RchiOBHm_Chr1g0361531
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002549
Physical Location & Seq
Reverse (-)
53457352 .. 53458314
963 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58639

Sequence Viewer

Length: 753 bp
ATGATGATGAGCAGCGGCCGCATCACACTTCCTAAGGGTTTCCGATTCCGGCCCTCCGATGAGGAGCTGCTGAGTCATTACTTGAAGAAGAAGAATCAGCGCAAGGATCCCGAAGTGGAGGCCATCATCCCTGAAATCAATGTGTGCGAGCACGAGCCTCGCGACTTACCAGCCCTGGTGTTCACAAGGGCGGTATTTCTGGACAGGGAGTGGTTCACCATGGCGGACTCTCCGGACATGGAATGGTACTTCTTCAGTCCGCGAGTTTTTAAACACAGCAAAAGCAAAAGCACTCGGTCCAACAGGACCACGGAGGATGGCTACTGGAAGAAGCAAGGCAAGGACCGCAGAATCATGACTCAGGCACGTTCTGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCAAACTGATGGAGTGCAGAGAAAACAGAAGACTGACTGGGTTATTCATGAGTATTATCTCACTAAGGCCGATTCTAATGAGCAGATCGGGGACTTTGTTCTCTGCCGCTTGAAGAAAAAGTCCGACAAGTCTGATCATGATGAGCAGGAAGGTCCATTCTACGGTGGAGGTGGCTACAGTATGGCCTTCATTAATGTTGAAAATCAAGCATCCAAAGAGCTGGGAAATGTTCTTTCGATTTCTGTTGAAGGTCAACCTGATAGCTGCAATTCATCTGATTCCAATATGGTTGAAGAGGTAAGAACAAACATTTCGATTTCTGCTATGAAATTTTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

250

Amino Acids

28.93

Weight (kDa)

8.29

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 157 8.2e-33 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 162, 262
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 7 cut(s) 15, 19, 191, 224, 260, 346, 517
AclWI GGATC 3 cut(s) 101, 114, 404
AcoI YGGCCR 1 cut(s) 16
AcsI RAATTY 1 cut(s) 740
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 572
AgsI TTSAA 5 cut(s) 85, 523, 611, 659, 704
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 3 cut(s) 67, 631, 675
AluI AGCT 3 cut(s) 67, 631, 675
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 3 cut(s) 101, 114, 404
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 5 cut(s) 16, 50, 120, 477, 594
ApeKI GCWGC 3 cut(s) 12, 67, 675
ApoI RAATTY 1 cut(s) 740
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 5 cut(s) 51, 297, 306, 343, 563
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 4 cut(s) 297, 306, 343, 563
AxyI CCTNAGG 1 cut(s) 33
BamHI GGATCC 1 cut(s) 106
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 24, 54, 662
BccI CCATC 3 cut(s) 131, 311, 413
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 544
BfmI CTRYAG 1 cut(s) 586
BisI GCNGC 6 cut(s) 13, 16, 19, 68, 517, 676
BlsI GCNGC 6 cut(s) 14, 17, 20, 69, 518, 677
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 4 cut(s) 297, 306, 343, 563
BmgT120I GGNCC 5 cut(s) 51, 297, 306, 343, 563
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 176
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 2 cut(s) 30, 629
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 174, 219, 309
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse1I ACTGG 2 cut(s) 329, 452
Bse21I CCTNAGG 1 cut(s) 33
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 3 cut(s) 174, 219, 309
BseGI GGATG 3 cut(s) 126, 322, 620
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMII CTCAG 2 cut(s) 62, 374
BseNI ACTGG 2 cut(s) 329, 452
BseRI GAGGAG 1 cut(s) 77
BseX3I CGGCCG 1 cut(s) 16
BseXI GCAGC 3 cut(s) 24, 54, 662
BseYI CCCAGC 1 cut(s) 631
BsgI GTGCAG 1 cut(s) 446
Bsh1236I CGCG 2 cut(s) 162, 262
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 5 cut(s) 18, 52, 122, 479, 596
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 49, 233
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 1 cut(s) 572
BsmFI GGGAC 1 cut(s) 515
BsnI GGCC 5 cut(s) 18, 52, 122, 479, 596
Bsp1286I GDGCHC 1 cut(s) 153
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 5 cut(s) 106, 381, 396, 495, 544
Bsp19I CCATGG 1 cut(s) 219
Bsp68I TCGCGA 1 cut(s) 162
BspACI CCGC 7 cut(s) 15, 19, 191, 224, 260, 346, 517
BspANI GGCC 5 cut(s) 18, 52, 122, 479, 596
BspCNI CTCAG 2 cut(s) 63, 373
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 2 cut(s) 162, 262
BspHI TCATGA 3 cut(s) 354, 457, 547
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 3 cut(s) 101, 114, 404
BsrI ACTGG 2 cut(s) 329, 452
BssECI CCNNGG 3 cut(s) 174, 219, 309
BssMI GATC 5 cut(s) 106, 381, 396, 495, 544
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 575, 590
Bst6I CTCTTC 2 cut(s) 386, 699
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 4 cut(s) 33, 71, 360, 474
BstDSI CCRYGG 2 cut(s) 219, 309
BstF5I GGATG 3 cut(s) 126, 322, 620
BstFNI CGCG 2 cut(s) 162, 262
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 5 cut(s) 109, 384, 399, 498, 547
BstMBI GATC 5 cut(s) 106, 381, 396, 495, 544
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 18, 345
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 586
BstUI CGCG 2 cut(s) 162, 262
BstV1I GCAGC 3 cut(s) 24, 54, 662
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 2 cut(s) 106, 396
BstXI CCANNNNNNTGG 2 cut(s) 419, 631
BstYI RGATCY 2 cut(s) 106, 396
BstZI CGGCCG 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 5 cut(s) 18, 52, 122, 479, 596
BtgI CCRYGG 2 cut(s) 219, 309
BtsCI GGATG 3 cut(s) 126, 322, 620
BtuMI TCGCGA 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 149
CciI TCATGA 3 cut(s) 354, 457, 547
CciNI GCGGCCGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 5 cut(s) 51, 297, 306, 343, 563
Csp6I GTAC 1 cut(s) 247
CviAII CATG 5 cut(s) 220, 238, 355, 458, 548
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 4 cut(s) 33, 71, 360, 474
DpnI GATC 5 cut(s) 108, 383, 398, 497, 546
DpnII GATC 5 cut(s) 106, 381, 396, 495, 544
DraI TTTAAA 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 16
EagI CGGCCG 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 386, 699
EarI CTCTTC 2 cut(s) 386, 699
EciI GGCGGA 1 cut(s) 239
EclXI CGGCCG 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 4 cut(s) 297, 306, 343, 563
Eco52I CGGCCG 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 5 cut(s) 223, 241, 358, 461, 551
FaiI YATR 8 cut(s) 221, 239, 356, 459, 549, 593, 698, 737
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FaqI GGGAC 1 cut(s) 515
FatI CATG 5 cut(s) 219, 237, 354, 457, 547
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 6 cut(s) 13, 16, 19, 68, 517, 676
FokI GGATG 3 cut(s) 113, 329, 607
Fsp4HI GCNGC 6 cut(s) 13, 16, 19, 68, 517, 676
GlaI GCGC 1 cut(s) 101
GluI GCNGC 6 cut(s) 13, 16, 19, 68, 517, 676
GsaI CCCAGC 1 cut(s) 635
HaeIII GGCC 5 cut(s) 18, 52, 122, 479, 596
HapII CCGG 2 cut(s) 49, 233
HhaI GCGC 1 cut(s) 102
Hin1II CATG 5 cut(s) 223, 241, 358, 461, 551
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 665
HindII GTYRAC 1 cut(s) 665
HinfI GANTC 8 cut(s) 45, 73, 94, 227, 351, 358, 482, 689
HpaII CCGG 2 cut(s) 49, 233
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 3 cut(s) 183, 216, 665
Hpy188I TCNGA 6 cut(s) 44, 58, 373, 535, 544, 688
Hpy188III TCNNGA 8 cut(s) 110, 161, 200, 233, 355, 400, 458, 548
Hpy8I GTNNAC 3 cut(s) 183, 216, 665
HpyAV CCTTC 4 cut(s) 415, 554, 607, 653
HpyCH4III ACNGT 2 cut(s) 575, 590
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 2 cut(s) 427, 678
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 345
HpyF3I CTNAG 4 cut(s) 33, 71, 360, 474
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 5 cut(s) 223, 241, 358, 461, 551
HspAI GCGC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 5 cut(s) 106, 381, 396, 495, 544
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 3 cut(s) 24, 54, 662
LweI GCATC 2 cut(s) 30, 629
MaeII ACGT 1 cut(s) 367
MalI GATC 5 cut(s) 108, 383, 398, 497, 546
MboI GATC 5 cut(s) 106, 381, 396, 495, 544
MboII GAAGA 9 cut(s) 97, 100, 103, 244, 340, 403, 451, 535, 716
MflI RGATCY 2 cut(s) 106, 396
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 679, 740, 747
MlyI GAGTC 3 cut(s) 82, 221, 352
MmeI TCCRAC 2 cut(s) 324, 558
MnlI CCTC 8 cut(s) 55, 64, 112, 168, 307, 387, 572, 700
MroI TCCGGA 1 cut(s) 232
MseI TTAA 3 cut(s) 270, 603, 746
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 2 cut(s) 49, 233
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 2 cut(s) 162, 262
MwoI GCNNNNNNNGC 2 cut(s) 18, 345
NcoI CCATGG 1 cut(s) 219
NdeII GATC 5 cut(s) 106, 381, 396, 495, 544
NlaIII CATG 5 cut(s) 223, 241, 358, 461, 551
NlaIV GGNNCC 1 cut(s) 108
NotI GCGGCCGC 1 cut(s) 16
NruI TCGCGA 1 cut(s) 162
PagI TCATGA 3 cut(s) 354, 457, 547
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 5 cut(s) 45, 94, 351, 482, 689
PkrI GCNGC 6 cut(s) 14, 17, 20, 69, 518, 677
PleI GAGTC 3 cut(s) 81, 221, 352
PpsI GAGTC 3 cut(s) 81, 221, 352
PshBI ATTAAT 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 631
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 5 cut(s) 51, 297, 306, 343, 563
PsuI RGATCY 2 cut(s) 106, 396
RruI TCGCGA 1 cut(s) 162
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 3 cut(s) 270, 603, 746
SatI GCNGC 6 cut(s) 13, 16, 19, 68, 517, 676
Sau3AI GATC 5 cut(s) 106, 381, 396, 495, 544
Sau96I GGNCC 5 cut(s) 51, 297, 306, 343, 563
SchI GAGTC 3 cut(s) 82, 221, 352
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 153
SfaNI GCATC 2 cut(s) 30, 629
SfcI CTRYAG 1 cut(s) 586
SinI GGWCC 4 cut(s) 297, 306, 343, 563
Sse9I AATT 3 cut(s) 679, 740, 747
SsiI CCGC 7 cut(s) 15, 19, 191, 224, 260, 346, 517
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 575, 590
TaiI ACGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 647, 725
TaqII GACCGA 1 cut(s) 285
TasI AATT 3 cut(s) 679, 740, 747
TauI GCSGC 3 cut(s) 18, 21, 519
TfiI GAWTC 5 cut(s) 45, 94, 351, 482, 689
Tru1I TTAA 3 cut(s) 270, 603, 746
Tru9I TTAA 3 cut(s) 270, 603, 746
TseI GCWGC 3 cut(s) 12, 67, 675
TspDTI ATGAA 4 cut(s) 446, 589, 672, 752
TspGWI ACGGA 1 cut(s) 326
VpaK11BI GGWCC 4 cut(s) 297, 306, 343, 563
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.