RLG00000014879
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002549
Physical Location & Seq
Reverse (-)
59073561 .. 59075235
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014879

Sequence Viewer

Length: 1302 bp
ATGATGATGATGATGATGAGCAGCGACCGCATCAGACTTCCAAAGGGTTTCCGATTCCAGCCCTCCGAGGAGGAGCTGCTGAGTCATTACTTGGTGAAGAAGAATCATCAGCGCAAGGATCCCGAAATCGAGGCCATCATCCCTGAGATCAATGTGTGCGAGCACGAGCCTCGCGAATTACCAGCCCTGGTGTTCACAAGGGCGAAATTTCTGCCGGCCTCTCCGAACATGGAGGAGTGGCACTTCTTCAGTCGGCGAGTTTTTAAACACAGCAAAAGCAAAAGCGAAGGCAAAGGCAAAGGCAAAAGCAAAAGCACTCAAATCAACAGGGCCACCAAGGAAGGCTCCTGGAAGAAGCAAGGCGATGACAAAAGAATCACTCGGCCCTATTCTGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCTGCCGAAGAAACAGAGGACTGACTGGGTTATCCATGAGTATTATCTCACTAAGGCCAATTCTGATGAGCAGATCGGGGACTTTGTTCTCTGCCGCTTGAAGCACAAGTCAGGCAAGTCTGATCATGATCAGCTGGATGATCCACTGTGCGATGGAGGTGAACCTAATAATGGTAGCTGTAGTATGGTCTCCAATGTTGAAAATAAAGCATCCAAAGAGCTGGGAACTGCTCTTCTGATTCCCAATGGCAATGATGAATCTGAACATGGTGGCGGTAGCTGCAGTATGGCCTTTGATGTTGAAAATCAAGCGTCCAAACAGCTGGAAAATGATCTTTCGATTCCCAATGGCAATGATAATGAAGCTGAACATGGGAGTAGCTGCCCCATCACCTCTGGTTTCGATAATGAAGCTGCAGCAGATGGTATGCTTACGGAAGCAGAAGAATACCTGGCATTCAAGGAGCTGGAAGAATTTTATGGCAATGAGCAAGATGTTAGAGGCTCGCAAACTGATCCATGTTATATTGATAAGAATGATCTTTCGATCTCTGTCGAAGGTCAACCTGCTGATAGCTGCAATTCATCTGATTCTGATATGGTTGAAGAGTTACTTGATGAGCCAGGACATCTGGCCTTACCCCTTCATCCACCTTCGTTACCTCAACGGCAGTCACCAATAAACACAAAGCTGGGCACCACCAATGCCCATAATGGTGAATCTCGTAAGAGGAAATATCCATTTGGGGATAATGACCCTTTTCTTACGAAGAAAAATCATATTGATGTAGATAGCAATTCTTCATCAAATTCTGAAAATCAAGCTGCGGATGCGATTCCAGAGCAGCACAACAAGTGTATCCAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

434

Amino Acids

48.48

Weight (kDa)

5.35

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 159 2.3e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 441, 1006
AccB1I GGYRCC 1 cut(s) 1127
AccII CGCG 1 cut(s) 174
AciI CCGC 4 cut(s) 28, 526, 705, 1259
AclWI GGATC 5 cut(s) 113, 126, 425, 566, 941
AcsI RAATTY 3 cut(s) 206, 905, 1240
AcuI CTGAAG 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 602
AgsI TTSAA 5 cut(s) 532, 632, 734, 892, 1037
AjnI CCWGG 4 cut(s) 186, 347, 882, 1054
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 625
AlwI GGATC 5 cut(s) 113, 126, 425, 566, 941
AoxI GGCC 7 cut(s) 132, 216, 330, 383, 486, 720, 1065
ApeKI GCWGC 9 cut(s) 21, 76, 711, 813, 845, 848, 1008, 1256, 1276
ApoI RAATTY 3 cut(s) 206, 905, 1240
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 330, 384
AsuHPI GGTGA 5 cut(s) 106, 602, 814, 1098, 1160
BaeGI GKGCMC 1 cut(s) 1130
BaeI ACNNNNGTAYC 1 cut(s) 1273
BamHI GGATCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 1127
BauI CACGAG 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 9 cut(s) 33, 63, 698, 800, 832, 860, 995, 1243, 1288
BccI CCATC 4 cut(s) 143, 578, 827, 848
BceAI ACGGC 1 cut(s) 1115
BcgI CGANNNNNNTGC 4 cut(s) 152, 186, 193, 227
BciT130I CCWGG 4 cut(s) 188, 349, 884, 1056
BciVI GTATCC 1 cut(s) 1301
BclI TGATCA 2 cut(s) 553, 559
BcoDI GTCTC 1 cut(s) 625
BfmI CTRYAG 3 cut(s) 610, 712, 846
BfuAI ACCTGC 2 cut(s) 441, 1006
BfuI GTATCC 1 cut(s) 1301
Bme1390I CCNGG 4 cut(s) 188, 349, 884, 1056
BmgT120I GGNCC 2 cut(s) 330, 384
BmiI GGNNCC 3 cut(s) 120, 346, 1129
BmrFI CCNGG 4 cut(s) 188, 349, 884, 1056
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 3 cut(s) 39, 650, 1252
BmuI ACTGGG 1 cut(s) 466
BsaBI GATNNNNATC 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 625
BsaJI CCNNGG 3 cut(s) 66, 186, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 461
Bse3DI GCAATG 3 cut(s) 688, 790, 922
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 4 cut(s) 188, 349, 884, 1056
BseDI CCNNGG 3 cut(s) 66, 186, 336
BseGI GGATG 5 cut(s) 138, 574, 641, 1078, 1267
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 3 cut(s) 688, 790, 922
BseMII CTCAG 2 cut(s) 71, 135
BseNI ACTGG 1 cut(s) 461
BseRI GAGGAG 3 cut(s) 83, 86, 248
BseSI GKGCMC 1 cut(s) 1130
BseXI GCAGC 9 cut(s) 33, 63, 698, 800, 832, 860, 995, 1243, 1288
BseYI CCCAGC 2 cut(s) 652, 1123
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 7 cut(s) 134, 218, 332, 385, 488, 722, 1067
BshNI GGYRCC 1 cut(s) 1127
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 524
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 524
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 7 cut(s) 134, 218, 332, 385, 488, 722, 1067
Bso31I GGTCTC 1 cut(s) 625
Bsp1286I GDGCHC 2 cut(s) 165, 1130
Bsp68I TCGCGA 1 cut(s) 174
BspACI CCGC 4 cut(s) 28, 526, 705, 1259
BspANI GGCC 7 cut(s) 134, 218, 332, 385, 488, 722, 1067
BspCNI CTCAG 2 cut(s) 72, 136
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 120, 346, 1129
BspMAI CTGCAG 2 cut(s) 716, 850
BspMI ACCTGC 2 cut(s) 441, 1006
BspPI GGATC 5 cut(s) 113, 126, 425, 566, 941
BspQI GCTCTTC 1 cut(s) 669
BspT107I GGYRCC 1 cut(s) 1127
BspTNI GGTCTC 1 cut(s) 625
BsrDI GCAATG 3 cut(s) 688, 790, 922
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 1 cut(s) 461
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 3 cut(s) 66, 186, 336
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 164
Bst2UI CCWGG 4 cut(s) 188, 349, 884, 1056
Bst4CI ACNGT 1 cut(s) 579
Bst6I CTCTTC 3 cut(s) 407, 669, 1032
BstC8I GCNNGC 3 cut(s) 161, 216, 938
BstDEI CTNAG 3 cut(s) 80, 144, 483
BstF5I GGATG 5 cut(s) 138, 574, 641, 1078, 1267
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 625
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 3 cut(s) 27, 711, 1262
BstNI CCWGG 4 cut(s) 188, 349, 884, 1056
BstSCI CCNGG 4 cut(s) 186, 347, 882, 1054
BstSFI CTRYAG 3 cut(s) 610, 712, 846
BstSLI GKGCMC 1 cut(s) 1130
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 9 cut(s) 33, 63, 698, 800, 832, 860, 995, 1243, 1288
BstX2I RGATCY 2 cut(s) 118, 417
BstXI CCANNNNNNTGG 2 cut(s) 652, 754
BstYI RGATCY 2 cut(s) 118, 417
BsuI GTATCC 1 cut(s) 1301
BsuRI GGCC 7 cut(s) 134, 218, 332, 385, 488, 722, 1067
BtgZI GCGATG 2 cut(s) 378, 597
BtsCI GGATG 5 cut(s) 138, 574, 641, 1078, 1267
BtsIMutI CAGTG 1 cut(s) 575
BtuMI TCGCGA 1 cut(s) 174
BveI ACCTGC 2 cut(s) 441, 1006
Cac8I GCNNGC 3 cut(s) 161, 216, 938
CciI TCATGA 1 cut(s) 556
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 330, 384
CseI GACGC 1 cut(s) 732
CviAII CATG 6 cut(s) 229, 467, 557, 698, 803, 951
DdeI CTNAG 3 cut(s) 80, 144, 483
DraI TTTAAA 1 cut(s) 265
Eam1104I CTCTTC 3 cut(s) 407, 669, 1032
EarI CTCTTC 3 cut(s) 407, 669, 1032
Eco130I CCWWGG 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 232
EcoRII CCWGG 4 cut(s) 186, 347, 882, 1054
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 6 cut(s) 232, 470, 560, 701, 806, 954
FalI AAGNNNNNCTT 4 cut(s) 404, 436, 1029, 1061
FaqI GGGAC 1 cut(s) 524
FatI CATG 6 cut(s) 228, 466, 556, 697, 802, 950
FbaI TGATCA 2 cut(s) 553, 559
FokI GGATG 5 cut(s) 125, 581, 628, 1065, 1274
GlaI GCGC 1 cut(s) 113
GsaI CCCAGC 2 cut(s) 656, 1127
HaeIII GGCC 7 cut(s) 134, 218, 332, 385, 488, 722, 1067
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 732
HhaI GCGC 1 cut(s) 114
Hin1II CATG 6 cut(s) 232, 470, 560, 701, 806, 954
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HincII GTYRAC 1 cut(s) 995
HindII GTYRAC 1 cut(s) 995
HpaII CCGG 1 cut(s) 215
HphI GGTGA 5 cut(s) 106, 602, 814, 1098, 1160
Hpy166II GTNNAC 3 cut(s) 195, 593, 995
Hpy188III TCNNGA 5 cut(s) 122, 173, 421, 557, 1271
Hpy8I GTNNAC 3 cut(s) 195, 593, 995
HpyAV CCTTC 6 cut(s) 281, 335, 436, 983, 1085, 1095
HpyCH4III ACNGT 1 cut(s) 579
HpyCH4V TGCA 3 cut(s) 714, 848, 1011
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 711, 1262
HpyF3I CTNAG 3 cut(s) 80, 144, 483
Hsp92II CATG 6 cut(s) 232, 470, 560, 701, 806, 954
HspAI GCGC 1 cut(s) 112
KroI GCCGGC 1 cut(s) 214
KroNI GCCGGC 1 cut(s) 216
Ksp22I TGATCA 2 cut(s) 553, 559
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 3 cut(s) 73, 350, 895
Lsp1109I GCAGC 9 cut(s) 33, 63, 698, 800, 832, 860, 995, 1243, 1288
LweI GCATC 3 cut(s) 39, 650, 1252
MaeIII GTNAC 3 cut(s) 1041, 1089, 1104
MflI RGATCY 2 cut(s) 118, 417
MhlI GDGCHC 2 cut(s) 165, 1130
MluCI AATT 7 cut(s) 176, 206, 490, 905, 1012, 1228, 1240
MlyI GAGTC 1 cut(s) 91
MroNI GCCGGC 1 cut(s) 214
MseI TTAA 2 cut(s) 264, 1300
MslI CAYNNNNRTG 2 cut(s) 1146, 1215
MspA1I CMGCKG 2 cut(s) 565, 754
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 4 cut(s) 188, 349, 884, 1056
Mva1269I GAATGC 1 cut(s) 887
MvaI CCWGG 4 cut(s) 188, 349, 884, 1056
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 27, 711, 1262
NaeI GCCGGC 1 cut(s) 216
NgoMIV GCCGGC 1 cut(s) 214
NlaIII CATG 6 cut(s) 232, 470, 560, 701, 806, 954
NlaIV GGNNCC 3 cut(s) 120, 346, 1129
NmeAIII GCCGAG 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 1104
NruI TCGCGA 1 cut(s) 174
PagI TCATGA 1 cut(s) 556
PciSI GCTCTTC 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 887
PdiI GCCGGC 1 cut(s) 216
PfeI GAWTC 9 cut(s) 54, 103, 375, 670, 689, 772, 1022, 1151, 1267
PfoI TCCNGGA 1 cut(s) 347
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Psp6I CCWGG 4 cut(s) 186, 347, 882, 1054
PspFI CCCAGC 2 cut(s) 652, 1123
PspGI CCWGG 4 cut(s) 186, 347, 882, 1054
PspN4I GGNNCC 3 cut(s) 120, 346, 1129
PspPI GGNCC 2 cut(s) 330, 384
PstI CTGCAG 2 cut(s) 716, 850
PsuI RGATCY 2 cut(s) 118, 417
PvuII CAGCTG 2 cut(s) 565, 754
RruI TCGCGA 1 cut(s) 174
RseI CAYNNNNRTG 2 cut(s) 1146, 1215
SapI GCTCTTC 1 cut(s) 669
SaqAI TTAA 2 cut(s) 264, 1300
Sau96I GGNCC 2 cut(s) 330, 384
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 4 cut(s) 188, 349, 884, 1056
SduI GDGCHC 2 cut(s) 165, 1130
SfaNI GCATC 3 cut(s) 39, 650, 1252
SfcI CTRYAG 3 cut(s) 610, 712, 846
SmiMI CAYNNNNRTG 2 cut(s) 1146, 1215
Sse9I AATT 7 cut(s) 176, 206, 490, 905, 1012, 1228, 1240
SsiI CCGC 4 cut(s) 28, 526, 705, 1259
StyD4I CCNGG 4 cut(s) 186, 347, 882, 1054
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 579
TaqI TCGA 5 cut(s) 129, 770, 834, 977, 987
TasI AATT 7 cut(s) 176, 206, 490, 905, 1012, 1228, 1240
TauI GCSGC 1 cut(s) 528
TfiI GAWTC 9 cut(s) 54, 103, 375, 670, 689, 772, 1022, 1151, 1267
Tru1I TTAA 2 cut(s) 264, 1300
Tru9I TTAA 2 cut(s) 264, 1300
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 1 cut(s) 1104
TseI GCWGC 9 cut(s) 21, 76, 711, 813, 845, 848, 1008, 1256, 1276
Tsp45I GTSAC 1 cut(s) 1104
TspDTI ATGAA 6 cut(s) 702, 807, 855, 1005, 1067, 1224
TspGWI ACGGA 1 cut(s) 881
TspRI CASTG 1 cut(s) 582
XapI RAATTY 3 cut(s) 206, 905, 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.