(NAC) domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g17950 FvH4_7g17950 FvH4_7g17950 FvH4_7g18000 FvH4_7g18000 FvH4_7g18210 FvH4_7g18210 FvH4_7g18260 FvH4_7g18260 |
| rosa_chinensis | RchiOBHm_Chr1g0333721 RchiOBHm_Chr1g0361391 RchiOBHm_Chr1g0361441 RchiOBHm_Chr1g0361471 RchiOBHm_Chr1g0361531 |
| rosa_laevigata | RLG00000014879 RLG00000027718 RLG00000027720 RLG00000029533 |
| rosa_multiflora | Rmu_sc0002119.1_g000005 Rmu_sc0002119.1_g000006 Rmu_sc0002119.1_g000022 Rmu_sc0003693.1_g000011 Rmu_sc0006417.1_g000010 Rmu_sc0010384.1_g000005 Rmu_sc0042164.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00294940 Rroxscaffold_4G00294980 Rroxscaffold_4G00294990 |
| rosa_rugosa | Rorug01G0111500 Rorug01G0289400 Rorug01G0289500 Rorug01G0289600 Rorug01G0289600 Rorug01G0289700 Rorug01G0289900 |
| rosa_samantha | Rh1AG133600 Rh1AG300200 |
| rosa_wichuraiana | Rw1G011160 Rw1G026560 Rw1G026600 Rw1G026620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1480 |
| AccIII | TCCGGA | 2 cut(s) | 226, 1939 |
| AciI | CCGC | 7 cut(s) | 9, 185, 218, 340, 505, 561, 755 |
| AclWI | GGATC | 6 cut(s) | 95, 108, 395, 1006, 1198, 1259 |
| AcoI | YGGCCR | 1 cut(s) | 1756 |
| AcsI | RAATTY | 3 cut(s) | 188, 1196, 1717 |
| AcuI | CTGAAG | 1 cut(s) | 232 |
| AfaI | GTAC | 3 cut(s) | 242, 1740, 1825 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 112, 560, 581, 1274, 1570, 1919 |
| AhlI | ACTAGT | 2 cut(s) | 913, 1880 |
| AjnI | CCWGG | 2 cut(s) | 317, 982 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 833, 865, 958, 990 |
| Alw26I | GTCTC | 4 cut(s) | 1457, 1512, 1573, 1633 |
| AlwI | GGATC | 6 cut(s) | 95, 108, 395, 1006, 1198, 1259 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 12, 1018 |
| Ama87I | CYCGRG | 2 cut(s) | 351, 1502 |
| Aor13HI | TCCGGA | 2 cut(s) | 226, 1939 |
| AoxI | GGCC | 5 cut(s) | 114, 465, 597, 1572, 1756 |
| ApeKI | GCWGC | 6 cut(s) | 6, 12, 61, 588, 675, 950 |
| ApoI | RAATTY | 3 cut(s) | 188, 1196, 1717 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1106, 1138 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1302, 2004 |
| AspLEI | GCGC | 2 cut(s) | 96, 1843 |
| AspS9I | GGNCC | 4 cut(s) | 291, 300, 337, 551 |
| AsuC2I | CCSGG | 1 cut(s) | 723 |
| AsuHPI | GGTGA | 4 cut(s) | 202, 581, 768, 1901 |
| AvaI | CYCGRG | 2 cut(s) | 351, 1502 |
| AvaII | GGWCC | 4 cut(s) | 291, 300, 337, 551 |
| AxyI | CCTNAGG | 1 cut(s) | 27 |
| BaeGI | GKGCMC | 1 cut(s) | 358 |
| BamHI | GGATCC | 1 cut(s) | 100 |
| BanII | GRGCYC | 2 cut(s) | 153, 723 |
| BauI | CACGAG | 1 cut(s) | 146 |
| BbsI | GAAGAC | 1 cut(s) | 434 |
| BbvCI | CCTCAGC | 1 cut(s) | 1490 |
| BbvI | GCAGC | 5 cut(s) | 18, 48, 575, 662, 937 |
| BccI | CCATC | 6 cut(s) | 125, 542, 1068, 1074, 1145, 1982 |
| BceAI | ACGGC | 1 cut(s) | 1230 |
| BciT130I | CCWGG | 2 cut(s) | 319, 984 |
| BclI | TGATCA | 3 cut(s) | 532, 763, 1542 |
| BcnI | CCSGG | 1 cut(s) | 723 |
| BcoDI | GTCTC | 4 cut(s) | 1457, 1512, 1573, 1633 |
| BcuI | ACTAGT | 2 cut(s) | 913, 1880 |
| BfaI | CTAG | 8 cut(s) | 521, 576, 914, 1218, 1359, 1565, 1769, 1881 |
| BfmI | CTRYAG | 3 cut(s) | 589, 770, 951 |
| BfoI | RGCGCY | 1 cut(s) | 1844 |
| BisI | GCNGC | 8 cut(s) | 7, 10, 13, 62, 505, 589, 676, 951 |
| BlsI | GCNGC | 8 cut(s) | 8, 11, 14, 63, 506, 590, 677, 952 |
| Bme1390I | CCNGG | 3 cut(s) | 319, 723, 984 |
| Bme18I | GGWCC | 4 cut(s) | 291, 300, 337, 551 |
| BmeT110I | CYCGRG | 2 cut(s) | 351, 1502 |
| BmgT120I | GGNCC | 4 cut(s) | 291, 300, 337, 551 |
| BmiI | GGNNCC | 4 cut(s) | 102, 316, 1023, 1252 |
| BmrFI | CCNGG | 3 cut(s) | 319, 723, 984 |
| BmrI | ACTGGG | 1 cut(s) | 445 |
| BmsI | GCATC | 2 cut(s) | 629, 946 |
| BmuI | ACTGGG | 1 cut(s) | 445 |
| BoxI | GACNNNNGTC | 3 cut(s) | 1535, 1558, 1596 |
| BpiI | GAAGAC | 1 cut(s) | 434 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 299, 331 |
| BpmI | CTGGAG | 2 cut(s) | 215, 429 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1490, 1837 |
| BpuEI | CTTGAG | 2 cut(s) | 1795, 2030 |
| BpuMI | CCSGG | 1 cut(s) | 723 |
| Bsa29I | ATCGAT | 2 cut(s) | 132, 1285 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1427 |
| BsaJI | CCNNGG | 2 cut(s) | 213, 303 |
| BsaWI | WCCGGW | 2 cut(s) | 226, 1939 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 188, 218, 1478, 1508, 1921, 1951 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 112, 560, 581, 1274, 1570, 1919 |
| Bse1I | ACTGG | 4 cut(s) | 174, 412, 440, 1023 |
| Bse21I | CCTNAGG | 1 cut(s) | 27 |
| Bse3DI | GCAATG | 1 cut(s) | 799 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1427 |
| BseAI | TCCGGA | 2 cut(s) | 226, 1939 |
| BseBI | CCWGG | 2 cut(s) | 319, 984 |
| BseCI | ATCGAT | 2 cut(s) | 132, 1285 |
| BseDI | CCNNGG | 2 cut(s) | 213, 303 |
| BseGI | GGATG | 4 cut(s) | 120, 553, 1090, 1428 |
| BseJI | GATNNNNATC | 1 cut(s) | 1427 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 112, 560, 581, 1274, 1570, 1919 |
| BseMI | GCAATG | 1 cut(s) | 799 |
| BseNI | ACTGG | 4 cut(s) | 174, 412, 440, 1023 |
| BseRI | GAGGAG | 2 cut(s) | 1194, 1426 |
| BseSI | GKGCMC | 1 cut(s) | 358 |
| BseXI | GCAGC | 5 cut(s) | 18, 48, 575, 662, 937 |
| BseYI | CCCAGC | 2 cut(s) | 631, 787 |
| BsgI | GTGCAG | 1 cut(s) | 434 |
| Bsh1236I | CGCG | 1 cut(s) | 1480 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1285, 1478 |
| BshFI | GGCC | 5 cut(s) | 116, 467, 599, 1574, 1758 |
| BshVI | ATCGAT | 2 cut(s) | 132, 1285 |
| BsiEI | CGRYCG | 2 cut(s) | 1285, 1478 |
| BsiHKCI | CYCGRG | 2 cut(s) | 351, 1502 |
| BsiSI | CCGG | 4 cut(s) | 227, 723, 1646, 1940 |
| BslFI | GGGAC | 3 cut(s) | 503, 1456, 1546 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 112, 560, 581, 1274, 1570, 1919 |
| BsmAI | GTCTC | 4 cut(s) | 1457, 1512, 1573, 1633 |
| BsmBI | CGTCTC | 1 cut(s) | 1633 |
| BsmFI | GGGAC | 3 cut(s) | 503, 1456, 1546 |
| BsmI | GAATGC | 1 cut(s) | 2004 |
| BsnI | GGCC | 5 cut(s) | 116, 467, 599, 1574, 1758 |
| BsoBI | CYCGRG | 2 cut(s) | 351, 1502 |
| Bsp1286I | GDGCHC | 3 cut(s) | 153, 358, 723 |
| Bsp13I | TCCGGA | 2 cut(s) | 226, 1939 |
| Bsp19I | CCATGG | 1 cut(s) | 213 |
| Bsp68I | TCGCGA | 1 cut(s) | 1480 |
| BspACI | CCGC | 7 cut(s) | 9, 185, 218, 340, 505, 561, 755 |
| BspANI | GGCC | 5 cut(s) | 116, 467, 599, 1574, 1758 |
| BspDI | ATCGAT | 2 cut(s) | 132, 1285 |
| BspEI | TCCGGA | 2 cut(s) | 226, 1939 |
| BspFNI | CGCG | 1 cut(s) | 1480 |
| BspHI | TCATGA | 2 cut(s) | 445, 535 |
| BspLI | GGNNCC | 4 cut(s) | 102, 316, 1023, 1252 |
| BspMAI | CTGCAG | 3 cut(s) | 593, 774, 955 |
| BspPI | GGATC | 6 cut(s) | 95, 108, 395, 1006, 1198, 1259 |
| BspQI | GCTCTTC | 2 cut(s) | 51, 699 |
| BsrDI | GCAATG | 1 cut(s) | 799 |
| BsrI | ACTGG | 4 cut(s) | 174, 412, 440, 1023 |
| BssECI | CCNNGG | 2 cut(s) | 213, 303 |
| BssSI | CACGAG | 1 cut(s) | 146 |
| BssT1I | CCWWGG | 1 cut(s) | 213 |
| Bst2BI | CACGAG | 1 cut(s) | 146 |
| Bst2UI | CCWGG | 2 cut(s) | 319, 984 |
| Bst4CI | ACNGT | 1 cut(s) | 1144 |
| Bst6I | CTCTTC | 5 cut(s) | 51, 377, 699, 1123, 1787 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 12 |
| BstC8I | GCNNGC | 1 cut(s) | 143 |
| BstDSI | CCRYGG | 2 cut(s) | 213, 303 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 579 |
| BstF5I | GGATG | 4 cut(s) | 120, 553, 1090, 1428 |
| BstFNI | CGCG | 1 cut(s) | 1480 |
| BstH2I | RGCGCY | 1 cut(s) | 1844 |
| BstHHI | GCGC | 2 cut(s) | 96, 1843 |
| BstMAI | GTCTC | 4 cut(s) | 1457, 1512, 1573, 1633 |
| BstMCI | CGRYCG | 2 cut(s) | 1285, 1478 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 12, 339, 956, 1369 |
| BstNI | CCWGG | 2 cut(s) | 319, 984 |
| BstNSI | RCATGY | 3 cut(s) | 235, 1238, 1690 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 1535, 1558, 1596 |
| BstSCI | CCNGG | 3 cut(s) | 317, 721, 982 |
| BstSFI | CTRYAG | 3 cut(s) | 589, 770, 951 |
| BstSLI | GKGCMC | 1 cut(s) | 358 |
| BstUI | CGCG | 1 cut(s) | 1480 |
| BstV1I | GCAGC | 5 cut(s) | 18, 48, 575, 662, 937 |
| BstV2I | GAAGAC | 1 cut(s) | 434 |
| BstX2I | RGATCY | 3 cut(s) | 100, 387, 998 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1672 |
| BstYI | RGATCY | 3 cut(s) | 100, 387, 998 |
| Bsu15I | ATCGAT | 2 cut(s) | 132, 1285 |
| Bsu36I | CCTNAGG | 1 cut(s) | 27 |
| BsuRI | GGCC | 5 cut(s) | 116, 467, 599, 1574, 1758 |
| BsuTUI | ATCGAT | 2 cut(s) | 132, 1285 |
| BtgI | CCRYGG | 2 cut(s) | 213, 303 |
| BtsCI | GGATG | 4 cut(s) | 120, 553, 1090, 1428 |
| BtsI | GCAGTG | 3 cut(s) | 242, 924, 1168 |
| BtsIMutI | CAGTG | 5 cut(s) | 167, 242, 924, 1016, 1168 |
| BtuMI | TCGCGA | 1 cut(s) | 1480 |
| Cac8I | GCNNGC | 1 cut(s) | 143 |
| CaiI | CAGNNNCTG | 2 cut(s) | 12, 1018 |
| CciI | TCATGA | 2 cut(s) | 445, 535 |
| CfoI | GCGC | 2 cut(s) | 96, 1843 |
| Cfr13I | GGNCC | 4 cut(s) | 291, 300, 337, 551 |
| ClaI | ATCGAT | 2 cut(s) | 132, 1285 |
| Csp6I | GTAC | 3 cut(s) | 241, 1739, 1824 |
| CviQI | GTAC | 3 cut(s) | 241, 1739, 1824 |
| DraI | TTTAAA | 1 cut(s) | 265 |
| EaeI | YGGCCR | 1 cut(s) | 1756 |
| Eam1104I | CTCTTC | 5 cut(s) | 51, 377, 699, 1123, 1787 |
| EarI | CTCTTC | 5 cut(s) | 51, 377, 699, 1123, 1787 |
| EciI | GGCGGA | 3 cut(s) | 200, 233, 744 |
| Eco130I | CCWWGG | 1 cut(s) | 213 |
| Eco24I | GRGCYC | 2 cut(s) | 153, 723 |
| Eco47I | GGWCC | 4 cut(s) | 291, 300, 337, 551 |
| Eco57I | CTGAAG | 1 cut(s) | 232 |
| Eco81I | CCTNAGG | 1 cut(s) | 27 |
| Eco88I | CYCGRG | 2 cut(s) | 351, 1502 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 579 |
| EcoRI | GAATTC | 1 cut(s) | 1196 |
| EcoRII | CCWGG | 2 cut(s) | 317, 982 |
| EcoT14I | CCWWGG | 1 cut(s) | 213 |
| EcoT38I | GRGCYC | 2 cut(s) | 153, 723 |
| ErhI | CCWWGG | 1 cut(s) | 213 |
| Esp3I | CGTCTC | 1 cut(s) | 1633 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 374, 406, 696, 728 |
| FaqI | GGGAC | 3 cut(s) | 503, 1456, 1546 |
| FbaI | TGATCA | 3 cut(s) | 532, 763, 1542 |
| Fnu4HI | GCNGC | 8 cut(s) | 7, 10, 13, 62, 505, 589, 676, 951 |
| FokI | GGATG | 4 cut(s) | 107, 560, 1097, 1435 |
| FriOI | GRGCYC | 2 cut(s) | 153, 723 |
| Fsp4HI | GCNGC | 8 cut(s) | 7, 10, 13, 62, 505, 589, 676, 951 |
| FspBI | CTAG | 8 cut(s) | 521, 576, 914, 1218, 1359, 1565, 1769, 1881 |
| GlaI | GCGC | 2 cut(s) | 95, 1842 |
| GluI | GCNGC | 8 cut(s) | 7, 10, 13, 62, 505, 589, 676, 951 |
| GsaI | CCCAGC | 2 cut(s) | 635, 791 |
| GsuI | CTGGAG | 2 cut(s) | 215, 429 |
| HaeII | RGCGCY | 1 cut(s) | 1844 |
| HaeIII | GGCC | 5 cut(s) | 116, 467, 599, 1574, 1758 |
| HapII | CCGG | 4 cut(s) | 227, 723, 1646, 1940 |
| HhaI | GCGC | 2 cut(s) | 96, 1843 |
| Hin6I | GCGC | 2 cut(s) | 94, 1841 |
| HinP1I | GCGC | 2 cut(s) | 94, 1841 |
| HincII | GTYRAC | 1 cut(s) | 665 |
| HindII | GTYRAC | 1 cut(s) | 665 |
| HpaII | CCGG | 4 cut(s) | 227, 723, 1646, 1940 |
| HphI | GGTGA | 4 cut(s) | 202, 581, 768, 1901 |
| Hpy166II | GTNNAC | 4 cut(s) | 177, 210, 572, 665 |
| Hpy8I | GTNNAC | 4 cut(s) | 177, 210, 572, 665 |
| Hpy99I | CGWCG | 2 cut(s) | 56, 1618 |
| HpyAV | CCTTC | 8 cut(s) | 305, 406, 610, 653, 876, 1100, 1880, 1913 |
| HpyCH4III | ACNGT | 1 cut(s) | 1144 |
| HpyCH4IV | ACGT | 2 cut(s) | 358, 1613 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 12, 339, 956, 1369 |
| HpySE526I | ACGT | 2 cut(s) | 358, 1613 |
| HspAI | GCGC | 2 cut(s) | 94, 1841 |
| Kpn2I | TCCGGA | 2 cut(s) | 226, 1939 |
| Ksp22I | TGATCA | 3 cut(s) | 532, 763, 1542 |
| LguI | GCTCTTC | 2 cut(s) | 51, 699 |
| LmnI | GCTCC | 3 cut(s) | 320, 1250, 1499 |
| Lsp1109I | GCAGC | 5 cut(s) | 18, 48, 575, 662, 937 |
| LweI | GCATC | 2 cut(s) | 629, 946 |
| MaeI | CTAG | 8 cut(s) | 521, 576, 914, 1218, 1359, 1565, 1769, 1881 |
| MaeII | ACGT | 2 cut(s) | 358, 1613 |
| MaeIII | GTNAC | 5 cut(s) | 155, 774, 1014, 1163, 1598 |
| MfeI | CAATTG | 2 cut(s) | 848, 1603 |
| MflI | RGATCY | 3 cut(s) | 100, 387, 998 |
| MhlI | GDGCHC | 3 cut(s) | 153, 358, 723 |
| MlyI | GAGTC | 7 cut(s) | 76, 215, 728, 1109, 1427, 1452, 1514 |
| MmeI | TCCRAC | 3 cut(s) | 75, 318, 1275 |
| MroI | TCCGGA | 2 cut(s) | 226, 1939 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1302, 2004 |
| MseI | TTAA | 4 cut(s) | 264, 744, 1100, 1388 |
| MslI | CAYNNNNRTG | 3 cut(s) | 822, 1239, 1670 |
| MspA1I | CMGCKG | 2 cut(s) | 9, 631 |
| MspI | CCGG | 4 cut(s) | 227, 723, 1646, 1940 |
| MspR9I | CCNGG | 3 cut(s) | 319, 723, 984 |
| MunI | CAATTG | 2 cut(s) | 848, 1603 |
| Mva1269I | GAATGC | 1 cut(s) | 2004 |
| MvaI | CCWGG | 2 cut(s) | 319, 984 |
| MvnI | CGCG | 1 cut(s) | 1480 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 12, 339, 956, 1369 |
| NciI | CCSGG | 1 cut(s) | 723 |
| NcoI | CCATGG | 1 cut(s) | 213 |
| NlaIV | GGNNCC | 4 cut(s) | 102, 316, 1023, 1252 |
| NmeAIII | GCCGAG | 2 cut(s) | 1550, 1784 |
| NmuCI | GTSAC | 5 cut(s) | 155, 774, 1014, 1163, 1598 |
| NruI | TCGCGA | 1 cut(s) | 1480 |
| NspI | RCATGY | 3 cut(s) | 235, 1238, 1690 |
| PagI | TCATGA | 2 cut(s) | 445, 535 |
| PciSI | GCTCTTC | 2 cut(s) | 51, 699 |
| PctI | GAATGC | 1 cut(s) | 2004 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1302, 2004 |
| PfoI | TCCNGGA | 1 cut(s) | 317 |
| PkrI | GCNGC | 8 cut(s) | 8, 11, 14, 63, 506, 590, 677, 952 |
| Ple19I | CGATCG | 2 cut(s) | 1285, 1478 |
| PleI | GAGTC | 7 cut(s) | 75, 215, 728, 1109, 1427, 1452, 1513 |
| PpsI | GAGTC | 7 cut(s) | 75, 215, 728, 1109, 1427, 1452, 1513 |
| PshAI | GACNNNNGTC | 3 cut(s) | 1535, 1558, 1596 |
| Psp6I | CCWGG | 2 cut(s) | 317, 982 |
| PspFI | CCCAGC | 2 cut(s) | 631, 787 |
| PspGI | CCWGG | 2 cut(s) | 317, 982 |
| PspN4I | GGNNCC | 4 cut(s) | 102, 316, 1023, 1252 |
| PspPI | GGNCC | 4 cut(s) | 291, 300, 337, 551 |
| PstI | CTGCAG | 3 cut(s) | 593, 774, 955 |
| PstNI | CAGNNNCTG | 2 cut(s) | 12, 1018 |
| PsuI | RGATCY | 3 cut(s) | 100, 387, 998 |
| PvuI | CGATCG | 2 cut(s) | 1285, 1478 |
| PvuII | CAGCTG | 1 cut(s) | 631 |
| RruI | TCGCGA | 1 cut(s) | 1480 |
| RsaI | GTAC | 3 cut(s) | 242, 1740, 1825 |
| RsaNI | GTAC | 3 cut(s) | 241, 1739, 1824 |
| RseI | CAYNNNNRTG | 3 cut(s) | 822, 1239, 1670 |
| SapI | GCTCTTC | 2 cut(s) | 51, 699 |
| SaqAI | TTAA | 4 cut(s) | 264, 744, 1100, 1388 |
| SatI | GCNGC | 8 cut(s) | 7, 10, 13, 62, 505, 589, 676, 951 |
| Sau96I | GGNCC | 4 cut(s) | 291, 300, 337, 551 |
| SchI | GAGTC | 7 cut(s) | 76, 215, 728, 1109, 1427, 1452, 1514 |
| ScrFI | CCNGG | 3 cut(s) | 319, 723, 984 |
| SduI | GDGCHC | 3 cut(s) | 153, 358, 723 |
| SfaNI | GCATC | 2 cut(s) | 629, 946 |
| SfcI | CTRYAG | 3 cut(s) | 589, 770, 951 |
| SinI | GGWCC | 4 cut(s) | 291, 300, 337, 551 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 822, 1239, 1670 |
| SmlI | CTYRAG | 2 cut(s) | 1774, 2009 |
| SmoI | CTYRAG | 2 cut(s) | 1774, 2009 |
| SpeI | ACTAGT | 2 cut(s) | 913, 1880 |
| SsiI | CCGC | 7 cut(s) | 9, 185, 218, 340, 505, 561, 755 |
| SspMI | CTAG | 8 cut(s) | 521, 576, 914, 1218, 1359, 1565, 1769, 1881 |
| StyD4I | CCNGG | 3 cut(s) | 317, 721, 982 |
| StyI | CCWWGG | 1 cut(s) | 213 |
| TaaI | ACNGT | 1 cut(s) | 1144 |
| TaiI | ACGT | 2 cut(s) | 361, 1616 |
| TaqI | TCGA | 8 cut(s) | 111, 132, 1281, 1285, 1431, 1485, 1510, 1552 |
| TaqII | GACCGA | 1 cut(s) | 279 |
| TauI | GCSGC | 2 cut(s) | 12, 507 |
| Tru1I | TTAA | 4 cut(s) | 264, 744, 1100, 1388 |
| Tru9I | TTAA | 4 cut(s) | 264, 744, 1100, 1388 |
| TscAI | CASTG | 5 cut(s) | 174, 242, 931, 1023, 1168 |
| TseFI | GTSAC | 5 cut(s) | 155, 774, 1014, 1163, 1598 |
| TseI | GCWGC | 6 cut(s) | 6, 12, 61, 588, 675, 950 |
| Tsp45I | GTSAC | 5 cut(s) | 155, 774, 1014, 1163, 1598 |
| TspDTI | ATGAA | 9 cut(s) | 434, 672, 840, 924, 996, 1389, 1805, 1851, 1932 |
| TspGWI | ACGGA | 1 cut(s) | 320 |
| TspRI | CASTG | 5 cut(s) | 174, 242, 931, 1023, 1168 |
| VpaK11BI | GGWCC | 4 cut(s) | 291, 300, 337, 551 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 579 |
| XapI | RAATTY | 3 cut(s) | 188, 1196, 1717 |
| XbaI | TCTAGA | 1 cut(s) | 1768 |
| XceI | RCATGY | 3 cut(s) | 235, 1238, 1690 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1302, 2004 |
| XspI | CTAG | 8 cut(s) | 521, 576, 914, 1218, 1359, 1565, 1769, 1881 |