGYRCC 1 cut(s) 1373
BspTNI GGTCTC 1 cut(s) 715
BsrBI CCGCTC 1 cut(s) 328
BsrI ACTGG 2 cut(s) 264, 551
BssECI CCNNGG 3 cut(s) 303, 426, 573
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 3 cut(s) 303, 426, 573
Bst2BI CACGAG 1 cut(s) 236
Bst2UI CCWGG 4 cut(s) 439, 1164, 1302, 1539
Bst4CI ACNGT 4 cut(s) 53, 669, 751, 1184
Bst6I CTCTTC 3 cut(s) 497, 1486, 1678
BstBI TTCGAA 1 cut(s) 930
BstDEI CTNAG 2 cut(s) 152, 1687
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 8 cut(s) 134, 210, 664, 836, 1186, 1255, 1324, 1516
BstFNI CGCG 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 715
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 804, 1511
BstNI CCWGG 4 cut(s) 439, 1164, 1302, 1539
BstSCI CCNGG 5 cut(s) 437, 1162, 1300, 1537, 1600
BstSFI CTRYAG 4 cut(s) 700, 805, 942, 1346
BstSLI GKGCMC 1 cut(s) 1376
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 9 cut(s) 105, 135, 686, 791, 896, 918, 928, 1103, 1492
BstX2I RGATCY 4 cut(s) 190, 507, 731, 1086
BstXI CCANNNNNNTGG 2 cut(s) 742, 847
BstYI RGATCY 4 cut(s) 190, 507, 731, 1086
BstZI CGGCCG 1 cut(s) 97
BsuRI GGCC 7 cut(s) 99, 206, 475, 578, 815, 1175, 1244
BtgI CCRYGG 1 cut(s) 303
BtgZI GCGATG 2 cut(s) 687, 901
BtsCI GGATG 8 cut(s) 134, 210, 664, 836, 1186, 1255, 1324, 1516
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 4 cut(s) 257, 665, 883, 888
BveI ACCTGC 2 cut(s) 531, 583
CciI TCATGA 1 cut(s) 646
Cfr13I GGNCC 1 cut(s) 474
Csp6I GTAC 3 cut(s) 4, 331, 1598
CviAII CATG 6 cut(s) 304, 322, 557, 647, 896, 1616
CviQI GTAC 3 cut(s) 4, 331, 1598
DdeI CTNAG 2 cut(s) 152, 1687
DraI TTTAAA 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 97
EagI CGGCCG 1 cut(s) 97
Eam1104I CTCTTC 3 cut(s) 497, 1486, 1678
EarI CTCTTC 3 cut(s) 497, 1486, 1678
EciI GGCGGA 4 cut(s) 290, 323, 1185, 1254
EclXI CGGCCG 1 cut(s) 97
Eco130I CCWWGG 3 cut(s) 303, 426, 573
Eco24I GRGCYC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 715
Eco52I CGGCCG 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 1679
EcoRII CCWGG 4 cut(s) 437, 1162, 1300, 1537
EcoT14I CCWWGG 3 cut(s) 303, 426, 573
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 3 cut(s) 303, 426, 573
FaeI CATG 6 cut(s) 307, 325, 560, 650, 899, 1619
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 1 cut(s) 614
FatI CATG 6 cut(s) 303, 321, 556, 646, 895, 1615
FauI CCCGC 2 cut(s) 251, 519
FbaI TGATCA 5 cut(s) 87, 643, 649, 1069, 1078
FokI GGATG 8 cut(s) 121, 197, 671, 823, 1173, 1242, 1311, 1523
FriOI GRGCYC 1 cut(s) 243
FspBI CTAG 2 cut(s) 347, 366
GsaI CCCAGC 2 cut(s) 746, 1373
GsuI CTGGAG 1 cut(s) 869
HaeIII GGCC 7 cut(s) 99, 206, 475, 578, 815, 1175, 1244
HapII CCGG 3 cut(s) 100, 317, 1601
Hin1II CATG 6 cut(s) 307, 325, 560, 650, 899, 1619
HpaII CCGG 3 cut(s) 100, 317, 1601
HphI GGTGA 8 cut(s) 292, 467, 562, 692, 896, 1329, 1344, 1641
Hpy166II GTNNAC 2 cut(s) 300, 683
Hpy188III TCNNGA 7 cut(s) 284, 317, 511, 647, 1520, 1550, 1679
Hpy8I GTNNAC 2 cut(s) 300, 683
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 6 cut(s) 425, 526, 826, 994, 1262, 1655
HpyCH4III ACNGT 4 cut(s) 53, 669, 751, 1184
HpyCH4IV ACGT 1 cut(s) 790
HpyCH4V TGCA 7 cut(s) 26, 702, 807, 944, 1119, 1180, 1348
HpyF10VI GCNNNNNNNGC 2 cut(s) 804, 1511
HpyF3I CTNAG 2 cut(s) 152, 1687
HpySE526I ACGT 1 cut(s) 790
Hsp92II CATG 6 cut(s) 307, 325, 560, 650, 899, 1619
Kpn2I TCCGGA 1 cut(s) 316
Ksp22I TGATCA 5 cut(s) 87, 643, 649, 1069, 1078
LmnI GCTCC 4 cut(s) 145, 325, 440, 991
Lsp1109I GCAGC 9 cut(s) 105, 135, 686, 791, 896, 918, 928, 1103, 1492
LweI GCATC 2 cut(s) 991, 1501
MaeI CTAG 2 cut(s) 347, 366
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 4 cut(s) 455, 884, 1350, 1715
MbiI CCGCTC 1 cut(s) 328
MflI RGATCY 4 cut(s) 190, 507, 731, 1086
MhlI GDGCHC 2 cut(s) 243, 1376
MluCI AATT 7 cut(s) 175, 278, 580, 947, 1489, 1624, 1629
MlyI GAGTC 4 cut(s) 163, 305, 1427, 1664
MmeI TCCRAC 1 cut(s) 162
MroI TCCGGA 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 1563
MseI TTAA 2 cut(s) 354, 1628
MslI CAYNNNNRTG 2 cut(s) 900, 1461
MspA1I CMGCKG 4 cut(s) 96, 847, 909, 1109
MspI CCGG 3 cut(s) 100, 317, 1601
MspR9I CCNGG 5 cut(s) 439, 1164, 1302, 1539, 1602
MvaI CCWGG 4 cut(s) 439, 1164, 1302, 1539
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 804, 1511
NciI CCSGG 1 cut(s) 1602
NcoI CCATGG 1 cut(s) 303
NlaIII CATG 6 cut(s) 307, 325, 560, 650, 899, 1619
NlaIV GGNNCC 4 cut(s) 192, 436, 733, 1375
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 4 cut(s) 455, 884, 1350, 1715
NspV TTCGAA 1 cut(s) 930
PaeR7I CTCGAG 1 cut(s) 1679
PagI TCATGA 1 cut(s) 646
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 1563
PfeI GAWTC 9 cut(s) 126, 465, 865, 1130, 1397, 1453, 1516, 1553, 1559
PfoI TCCNGGA 1 cut(s) 437
PleI GAGTC 4 cut(s) 162, 305, 1427, 1664
PpsI GAGTC 4 cut(s) 162, 305, 1427, 1664
Psp6I CCWGG 4 cut(s) 437, 1162, 1300, 1537
PspFI CCCAGC 2 cut(s) 742, 1369
PspGI CCWGG 4 cut(s) 437, 1162, 1300, 1537
PspN4I GGNNCC 4 cut(s) 192, 436, 733, 1375
PspPI GGNCC 1 cut(s) 474
PstI CTGCAG 4 cut(s) 704, 809, 946, 1350
PsuI RGATCY 4 cut(s) 190, 507, 731, 1086
PvuII CAGCTG 3 cut(s) 847, 909, 1109
RsaI GTAC 3 cut(s) 5, 332, 1599
RsaNI GTAC 3 cut(s) 4, 331, 1598
RseI CAYNNNNRTG 2 cut(s) 900, 1461
SaqAI TTAA 2 cut(s) 354, 1628
Sau96I GGNCC 1 cut(s) 474
SchI GAGTC 4 cut(s) 163, 305, 1427, 1664
ScrFI CCNGG 5 cut(s) 439, 1164, 1302, 1539, 1602
SduI GDGCHC 2 cut(s) 243, 1376
SfaNI GCATC 2 cut(s) 991, 1501
SfcI CTRYAG 4 cut(s) 700, 805, 942, 1346
Sfr274I CTCGAG 1 cut(s) 1679
SfuI TTCGAA 1 cut(s) 930
SlaI CTCGAG 1 cut(s) 1679
SmiMI CAYNNNNRTG 2 cut(s) 900, 1461
SmlI CTYRAG 1 cut(s) 1679
SmoI CTYRAG 1 cut(s) 1679
Sse9I AATT 7 cut(s) 175, 278, 580, 947, 1489, 1624, 1629
SspI AATATT 1 cut(s) 1415
SspMI CTAG 2 cut(s) 347, 366
StyD4I CCNGG 5 cut(s) 437, 1162, 1300, 1537, 1600
StyI CCWWGG 3 cut(s) 303, 426, 573
TaaI ACNGT 4 cut(s) 53, 669, 751, 1184
TaiI ACGT 1 cut(s) 793
TaqI TCGA 3 cut(s) 201, 930, 1680
TasI AATT 7 cut(s) 175, 278, 580, 947, 1489, 1624, 1629
TauI GCSGC 2 cut(s) 99, 618
TfiI GAWTC 9 cut(s) 126, 465, 865, 1130, 1397, 1453, 1516, 1553, 1559
Tru1I TTAA 2 cut(s) 354, 1628
Tru9I TTAA 2 cut(s) 354, 1628
TscAI CASTG 4 cut(s) 264, 672, 883, 895
TseFI GTSAC 4 cut(s) 455, 884, 1350, 1715
TseI GCWGC 9 cut(s) 93, 148, 699, 804, 906, 909, 941, 1116, 1505
Tsp45I GTSAC 4 cut(s) 455, 884, 1350, 1715
TspDTI ATGAA 8 cut(s) 795, 951, 1113, 1244, 1407, 1410, 1473, 1479
TspRI CASTG 4 cut(s) 264, 672, 883, 895
XapI RAATTY 2 cut(s) 278, 947
XcmI CCANNNNNNNNNTGG 1 cut(s) 920
XhoI CTCGAG 1 cut(s) 1679
XmnI GAANNNNTTC 1 cut(s) 1563
XspI CTAG 2 cut(s) 347, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.