FvH4_7g18210
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002549
Physical Location & Seq
Forward (+)
15269559 .. 15273080
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18210.t1

Sequence Viewer

Length: 1395 bp
ATGAGCTACGGTCCAGTTCCAAAGGGTCTCCGGTTCATGCCCTCCGATGAGGTGCTGCTGAGTCACTACTTGCAGAAGAAGAATCAGCGCGAGGACCCCGAGATCACGGCCATCATCCCTGAGATTGATATGACCAAGCACGAGCCTCGCGACTTGCCCGCACTGGTGTTCGCAAGGGCGGAGAATCTGAACAAGGAGTGGTTCGCAGACTCTCCGGACATGGAGTGGTACTTCTTCAGTCCTATAGTTTTGAAGCACAGCAACAGCAAAAGCAAAAGCACTAAGATCAACAGGACTACGAAGGAAGGCTCCTGGAAGAAGCAAGGCAACGATCGAAGGATCACTGGGGCCTGTTCTGATAAGCAGATAGGGGGGAGGAGGATCTTGACCTTCTACCTTTCGAATAAACAGAAGACCGACTGGGTTATTCACGAGTTTTATCTCACTAAGGCCGATTCTGATGAGCAGATCGGCGACTTTGTTCTATGCCGCTTGAAGGACAACCGCTTGAAGAAGTCGGGCAAGTCTGATCAAGCATTCAGCTGTAAGCTGGGAAATGTTGTTGTGATTCCCAAAGGCAATGATGATGAAGCTAAAGCTGAACATGGGGGAGGTAGCCGTAGTATGGTCTCAAATGTTGAAAGTCCAGCATCCAAACAGCTGGAAGATGTTCTTCCGATTCCCTATGGCAATGATGATGACGCTGAACATGGTGGTGGTAGCTGCCTCAACGTCCCTGGTATGCTTACAAAAGCAGAAGAATACCAAGGATTCAATGCACTACAAGATGCTGTTTTTGAATCTAATGGCAATGAGCAAGAATTTGGAGGCTCACAAACTGGTCCTTGTTATATAGATAAGAATGATCGTTCGGTCTCCATTGAAGGTCAACCTGATTCTGAGATGGTTAAAGAGCTACTTCACAAGGCAGTAGATCTGGCCTTACCCCATCCACCTCCGTCAACTCAACTGCAGTCACCAATATACACAAAGCTGGGCACCAACAATTTCCTTGATGATGAATGTCATAAGAGGAAAAATCCATTTGGGGATAGTGAGCCTTTTCTTACGAAGAAGAATCATACTGATGAAGTAGATAGCAACACTTCATCTAATTCTGAAAATCAAGCTACAGCTGCGATTCCAGAGGGATGTTCTCAACCAGGAGGAAATCTGGGGTCTGATTTGTTTATGTCACAGACACTACCATCAATAAACAGAGAACCGAGAGATCTTCCCCATGACAATAATTTTATTGAATGGAATGATTTGCCATCTATAATAGAAGGCTTTGAGTTATCTCTCGCGAATTTCTCACATACATTTATTGATCAAGGTATCAGTGATGACATAAACATTGAAGGCGCCTCTGCATATGGTTGGAGTGCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

465

Amino Acids

51.54

Weight (kDa)

5.0

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 147 4e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 998, 1364
AccII CGCG 3 cut(s) 90, 150, 1307
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 4 cut(s) 159, 179, 490, 505
AclWI GGATC 2 cut(s) 347, 389
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 2 cut(s) 821, 1309
AcuI CTGAAG 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 1365
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 496, 625
AgsI TTSAA 9 cut(s) 253, 496, 511, 641, 775, 800, 884, 1259, 1361
AjnI CCWGG 3 cut(s) 311, 736, 1162
Alw26I GTCTC 3 cut(s) 32, 634, 880
AlwI GGATC 2 cut(s) 347, 389
Ama87I CYCGRG 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 4 cut(s) 108, 348, 450, 939
ApeKI GCWGC 3 cut(s) 55, 723, 1136
ApoI RAATTY 2 cut(s) 821, 1309
Asp700I GAANNNNTTC 1 cut(s) 669
AspLEI GCGC 2 cut(s) 90, 1367
AspS9I GGNCC 4 cut(s) 11, 94, 348, 842
AsuHPI GGTGA 1 cut(s) 969
AsuII TTCGAA 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 3 cut(s) 11, 94, 842
BaeGI GKGCMC 1 cut(s) 1001
BanI GGYRCC 2 cut(s) 998, 1364
BauI CACGAG 2 cut(s) 140, 431
BbsI GAAGAC 1 cut(s) 419
BbvI GCAGC 3 cut(s) 42, 710, 1123
BccI CCATC 5 cut(s) 119, 898, 957, 1216, 1282
BceAI ACGGC 2 cut(s) 123, 603
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 3 cut(s) 313, 738, 1164
BclI TGATCA 2 cut(s) 529, 1330
BcoDI GTCTC 3 cut(s) 32, 634, 880
BfmI CTRYAG 3 cut(s) 243, 971, 1131
BfoI RGCGCY 1 cut(s) 1368
BglII AGATCT 2 cut(s) 934, 1231
BisI GCNGC 4 cut(s) 56, 490, 724, 1137
BlsI GCNGC 4 cut(s) 57, 491, 725, 1138
Bme1390I CCNGG 3 cut(s) 313, 738, 1164
Bme18I GGWCC 3 cut(s) 11, 94, 842
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 4 cut(s) 11, 94, 348, 842
BmiI GGNNCC 5 cut(s) 96, 310, 349, 1000, 1366
BmrFI CCNGG 3 cut(s) 313, 738, 1164
BmrI ACTGGG 2 cut(s) 354, 430
BmsI GCATC 2 cut(s) 659, 778
BmuI ACTGGG 2 cut(s) 354, 430
BpiI GAAGAC 1 cut(s) 419
Bpu14I TTCGAA 1 cut(s) 401
BsaHI GRCGYC 1 cut(s) 1365
BsaI GGTCTC 3 cut(s) 32, 634, 880
BsaJI CCNNGG 2 cut(s) 736, 766
BsaWI WCCGGW 2 cut(s) 30, 214
Bsc4I CCNNNNNNNGG 2 cut(s) 496, 625
Bse1I ACTGG 5 cut(s) 14, 168, 349, 425, 844
Bse3DI GCAATG 3 cut(s) 586, 697, 817
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 3 cut(s) 313, 738, 1164
BseDI CCNNGG 2 cut(s) 736, 766
BseGI GGATG 4 cut(s) 114, 650, 949, 1157
BseLI CCNNNNNNNGG 2 cut(s) 496, 625
BseMI GCAATG 3 cut(s) 586, 697, 817
BseMII CTCAG 3 cut(s) 50, 111, 891
BseNI ACTGG 5 cut(s) 14, 168, 349, 425, 844
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 1 cut(s) 1001
BseXI GCAGC 3 cut(s) 42, 710, 1123
BseYI CCCAGC 2 cut(s) 550, 994
Bsh1236I CGCG 3 cut(s) 90, 150, 1307
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 4 cut(s) 110, 350, 452, 941
BshNI GGYRCC 2 cut(s) 998, 1364
BsiEI CGRYCG 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 31, 215
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 2 cut(s) 496, 625
BsmAI GTCTC 3 cut(s) 32, 634, 880
BsmFI GGGAC 1 cut(s) 719
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 4 cut(s) 110, 350, 452, 941
Bso31I GGTCTC 3 cut(s) 32, 634, 880
BsoBI CYCGRG 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 1001
Bsp13I TCCGGA 1 cut(s) 214
Bsp68I TCGCGA 2 cut(s) 150, 1307
BspACI CCGC 4 cut(s) 159, 179, 490, 505
BspANI GGCC 4 cut(s) 110, 350, 452, 941
BspCNI CTCAG 3 cut(s) 51, 112, 892
BspEI TCCGGA 1 cut(s) 214
BspFNI CGCG 3 cut(s) 90, 150, 1307
BspLI GGNNCC 5 cut(s) 96, 310, 349, 1000, 1366
BspMAI CTGCAG 1 cut(s) 975
BspPI GGATC 2 cut(s) 347, 389
BspT104I TTCGAA 1 cut(s) 401
BspT107I GGYRCC 2 cut(s) 998, 1364
BspTNI GGTCTC 3 cut(s) 32, 634, 880
BsrDI GCAATG 3 cut(s) 586, 697, 817
BsrI ACTGG 5 cut(s) 14, 168, 349, 425, 844
BssECI CCNNGG 2 cut(s) 736, 766
BssNI GRCGYC 1 cut(s) 1365
BssSI CACGAG 2 cut(s) 140, 431
BssT1I CCWWGG 1 cut(s) 766
Bst2BI CACGAG 2 cut(s) 140, 431
Bst2UI CCWGG 3 cut(s) 313, 738, 1164
Bst4CI ACNGT 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 1365
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 5 cut(s) 59, 120, 282, 447, 900
BstF5I GGATG 4 cut(s) 114, 650, 949, 1157
BstFNI CGCG 3 cut(s) 90, 150, 1307
BstH2I RGCGCY 1 cut(s) 1368
BstHHI GCGC 2 cut(s) 90, 1367
BstMAI GTCTC 3 cut(s) 32, 634, 880
BstMCI CGRYCG 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 1136
BstNI CCWGG 3 cut(s) 313, 738, 1164
BstSCI CCNGG 3 cut(s) 311, 736, 1162
BstSFI CTRYAG 3 cut(s) 243, 971, 1131
BstSLI GKGCMC 1 cut(s) 1001
BstUI CGCG 3 cut(s) 90, 150, 1307
BstV1I GCAGC 3 cut(s) 42, 710, 1123
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 3 cut(s) 381, 934, 1231
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 3 cut(s) 381, 934, 1231
BsuRI GGCC 4 cut(s) 110, 350, 452, 941
BtsCI GGATG 4 cut(s) 114, 650, 949, 1157
BtsIMutI CAGTG 3 cut(s) 161, 342, 1348
BtuMI TCGCGA 2 cut(s) 150, 1307
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 2 cut(s) 90, 1367
Cfr13I GGNCC 4 cut(s) 11, 94, 348, 842
CseI GACGC 1 cut(s) 710
Csp6I GTAC 1 cut(s) 229
CviAII CATG 5 cut(s) 37, 220, 605, 710, 1241
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 5 cut(s) 59, 120, 282, 447, 900
DinI GGCGCC 1 cut(s) 1366
EaeI YGGCCR 1 cut(s) 108
EciI GGCGGA 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 766
Eco31I GGTCTC 3 cut(s) 32, 634, 880
Eco47I GGWCC 3 cut(s) 11, 94, 842
Eco57I CTGAAG 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 98
EcoO109I RGGNCCY 2 cut(s) 94, 348
EcoRII CCWGG 3 cut(s) 311, 736, 1162
EcoT14I CCWWGG 1 cut(s) 766
EgeI GGCGCC 1 cut(s) 1366
EheI GGCGCC 1 cut(s) 1366
ErhI CCWWGG 1 cut(s) 766
FaeI CATG 5 cut(s) 40, 223, 608, 713, 1244
FalI AAGNNNNNCTT 4 cut(s) 657, 689, 903, 935
FaqI GGGAC 1 cut(s) 719
FatI CATG 5 cut(s) 36, 219, 604, 709, 1240
FauI CCCGC 1 cut(s) 166
FauNDI CATATG 1 cut(s) 1375
FbaI TGATCA 2 cut(s) 529, 1330
Fnu4HI GCNGC 4 cut(s) 56, 490, 724, 1137
FokI GGATG 4 cut(s) 101, 637, 936, 1164
Fsp4HI GCNGC 4 cut(s) 56, 490, 724, 1137
GlaI GCGC 2 cut(s) 89, 1366
GluI GCNGC 4 cut(s) 56, 490, 724, 1137
GsaI CCCAGC 2 cut(s) 554, 998
HaeII RGCGCY 1 cut(s) 1368
HaeIII GGCC 4 cut(s) 110, 350, 452, 941
HapII CCGG 2 cut(s) 31, 215
HgaI GACGC 1 cut(s) 710
HhaI GCGC 2 cut(s) 90, 1367
Hin1I GRCGYC 1 cut(s) 1365
Hin1II CATG 5 cut(s) 40, 223, 608, 713, 1244
Hin6I GCGC 2 cut(s) 88, 1365
HinP1I GCGC 2 cut(s) 88, 1365
HincII GTYRAC 2 cut(s) 890, 963
HindII GTYRAC 2 cut(s) 890, 963
HpaII CCGG 2 cut(s) 31, 215
HphI GGTGA 1 cut(s) 969
Hpy166II GTNNAC 2 cut(s) 890, 963
Hpy188III TCNNGA 6 cut(s) 149, 215, 385, 431, 1145, 1306
Hpy8I GTNNAC 2 cut(s) 890, 963
HpyAV CCTTC 8 cut(s) 295, 299, 330, 400, 490, 878, 1280, 1355
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 732
HpyCH4V TGCA 4 cut(s) 73, 779, 973, 1373
HpyF10VI GCNNNNNNNGC 1 cut(s) 1136
HpyF3I CTNAG 5 cut(s) 59, 120, 282, 447, 900
HpySE526I ACGT 1 cut(s) 732
Hsp92I GRCGYC 1 cut(s) 1365
Hsp92II CATG 5 cut(s) 40, 223, 608, 713, 1244
HspAI GCGC 2 cut(s) 88, 1365
KasI GGCGCC 1 cut(s) 1364
Kpn2I TCCGGA 1 cut(s) 214
Ksp22I TGATCA 2 cut(s) 529, 1330
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 3 cut(s) 42, 710, 1123
LweI GCATC 2 cut(s) 659, 778
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 3 cut(s) 62, 975, 1194
MflI RGATCY 3 cut(s) 381, 934, 1231
MhlI GDGCHC 1 cut(s) 1001
MluCI AATT 5 cut(s) 821, 1006, 1114, 1249, 1309
Mly113I GGCGCC 1 cut(s) 1365
MlyI GAGTC 2 cut(s) 70, 203
MmeI TCCRAC 1 cut(s) 1361
MroI TCCGGA 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 669
MseI TTAA 1 cut(s) 909
MslI CAYNNNNRTG 2 cut(s) 714, 1086
MspA1I CMGCKG 3 cut(s) 543, 661, 1136
MspI CCGG 2 cut(s) 31, 215
MspR9I CCNGG 3 cut(s) 313, 738, 1164
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 3 cut(s) 313, 738, 1164
MvnI CGCG 3 cut(s) 90, 150, 1307
MwoI GCNNNNNNNGC 1 cut(s) 1136
NarI GGCGCC 1 cut(s) 1365
NdeI CATATG 1 cut(s) 1375
NlaIII CATG 5 cut(s) 40, 223, 608, 713, 1244
NlaIV GGNNCC 5 cut(s) 96, 310, 349, 1000, 1366
NmuCI GTSAC 3 cut(s) 62, 975, 1194
NruI TCGCGA 2 cut(s) 150, 1307
NspV TTCGAA 1 cut(s) 401
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 1 cut(s) 536
PdmI GAANNNNTTC 1 cut(s) 669
PfoI TCCNGGA 1 cut(s) 311
PkrI GCNGC 4 cut(s) 57, 491, 725, 1138
Ple19I CGATCG 1 cut(s) 334
PleI GAGTC 2 cut(s) 69, 203
PluTI GGCGCC 1 cut(s) 1368
PpsI GAGTC 2 cut(s) 69, 203
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 3 cut(s) 311, 736, 1162
PspFI CCCAGC 2 cut(s) 550, 994
PspGI CCWGG 3 cut(s) 311, 736, 1162
PspN4I GGNNCC 5 cut(s) 96, 310, 349, 1000, 1366
PspPI GGNCC 4 cut(s) 11, 94, 348, 842
PspPPI RGGWCCY 1 cut(s) 94
PstI CTGCAG 1 cut(s) 975
PsuI RGATCY 3 cut(s) 381, 934, 1231
PvuI CGATCG 1 cut(s) 334
PvuII CAGCTG 3 cut(s) 543, 661, 1136
RruI TCGCGA 2 cut(s) 150, 1307
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 2 cut(s) 714, 1086
SaqAI TTAA 1 cut(s) 909
SatI GCNGC 4 cut(s) 56, 490, 724, 1137
Sau96I GGNCC 4 cut(s) 11, 94, 348, 842
SchI GAGTC 2 cut(s) 70, 203
ScrFI CCNGG 3 cut(s) 313, 738, 1164
SduI GDGCHC 1 cut(s) 1001
SfaNI GCATC 2 cut(s) 659, 778
SfcI CTRYAG 3 cut(s) 243, 971, 1131
SfoI GGCGCC 1 cut(s) 1366
SfuI TTCGAA 1 cut(s) 401
SinI GGWCC 3 cut(s) 11, 94, 842
SmiMI CAYNNNNRTG 2 cut(s) 714, 1086
Sse9I AATT 5 cut(s) 821, 1006, 1114, 1249, 1309
SsiI CCGC 4 cut(s) 159, 179, 490, 505
SspDI GGCGCC 1 cut(s) 1364
StyD4I CCNGG 3 cut(s) 311, 736, 1162
StyI CCWWGG 1 cut(s) 766
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 735
TaqI TCGA 2 cut(s) 334, 401
TaqII GACCGA 2 cut(s) 431, 862
TasI AATT 5 cut(s) 821, 1006, 1114, 1249, 1309
TauI GCSGC 1 cut(s) 492
Tru1I TTAA 1 cut(s) 909
Tru9I TTAA 1 cut(s) 909
TscAI CASTG 3 cut(s) 168, 349, 1348
TseFI GTSAC 3 cut(s) 62, 975, 1194
TseI GCWGC 3 cut(s) 55, 723, 1136
Tsp45I GTSAC 3 cut(s) 62, 975, 1194
TspDTI ATGAA 5 cut(s) 25, 603, 1035, 1098, 1104
TspGWI ACGGA 1 cut(s) 948
TspRI CASTG 3 cut(s) 168, 349, 1348
VpaK11BI GGWCC 3 cut(s) 11, 94, 842
XapI RAATTY 2 cut(s) 821, 1309
XmnI GAANNNNTTC 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.