Rh1AG300200
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002549
Physical Location & Seq
Reverse (-)
53229407 .. 53254136
24730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG300200.1

Sequence Viewer

Length: 1710 bp
ATGATGATGAGCAGAGGCCGCATCACACTTCCTAAGGGTTTCCGATTCCGGCCCTCCGATGAGGAGCTGCTGAGTCATTACTTGGAGAAGAAGAATCAGCGCAAGGATCCCGAAGTGGAGGCCATCATCCCTGAAATCAATGTGTGCGAGCACGAGCCTCGCGACTTACCAGCACTGGTGTTCAAAAGGGCGGAATTTCTGGACAAGGAGTGGTTCACCATGGCGGACTCTCCGGACATGGAGCGGTACTTCTTCAGTCCGCTAGTTTTTAAAAACAGCACTAGCAAAAGCAAAGGCAAAGGCAAAAGCACTCAAATCAACAGGGCTACCAAGGAAGGCTCCTGGAAGAAGCAAGGCGGTGACAAAAGAATCACTCGGCCCTATTCAGATAAGCAGATCGGGGGGAAGAGGATATTGACCTTCTACCTGCGGGATAAACAGAGGACTGACTGGGTTATCCATGAGTATTATCTCACCAAGGCCAATTCTGATGAGCAGGTCGGGGACTTTGTTCTCTGCCGCTTGAAGAACAAGTCAGGCAAGTTTGATCATGATCAGCAGCATGATCCAATGTGCGATGGAGGTGAACCTAATAGTGGTAGCTGCAGTATGGTCTCCAATGTTGAAGATCAAGGATCCAAAGAGCTGGGAACTGTTCTTCCGATTCCCAATATCAATGATGATGAAGCTGAACATGGTGGCGGTAGCTGCAGTATGGCCTTCAATGTTGAAAATCAACCATCCAAACAGCTGGAGAATGTTCTTCCGATTCCCAACCGCAGTGATGGTGACACTGAACATGGTGCTGGCAGCTGCAGTATGGCCTTCAATGTTGAAAATCAACCATCCAAACAGCTGGAGAATGTTCTTCCGATTCCCAACCGCAGTGATGGTGACACTGAACATGGTGGTGGCAGCTGCCACATCGCCTCTGGTTTCGAAAATGAAGCTGCAGAATTTGGTTTGCTTACAGAAGAAGAAATAAACCAGACATTCAAGGAGCTGATAGATGCTGTTTGGGAATATGATGACAATGAACAAGAAGTTAGAGGCTCACAAACTGATTTTTGTTATATTGATCAGAATGATCGTTGGATCTCTGTTGAAGATCAACCAGCTGATAGCCGCAATTCATCTGATTCCAATATGGTTGAAAAGCCACTTGATGAGCCAGGAAATCTGGGCTTACCCCTTCATCCACCTCCATCACCTCAACTGCAGTCACCAATATACACAAAGCTGGGCACCACCAATGTCCAAAATGATGAATCTCGTAAGAGGAAATATTCATTTGGGGATAATGACCCTTTTCTTACGAAGAAGAATCATATTGATGAAGTAGATAGCAACTCTTCATCTAATTCTGAAAATCAAGCTGCGGATGCGATTCCAGAGGGATATTCTCAACCAGGAGAAAATCTGGAATCTGAATCATTTCAGTCGCAGGAACTACCATCAATAAACAGAGAACCGGGAGATTTTCCCCATGACAATAATTTAATTGAATGGGGTAAGTTTTCACCTATAACAGAAGGTATTGACTCTTCTCTCGAGTTCTCAGATACATTTATTGATTGCTACCCCTGTGACGGAAACACCGAAGTCATCTCTGTATCGGTAAACGATTATTCTACATTAGCCATAGGAGAAACACCCAATGTAGCTAATCAACCTTTATTTATAGGAGAATATCAGTGGACGCCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

569

Amino Acids

63.87

Weight (kDa)

4.61

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 157 7e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 435, 487
AccB1I GGYRCC 1 cut(s) 1244
AccBSI CCGCTC 1 cut(s) 244
AccII CGCG 1 cut(s) 162
AccIII TCCGGA 1 cut(s) 232
AclWI GGATC 6 cut(s) 101, 114, 560, 630, 643, 1103
AcsI RAATTY 2 cut(s) 194, 956
AcuI CTGAAG 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 1700
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 596, 1589
AjnI CCWGG 3 cut(s) 341, 1171, 1408
AloI GAACNNNNNNTCC 2 cut(s) 643, 675
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 6 cut(s) 101, 114, 560, 630, 643, 1103
Ama87I CYCGRG 1 cut(s) 1550
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 7 cut(s) 16, 50, 120, 377, 480, 717, 822
ApoI RAATTY 2 cut(s) 194, 956
Asp700I GAANNNNTTC 1 cut(s) 1434
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 51, 378
AsuC2I CCSGG 1 cut(s) 1473
AsuHPI GGTGA 9 cut(s) 208, 371, 466, 596, 800, 905, 1200, 1215, 1512
AsuII TTCGAA 1 cut(s) 939
AvaI CYCGRG 1 cut(s) 1550
AxyI CCTNAGG 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 1247
BamHI GGATCC 2 cut(s) 106, 635
BanI GGYRCC 1 cut(s) 1244
BarI GAAGNNNNNNTAC 2 cut(s) 1528, 1560
BauI CACGAG 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 8 cut(s) 131, 572, 748, 779, 853, 884, 1213, 1462
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 3 cut(s) 343, 1173, 1410
BclI TGATCA 3 cut(s) 547, 553, 1078
BcnI CCSGG 1 cut(s) 1473
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 2 cut(s) 263, 282
BfmI CTRYAG 5 cut(s) 604, 709, 814, 951, 1217
BfuAI ACCTGC 2 cut(s) 435, 487
Bme1390I CCNGG 4 cut(s) 343, 1173, 1410, 1473
BmeT110I CYCGRG 1 cut(s) 1550
BmgT120I GGNCC 2 cut(s) 51, 378
BmiI GGNNCC 4 cut(s) 108, 340, 637, 1246
BmrFI CCNGG 4 cut(s) 343, 1173, 1410, 1473
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 3 cut(s) 30, 1000, 1372
BmuI ACTGGG 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 773, 878
Bpu14I TTCGAA 1 cut(s) 939
BpuMI CCSGG 1 cut(s) 1473
BsaBI GATNNNNATC 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 1700
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 3 cut(s) 219, 330, 477
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 1589
Bse1I ACTGG 2 cut(s) 180, 455
Bse21I CCTNAGG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 552
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 3 cut(s) 343, 1173, 1410
BseDI CCNNGG 3 cut(s) 219, 330, 477
BseGI GGATG 5 cut(s) 126, 740, 845, 1195, 1387
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 2 cut(s) 596, 1589
BseMII CTCAG 2 cut(s) 62, 1572
BseNI ACTGG 2 cut(s) 180, 455
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 1247
BseYI CCCAGC 2 cut(s) 646, 1240
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 7 cut(s) 18, 52, 122, 379, 482, 719, 824
BshNI GGYRCC 1 cut(s) 1244
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 1550
BsiSI CCGG 3 cut(s) 49, 233, 1472
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 2 cut(s) 596, 1589
BsmAI GTCTC 1 cut(s) 619
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 7 cut(s) 18, 52, 122, 379, 482, 719, 824
Bso31I GGTCTC 1 cut(s) 619
BsoBI CYCGRG 1 cut(s) 1550
Bsp119I TTCGAA 1 cut(s) 939
Bsp1286I GDGCHC 2 cut(s) 153, 1247
Bsp13I TCCGGA 1 cut(s) 232
Bsp19I CCATGG 1 cut(s) 219
Bsp68I TCGCGA 1 cut(s) 162
BspANI GGCC 7 cut(s) 18, 52, 122, 379, 482, 719, 824
BspCNI CTCAG 2 cut(s) 63, 1571
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 4 cut(s) 108, 340, 637, 1246
BspMAI CTGCAG 5 cut(s) 608, 713, 818, 955, 1221
BspMI ACCTGC 2 cut(s) 435, 487
BspPI GGATC 6 cut(s) 101, 114, 560, 630, 643, 1103
BspT104I TTCGAA 1 cut(s) 939
BspT107I GGYRCC 1 cut(s) 1244
BspTNI GGTCTC 1 cut(s) 619
BsrBI CCGCTC 1 cut(s) 244
BsrI ACTGG 2 cut(s) 180, 455
BssECI CCNNGG 3 cut(s) 219, 330, 477
BssNI GRCGYC 1 cut(s) 1700
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 3 cut(s) 219, 330, 477
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 3 cut(s) 343, 1173, 1410
Bst4CI ACNGT 2 cut(s) 655, 1707
Bst6I CTCTTC 3 cut(s) 401, 1357, 1549
BstACI GRCGYC 1 cut(s) 1700
BstBI TTCGAA 1 cut(s) 939
BstC8I GCNNGC 2 cut(s) 149, 808
BstDEI CTNAG 3 cut(s) 33, 71, 1558
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 5 cut(s) 126, 740, 845, 1195, 1387
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 619
BstMWI GCNNNNNNNGC 3 cut(s) 18, 708, 1382
BstNI CCWGG 3 cut(s) 343, 1173, 1410
BstSCI CCNGG 4 cut(s) 341, 1171, 1408, 1471
BstSFI CTRYAG 5 cut(s) 604, 709, 814, 951, 1217
BstSLI GKGCMC 1 cut(s) 1247
BstUI CGCG 1 cut(s) 162
BstX2I RGATCY 3 cut(s) 106, 635, 1095
BstXI CCANNNNNNTGG 3 cut(s) 646, 751, 856
BstYI RGATCY 3 cut(s) 106, 635, 1095
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 7 cut(s) 18, 52, 122, 379, 482, 719, 824
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 2 cut(s) 591, 910
BtsCI GGATG 5 cut(s) 126, 740, 845, 1195, 1387
BtsI GCAGTG 2 cut(s) 787, 892
BtsIMutI CAGTG 6 cut(s) 173, 787, 792, 892, 897, 1700
BtuMI TCGCGA 1 cut(s) 162
BveI ACCTGC 2 cut(s) 435, 487
Cac8I GCNNGC 2 cut(s) 149, 808
CciI TCATGA 1 cut(s) 550
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 51, 378
Csp6I GTAC 1 cut(s) 247
CviAII CATG 9 cut(s) 220, 238, 461, 551, 563, 695, 800, 905, 1487
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 3 cut(s) 33, 71, 1558
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 401, 1357, 1549
EarI CTCTTC 3 cut(s) 401, 1357, 1549
EciI GGCGGA 2 cut(s) 206, 239
Eco130I CCWWGG 3 cut(s) 219, 330, 477
Eco31I GGTCTC 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 1550
EcoRII CCWGG 3 cut(s) 341, 1171, 1408
EcoT14I CCWWGG 3 cut(s) 219, 330, 477
ErhI CCWWGG 3 cut(s) 219, 330, 477
FaeI CATG 9 cut(s) 223, 241, 464, 554, 566, 698, 803, 908, 1490
FaqI GGGAC 1 cut(s) 518
FatI CATG 9 cut(s) 219, 237, 460, 550, 562, 694, 799, 904, 1486
FauI CCCGC 1 cut(s) 423
FbaI TGATCA 3 cut(s) 547, 553, 1078
FokI GGATG 5 cut(s) 113, 727, 832, 1182, 1394
FspBI CTAG 2 cut(s) 263, 282
GlaI GCGC 1 cut(s) 101
GsaI CCCAGC 2 cut(s) 650, 1244
GsuI CTGGAG 2 cut(s) 773, 878
HaeIII GGCC 7 cut(s) 18, 52, 122, 379, 482, 719, 824
HapII CCGG 3 cut(s) 49, 233, 1472
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 1700
Hin1II CATG 9 cut(s) 223, 241, 464, 554, 566, 698, 803, 908, 1490
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HpaII CCGG 3 cut(s) 49, 233, 1472
HphI GGTGA 9 cut(s) 208, 371, 466, 596, 800, 905, 1200, 1215, 1512
Hpy166II GTNNAC 4 cut(s) 216, 587, 1621, 1698
Hpy188III TCNNGA 8 cut(s) 110, 161, 200, 233, 551, 1391, 1421, 1550
Hpy8I GTNNAC 4 cut(s) 216, 587, 1621, 1698
HpyAV CCTTC 6 cut(s) 329, 430, 730, 835, 1202, 1526
HpyCH4III ACNGT 2 cut(s) 655, 1707
HpyCH4V TGCA 5 cut(s) 606, 711, 816, 953, 1219
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 708, 1382
HpyF3I CTNAG 3 cut(s) 33, 71, 1558
Hsp92I GRCGYC 1 cut(s) 1700
Hsp92II CATG 9 cut(s) 223, 241, 464, 554, 566, 698, 803, 908, 1490
HspAI GCGC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 232
Ksp22I TGATCA 3 cut(s) 547, 553, 1078
LmnI GCTCC 4 cut(s) 64, 241, 344, 1000
LweI GCATC 3 cut(s) 30, 1000, 1372
MaeI CTAG 2 cut(s) 263, 282
MaeIII GTNAC 5 cut(s) 359, 788, 893, 1221, 1586
MbiI CCGCTC 1 cut(s) 244
MflI RGATCY 3 cut(s) 106, 635, 1095
MhlI GDGCHC 2 cut(s) 153, 1247
MluCI AATT 7 cut(s) 194, 484, 956, 1129, 1360, 1495, 1500
MlyI GAGTC 3 cut(s) 82, 221, 1535
MmeI TCCRAC 1 cut(s) 1073
MroI TCCGGA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 1434
MseI TTAA 2 cut(s) 270, 1499
MslI CAYNNNNRTG 2 cut(s) 909, 1332
MspA1I CMGCKG 5 cut(s) 751, 813, 856, 918, 1118
MspI CCGG 3 cut(s) 49, 233, 1472
MspR9I CCNGG 4 cut(s) 343, 1173, 1410, 1473
MvaI CCWGG 3 cut(s) 343, 1173, 1410
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 18, 708, 1382
NciI CCSGG 1 cut(s) 1473
NcoI CCATGG 1 cut(s) 219
NlaIII CATG 9 cut(s) 223, 241, 464, 554, 566, 698, 803, 908, 1490
NlaIV GGNNCC 4 cut(s) 108, 340, 637, 1246
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 5 cut(s) 359, 788, 893, 1221, 1586
NruI TCGCGA 1 cut(s) 162
NspV TTCGAA 1 cut(s) 939
PaeR7I CTCGAG 1 cut(s) 1550
PagI TCATGA 1 cut(s) 550
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 1596
PdmI GAANNNNTTC 1 cut(s) 1434
PfoI TCCNGGA 1 cut(s) 341
PleI GAGTC 3 cut(s) 81, 221, 1535
PpsI GAGTC 3 cut(s) 81, 221, 1535
Psp6I CCWGG 3 cut(s) 341, 1171, 1408
PspFI CCCAGC 2 cut(s) 646, 1240
PspGI CCWGG 3 cut(s) 341, 1171, 1408
PspN4I GGNNCC 4 cut(s) 108, 340, 637, 1246
PspPI GGNCC 2 cut(s) 51, 378
PstI CTGCAG 5 cut(s) 608, 713, 818, 955, 1221
PsuI RGATCY 3 cut(s) 106, 635, 1095
PvuII CAGCTG 5 cut(s) 751, 813, 856, 918, 1118
RruI TCGCGA 1 cut(s) 162
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 909, 1332
SaqAI TTAA 2 cut(s) 270, 1499
Sau96I GGNCC 2 cut(s) 51, 378
SchI GAGTC 3 cut(s) 82, 221, 1535
ScrFI CCNGG 4 cut(s) 343, 1173, 1410, 1473
SduI GDGCHC 2 cut(s) 153, 1247
SfaNI GCATC 3 cut(s) 30, 1000, 1372
SfcI CTRYAG 5 cut(s) 604, 709, 814, 951, 1217
Sfr274I CTCGAG 1 cut(s) 1550
SfuI TTCGAA 1 cut(s) 939
SlaI CTCGAG 1 cut(s) 1550
SmiMI CAYNNNNRTG 2 cut(s) 909, 1332
SmlI CTYRAG 1 cut(s) 1550
SmoI CTYRAG 1 cut(s) 1550
Sse9I AATT 7 cut(s) 194, 484, 956, 1129, 1360, 1495, 1500
SspI AATATT 1 cut(s) 1286
SspMI CTAG 2 cut(s) 263, 282
StyD4I CCNGG 4 cut(s) 341, 1171, 1408, 1471
StyI CCWWGG 3 cut(s) 219, 330, 477
TaaI ACNGT 2 cut(s) 655, 1707
TaqI TCGA 2 cut(s) 939, 1551
TasI AATT 7 cut(s) 194, 484, 956, 1129, 1360, 1495, 1500
TauI GCSGC 3 cut(s) 21, 522, 1128
Tru1I TTAA 2 cut(s) 270, 1499
Tru9I TTAA 2 cut(s) 270, 1499
TscAI CASTG 6 cut(s) 180, 787, 799, 892, 904, 1700
TseFI GTSAC 5 cut(s) 359, 788, 893, 1221, 1586
Tsp45I GTSAC 5 cut(s) 359, 788, 893, 1221, 1586
TspDTI ATGAA 9 cut(s) 699, 960, 1050, 1122, 1184, 1278, 1281, 1344, 1350
TspGWI ACGGA 1 cut(s) 1605
TspRI CASTG 6 cut(s) 180, 787, 799, 892, 904, 1700
XapI RAATTY 2 cut(s) 194, 956
XcmI CCANNNNNNNNNTGG 1 cut(s) 929
XhoI CTCGAG 1 cut(s) 1550
XmnI GAANNNNTTC 1 cut(s) 1434
XspI CTAG 2 cut(s) 263, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.