RLG00000027718
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002549
Physical Location & Seq
Forward (+)
14302282 .. 14305236
2955 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027718

Sequence Viewer

Length: 1158 bp
ATGATGATGAGCAGCGGCCGCATCACACTTCCCAAGGGTTTCCGATTCCGGCCCTCCGATGAGGAGCTGCTGAGTCATTACTTGGAGAAGAAGAATCAGCGCAAGGATCCCGAAATGGAGGCCATCATCCCTGAAATCAATGTGTGCGAGCACGAGCCTCGCGACTTACCAGGCCTGGTGTTCACAAGGGCGGTATTTCTGGAGAGGGAGTGGTTCACCATGGCGGACTCTCCGGATATGGAGTGGTACTTCTTCAGTCCGCGAGTTTTTAAACACAGCAAAAGCAAAAGCACTCGGTCCAACAGGACCACGGAGGAAGGCTACTGGAAGAAGCAAGGCAAGGACCGCAGAATCACTCAAGCACGTTCTGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCAAACTGGAGTGCAGAAAAAACAGAAGACTGACTGGGTTATTCATGAGTATTATCTCACCAAGGCCGATTCTAATGAGCAGATCGGGGACTTTGTTCTCTGCCGCTTGAAGAAAAAGTCCGACAAGTCTGATCATGATGAGCAGGAAGGTCCATTCTGCGGTGGAGGTGGACCTAGTCGCGGTAGCTGCAGTATGGCCTTCATTAATGTTGAAATCCAAGCATCCAAAGAGCTGGGAAATGTTCTTTCGATTTCTGTTGAAGGTCAACCTGATAGCTGCAATTCATCTGATTCCGATATGGTTGAAGAGCTACTTGATAAGCCAGGAAATCAACCTCCGCCACCTCAACTGCAGTCTCCAATAAAGCTGGGTAATGTTTCACACACCACCAATGTTCATATTGATGAATATCGTAAGAGGAAATATCAATTTGCGGATAATGACTCTTCTACTAAAAATAATCATATTTCAACCAATGATGTTGATGAACTAGTTAGCAACACTTCATCTTATTCTGAAAGTCATGCTGCAGATGCTATTCCAAAGAGCAAGTCCACCAAGGGCAGTTTGGCCCTGTTGTCACAAGCACTACGTCGATTTCTGGCCCTGGGGCGTGACCCCAAGGGTTTACGACATATTTGCTCATGGGGAGATGGGACGAGCACTGGGTTGATTGCTGACCAAGTTTTACCAAAGGGTGGGAAACCTGGTCTCTTTGAGACCTGGGACAAGCTTTGCGTCGATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

386

Amino Acids

43.45

Weight (kDa)

7.61

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 154 8.4e-33 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1106
AccII CGCG 3 cut(s) 162, 262, 588
AccIII TCCGGA 1 cut(s) 232
AclWI GGATC 3 cut(s) 101, 114, 401
AcoI YGGCCR 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 3 cut(s) 566, 587, 1106
AgsI TTSAA 5 cut(s) 517, 620, 668, 713, 879
AhlI ACTAGT 1 cut(s) 898
AjnI CCWGG 6 cut(s) 169, 174, 730, 1014, 1114, 1130
AluBI AGCT 7 cut(s) 67, 594, 640, 684, 718, 775, 1141
AluI AGCT 7 cut(s) 67, 594, 640, 684, 718, 775, 1141
Alw21I GWGCWC 2 cut(s) 153, 1073
Alw26I GTCTC 3 cut(s) 768, 1121, 1124
AlwI GGATC 3 cut(s) 101, 114, 401
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 8 cut(s) 16, 50, 120, 172, 471, 603, 978, 1011
ApeKI GCWGC 5 cut(s) 12, 67, 594, 684, 935
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
AseI ATTAAT 1 cut(s) 612
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 8 cut(s) 51, 297, 306, 343, 557, 578, 979, 1012
AsuHPI GGTGA 2 cut(s) 208, 457
AvaII GGWCC 5 cut(s) 297, 306, 343, 557, 578
BamHI GGATCC 1 cut(s) 106
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 2 cut(s) 153, 1073
BbvI GCAGC 5 cut(s) 24, 54, 581, 671, 922
BccI CCATC 2 cut(s) 131, 1055
BcgI CGANNNNNNTGC 4 cut(s) 140, 174, 1029, 1063
BciT130I CCWGG 6 cut(s) 171, 176, 732, 1016, 1116, 1132
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 3 cut(s) 768, 1121, 1124
BcuI ACTAGT 1 cut(s) 898
BfaI CTAG 3 cut(s) 582, 899, 1156
BfmI CTRYAG 3 cut(s) 595, 758, 936
BisI GCNGC 8 cut(s) 13, 16, 19, 68, 511, 595, 685, 936
BlsI GCNGC 8 cut(s) 14, 17, 20, 69, 512, 596, 686, 937
Bme1390I CCNGG 6 cut(s) 171, 176, 732, 1016, 1116, 1132
Bme18I GGWCC 5 cut(s) 297, 306, 343, 557, 578
BmgT120I GGNCC 8 cut(s) 51, 297, 306, 343, 557, 578, 979, 1012
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 6 cut(s) 171, 176, 732, 1016, 1116, 1132
BmrI ACTGGG 2 cut(s) 451, 1083
BmsI GCATC 3 cut(s) 30, 638, 931
BmuI ACTGGG 2 cut(s) 451, 1083
BpiI GAAGAC 1 cut(s) 440
BpmI CTGGAG 2 cut(s) 221, 435
BpuEI CTTGAG 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 816
BsaI GGTCTC 2 cut(s) 1121, 1124
BsaJI CCNNGG 9 cut(s) 33, 219, 309, 468, 966, 1014, 1015, 1029, 1131
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 566, 587, 1106
Bse1I ACTGG 4 cut(s) 329, 418, 446, 1078
Bse8I GATNNNNATC 1 cut(s) 816
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 6 cut(s) 171, 176, 732, 1016, 1116, 1132
BseDI CCNNGG 9 cut(s) 33, 219, 309, 468, 966, 1014, 1015, 1029, 1131
BseGI GGATG 2 cut(s) 126, 629
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 3 cut(s) 566, 587, 1106
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 4 cut(s) 329, 418, 446, 1078
BseRI GAGGAG 1 cut(s) 77
BseX3I CGGCCG 1 cut(s) 16
BseXI GCAGC 5 cut(s) 24, 54, 581, 671, 922
BseYI CCCAGC 2 cut(s) 640, 775
BsgI GTGCAG 1 cut(s) 440
Bsh1236I CGCG 3 cut(s) 162, 262, 588
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 8 cut(s) 18, 52, 122, 174, 473, 605, 980, 1013
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 153, 1073
BsiSI CCGG 2 cut(s) 49, 233
BslFI GGGAC 3 cut(s) 509, 1078, 1148
BslI CCNNNNNNNGG 3 cut(s) 566, 587, 1106
BsmAI GTCTC 3 cut(s) 768, 1121, 1124
BsmFI GGGAC 3 cut(s) 509, 1078, 1148
BsnI GGCC 8 cut(s) 18, 52, 122, 174, 473, 605, 980, 1013
Bso31I GGTCTC 2 cut(s) 1121, 1124
Bsp1286I GDGCHC 2 cut(s) 153, 1073
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 5 cut(s) 106, 378, 393, 489, 538
Bsp19I CCATGG 1 cut(s) 219
Bsp68I TCGCGA 1 cut(s) 162
BspANI GGCC 8 cut(s) 18, 52, 122, 174, 473, 605, 980, 1013
BspCNI CTCAG 1 cut(s) 63
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 3 cut(s) 162, 262, 588
BspHI TCATGA 2 cut(s) 451, 541
BspLI GGNNCC 1 cut(s) 108
BspMAI CTGCAG 3 cut(s) 599, 762, 940
BspPI GGATC 3 cut(s) 101, 114, 401
BspQI GCTCTTC 1 cut(s) 708
BspTNI GGTCTC 2 cut(s) 1121, 1124
BsrI ACTGG 4 cut(s) 329, 418, 446, 1078
BssECI CCNNGG 9 cut(s) 33, 219, 309, 468, 966, 1014, 1015, 1029, 1131
BssMI GATC 5 cut(s) 106, 378, 393, 489, 538
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 5 cut(s) 33, 219, 468, 966, 1029
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 6 cut(s) 171, 176, 732, 1016, 1116, 1132
Bst6I CTCTTC 3 cut(s) 383, 708, 859
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 2 cut(s) 219, 309
BstF5I GGATG 2 cut(s) 126, 629
BstFNI CGCG 3 cut(s) 162, 262, 588
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 5 cut(s) 109, 381, 396, 492, 541
BstMAI GTCTC 3 cut(s) 768, 1121, 1124
BstMBI GATC 5 cut(s) 106, 378, 393, 489, 538
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 4 cut(s) 18, 345, 594, 941
BstNI CCWGG 6 cut(s) 171, 176, 732, 1016, 1116, 1132
BstSCI CCNGG 6 cut(s) 169, 174, 730, 1014, 1114, 1130
BstSFI CTRYAG 3 cut(s) 595, 758, 936
BstUI CGCG 3 cut(s) 162, 262, 588
BstV1I GCAGC 5 cut(s) 24, 54, 581, 671, 922
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 2 cut(s) 106, 393
BstXI CCANNNNNNTGG 1 cut(s) 640
BstYI RGATCY 2 cut(s) 106, 393
BstZI CGGCCG 1 cut(s) 16
BsuRI GGCC 8 cut(s) 18, 52, 122, 174, 473, 605, 980, 1013
BtgI CCRYGG 2 cut(s) 219, 309
BtsCI GGATG 2 cut(s) 126, 629
BtsIMutI CAGTG 1 cut(s) 1071
BtuMI TCGCGA 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 149
CciI TCATGA 2 cut(s) 451, 541
CciNI GCGGCCGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 8 cut(s) 51, 297, 306, 343, 557, 578, 979, 1012
CseI GACGC 1 cut(s) 1135
CsiI ACCWGGT 1 cut(s) 1114
Csp6I GTAC 1 cut(s) 247
CviAII CATG 5 cut(s) 220, 452, 542, 932, 1053
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 71
DpnI GATC 5 cut(s) 108, 380, 395, 491, 540
DpnII GATC 5 cut(s) 106, 378, 393, 489, 538
DraI TTTAAA 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 16
EagI CGGCCG 1 cut(s) 16
Eam1104I CTCTTC 3 cut(s) 383, 708, 859
EarI CTCTTC 3 cut(s) 383, 708, 859
EciI GGCGGA 2 cut(s) 239, 735
EclXI CGGCCG 1 cut(s) 16
Eco130I CCWWGG 5 cut(s) 33, 219, 468, 966, 1029
Eco147I AGGCCT 1 cut(s) 174
Eco31I GGTCTC 2 cut(s) 1121, 1124
Eco47I GGWCC 5 cut(s) 297, 306, 343, 557, 578
Eco52I CGGCCG 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 238
EcoRII CCWGG 6 cut(s) 169, 174, 730, 1014, 1114, 1130
EcoT14I CCWWGG 5 cut(s) 33, 219, 468, 966, 1029
ErhI CCWWGG 5 cut(s) 33, 219, 468, 966, 1029
FaeI CATG 5 cut(s) 223, 455, 545, 935, 1056
FalI AAGNNNNNCTT 4 cut(s) 380, 412, 705, 737
FaqI GGGAC 3 cut(s) 509, 1078, 1148
FatI CATG 5 cut(s) 219, 451, 541, 931, 1052
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 8 cut(s) 13, 16, 19, 68, 511, 595, 685, 936
FokI GGATG 2 cut(s) 113, 616
Fsp4HI GCNGC 8 cut(s) 13, 16, 19, 68, 511, 595, 685, 936
FspBI CTAG 3 cut(s) 582, 899, 1156
GlaI GCGC 1 cut(s) 101
GluI GCNGC 8 cut(s) 13, 16, 19, 68, 511, 595, 685, 936
GsaI CCCAGC 2 cut(s) 644, 779
GsuI CTGGAG 2 cut(s) 221, 435
HaeIII GGCC 8 cut(s) 18, 52, 122, 174, 473, 605, 980, 1013
HapII CCGG 2 cut(s) 49, 233
HgaI GACGC 1 cut(s) 1135
HhaI GCGC 1 cut(s) 102
Hin1II CATG 5 cut(s) 223, 455, 545, 935, 1056
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 674
HindII GTYRAC 1 cut(s) 674
HindIII AAGCTT 1 cut(s) 1139
HinfI GANTC 8 cut(s) 45, 73, 94, 227, 351, 476, 698, 851
HpaII CCGG 2 cut(s) 49, 233
HphI GGTGA 2 cut(s) 208, 457
Hpy166II GTNNAC 6 cut(s) 183, 216, 578, 674, 963, 1037
Hpy188I TCNGA 8 cut(s) 44, 58, 370, 529, 538, 697, 703, 925
Hpy188III TCNNGA 7 cut(s) 110, 161, 200, 233, 397, 452, 542
Hpy8I GTNNAC 6 cut(s) 183, 216, 578, 674, 963, 1037
Hpy99I CGWCG 2 cut(s) 1005, 1151
HpyAV CCTTC 5 cut(s) 311, 412, 548, 616, 662
HpyCH4IV ACGT 2 cut(s) 364, 1000
HpyCH4V TGCA 5 cut(s) 421, 597, 687, 760, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 345, 594, 941
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 2 cut(s) 364, 1000
Hsp92II CATG 5 cut(s) 223, 455, 545, 935, 1056
HspAI GCGC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 5 cut(s) 106, 378, 393, 489, 538
LguI GCTCTTC 1 cut(s) 708
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 5 cut(s) 24, 54, 581, 671, 922
LweI GCATC 3 cut(s) 30, 638, 931
MabI ACCWGGT 1 cut(s) 1114
MaeI CTAG 3 cut(s) 582, 899, 1156
MaeII ACGT 2 cut(s) 364, 1000
MaeIII GTNAC 2 cut(s) 987, 1022
MalI GATC 5 cut(s) 108, 380, 395, 491, 540
MboI GATC 5 cut(s) 106, 378, 393, 489, 538
MboII GAAGA 9 cut(s) 100, 103, 244, 340, 400, 445, 529, 725, 846
MflI RGATCY 2 cut(s) 106, 393
MhlI GDGCHC 2 cut(s) 153, 1073
MluCI AATT 2 cut(s) 688, 836
MlyI GAGTC 3 cut(s) 82, 221, 845
MmeI TCCRAC 2 cut(s) 324, 552
MroI TCCGGA 1 cut(s) 232
MseI TTAA 2 cut(s) 270, 612
MslI CAYNNNNRTG 1 cut(s) 810
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 2 cut(s) 49, 233
MspR9I CCNGG 6 cut(s) 171, 176, 732, 1016, 1116, 1132
MvaI CCWGG 6 cut(s) 171, 176, 732, 1016, 1116, 1132
MvnI CGCG 3 cut(s) 162, 262, 588
MwoI GCNNNNNNNGC 4 cut(s) 18, 345, 594, 941
NcoI CCATGG 1 cut(s) 219
NdeII GATC 5 cut(s) 106, 378, 393, 489, 538
NlaIII CATG 5 cut(s) 223, 455, 545, 935, 1056
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 2 cut(s) 987, 1022
NotI GCGGCCGC 1 cut(s) 16
NruI TCGCGA 1 cut(s) 162
PagI TCATGA 2 cut(s) 451, 541
PasI CCCWGGG 1 cut(s) 1015
PceI AGGCCT 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 708
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 5 cut(s) 45, 94, 351, 476, 698
PflFI GACNNNGTC 1 cut(s) 582
PflMI CCANNNNNTGG 1 cut(s) 1106
PkrI GCNGC 8 cut(s) 14, 17, 20, 69, 512, 596, 686, 937
PleI GAGTC 3 cut(s) 81, 221, 845
PpsI GAGTC 3 cut(s) 81, 221, 845
PshBI ATTAAT 1 cut(s) 612
Psp6I CCWGG 6 cut(s) 169, 174, 730, 1014, 1114, 1130
PspFI CCCAGC 2 cut(s) 640, 775
PspGI CCWGG 6 cut(s) 169, 174, 730, 1014, 1114, 1130
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 8 cut(s) 51, 297, 306, 343, 557, 578, 979, 1012
PstI CTGCAG 3 cut(s) 599, 762, 940
PsuI RGATCY 2 cut(s) 106, 393
PsyI GACNNNGTC 1 cut(s) 582
RruI TCGCGA 1 cut(s) 162
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 810
SapI GCTCTTC 1 cut(s) 708
SaqAI TTAA 2 cut(s) 270, 612
SatI GCNGC 8 cut(s) 13, 16, 19, 68, 511, 595, 685, 936
Sau3AI GATC 5 cut(s) 106, 378, 393, 489, 538
Sau96I GGNCC 8 cut(s) 51, 297, 306, 343, 557, 578, 979, 1012
SchI GAGTC 3 cut(s) 82, 221, 845
ScrFI CCNGG 6 cut(s) 171, 176, 732, 1016, 1116, 1132
SduI GDGCHC 2 cut(s) 153, 1073
SexAI ACCWGGT 1 cut(s) 1114
SfaNI GCATC 3 cut(s) 30, 638, 931
SfcI CTRYAG 3 cut(s) 595, 758, 936
SinI GGWCC 5 cut(s) 297, 306, 343, 557, 578
SmiMI CAYNNNNRTG 1 cut(s) 810
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
SpeI ACTAGT 1 cut(s) 898
Sse9I AATT 2 cut(s) 688, 836
SseBI AGGCCT 1 cut(s) 174
SspMI CTAG 3 cut(s) 582, 899, 1156
StuI AGGCCT 1 cut(s) 174
StyD4I CCNGG 6 cut(s) 169, 174, 730, 1014, 1114, 1130
StyI CCWWGG 5 cut(s) 33, 219, 468, 966, 1029
TaiI ACGT 2 cut(s) 367, 1003
TaqI TCGA 3 cut(s) 656, 1003, 1149
TaqII GACCGA 1 cut(s) 285
TasI AATT 2 cut(s) 688, 836
TauI GCSGC 3 cut(s) 18, 21, 513
TfiI GAWTC 5 cut(s) 45, 94, 351, 476, 698
Tru1I TTAA 2 cut(s) 270, 612
Tru9I TTAA 2 cut(s) 270, 612
TscAI CASTG 1 cut(s) 1078
TseFI GTSAC 2 cut(s) 987, 1022
TseI GCWGC 5 cut(s) 12, 67, 594, 684, 935
Tsp45I GTSAC 2 cut(s) 987, 1022
TspDTI ATGAA 7 cut(s) 440, 598, 681, 794, 828, 903, 909
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 1078
Tth111I GACNNNGTC 1 cut(s) 582
Van91I CCANNNNNTGG 1 cut(s) 1106
VpaK11BI GGWCC 5 cut(s) 297, 306, 343, 557, 578
VspI ATTAAT 1 cut(s) 612
XcmI CCANNNNNNNNNTGG 1 cut(s) 973
XspI CTAG 3 cut(s) 582, 899, 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.