Rw1G011160
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002549
Physical Location & Seq
Reverse (-)
25277546 .. 25279663
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011160.1

Sequence Viewer

Length: 1251 bp
ATGATGATGAGCAGCGGCTGCATAACACTTCCTAAGGGTTTCCGATTCCAGCCCTCCGACGAAGAGCTGCTGAGTCATTACTTGGAGAAGAAGAATCAGCGCAAGGATCCCCAAATCGAGGCCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCCCGTGACTTACCAGCACTGGTATTCACAAGGGCGGAATTTCTGGAGAGGGAGTGGTTCACCATGGCGGACTCTCCAGACATGCAGTGGTACTTCTTCAGTCCAAGAGTTTTTAAGCACAGCAAAAGCAAAAGCACTCGGTCCAACAGGACCACGGAGGAAGGCTCCTGGAAGAAGCAAGGCAAGGACCGCAGAATCACTCGGGCACGTTCTGATAAGCAGATTGGGGGGAAGAGGATCTTGACCTTCTACCAAACTGGAGTGCAGAAAAAACAGAAGACTGACTGGATTATTCATGAGTATTATCTCACTAAGGCCGATTCTGATGAGCAGATCGGGGACTTTGTTCTCTGCCGCTTGAAGAAAAAGCTAGACAAGTCTGATCATGATAAGCAGGATGCTCCATTCTCAGGTGGAGGTGAACCTAGTAGAGGTAGCTGCAGTATGGCCTTCAATGTTGAAAATCAAGCATCTAAACAGCTGGGAAATGTTCTTTCAATTTCTGTTGAAGGTCAACCTGATAGCTGCAATTCATCTGATTCCGATATGGTTGAAGAGCTACTTGATGAGCCCGGAAATCTGGACTCACTCTTTAATCAACCTCCGCCACCTGATCAACTGCAGTCACCAATAAAGCTGGGCAATGTTTCACAAACCACCAATGTCCATATTGATGATTGTCGTAAGAGGAAATATCAATTTGGGGATAATGACCATTCTCCTACTAAAAAGAATCATATTTCAACCAATGATGTTGATGACCTAGTTAGCAACACTGCATCTAATTCTGAAAATCATGCTGCAGATGCGATTCCAAAGGAGTATTCTCAACCAGGAGAAAATCTGGGATCTGATTCATTTCAGTCACTGGAACCACTATCAATAAACAGAGAACTGAGAGATTGTTCCCATCACAATAATTTTATTAGATGGGATGATTTGCCACCTTTAATAGAAGGTTTTGACTCTTCTTTCGCAAAGTTCTCAGATACAGTTATTGATGGTGGTAGCAGTGACAGAAACACCAAAGTCGTCTATGGATCGGTAAACGATTATTCTACATTAGCCATTGGAGCAACACTCCAGTATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

416

Amino Acids

47.02

Weight (kDa)

5.47

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 154 1.2e-31 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 15, 191, 224, 346, 511, 761
AclWI GGATC 5 cut(s) 101, 114, 401, 1012, 1204
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 3 cut(s) 118, 566, 587
AgsI TTSAA 7 cut(s) 517, 610, 617, 654, 665, 710, 900
AjnI CCWGG 2 cut(s) 323, 988
AjuI GAANNNNNNNTTGG 2 cut(s) 964, 996
AluBI AGCT 8 cut(s) 67, 526, 594, 637, 681, 715, 793, 1248
AluI AGCT 8 cut(s) 67, 526, 594, 637, 681, 715, 793, 1248
AlwI GGATC 5 cut(s) 101, 114, 401, 1012, 1204
AlwNI CAGNNNCTG 2 cut(s) 18, 1024
Ama87I CYCGRG 1 cut(s) 357
AoxI GGCC 3 cut(s) 120, 471, 603
ApeKI GCWGC 6 cut(s) 12, 18, 67, 594, 681, 956
ApoI RAATTY 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 1112, 1144
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 3 cut(s) 297, 306, 343
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 3 cut(s) 208, 587, 774
AvaI CYCGRG 1 cut(s) 357
AvaII GGWCC 3 cut(s) 297, 306, 343
AxyI CCTNAGG 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 364
BamHI GGATCC 1 cut(s) 106
BanII GRGCYC 2 cut(s) 159, 729
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 440
BbvI GCAGC 6 cut(s) 5, 24, 54, 581, 668, 943
BccI CCATC 4 cut(s) 131, 1074, 1080, 1151
BciT130I CCWGG 2 cut(s) 325, 990
BclI TGATCA 2 cut(s) 538, 769
BcnI CCSGG 1 cut(s) 729
BfaI CTAG 3 cut(s) 527, 582, 920
BfmI CTRYAG 3 cut(s) 595, 776, 957
BisI GCNGC 8 cut(s) 13, 16, 19, 68, 511, 595, 682, 957
BlsI GCNGC 8 cut(s) 14, 17, 20, 69, 512, 596, 683, 958
Bme1390I CCNGG 3 cut(s) 325, 729, 990
Bme18I GGWCC 3 cut(s) 297, 306, 343
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 3 cut(s) 297, 306, 343
BmiI GGNNCC 3 cut(s) 108, 322, 1029
BmrFI CCNGG 3 cut(s) 325, 729, 990
BmsI GCATC 4 cut(s) 544, 635, 944, 952
BpiI GAAGAC 1 cut(s) 440
BplI GAGNNNNNCTC 3 cut(s) 305, 337, 1221
BpmI CTGGAG 4 cut(s) 216, 221, 435, 1223
BpuMI CCSGG 1 cut(s) 729
Bsa29I ATCGAT 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 219, 309
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 566, 587
Bse1I ACTGG 5 cut(s) 180, 418, 446, 1029, 1240
Bse21I CCTNAGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 805
BseBI CCWGG 2 cut(s) 325, 990
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 219, 309
BseGI GGATG 3 cut(s) 126, 559, 1096
BseLI CCNNNNNNNGG 3 cut(s) 118, 566, 587
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 4 cut(s) 62, 579, 1043, 1155
BseNI ACTGG 5 cut(s) 180, 418, 446, 1029, 1240
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 6 cut(s) 5, 24, 54, 581, 668, 943
BseYI CCCAGC 2 cut(s) 637, 793
BsgI GTGCAG 1 cut(s) 440
BshFI GGCC 3 cut(s) 122, 473, 605
BshVI ATCGAT 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 1 cut(s) 729
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 3 cut(s) 118, 566, 587
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 3 cut(s) 122, 473, 605
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 3 cut(s) 159, 364, 729
Bsp143I GATC 7 cut(s) 106, 393, 489, 538, 769, 1004, 1196
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 6 cut(s) 15, 191, 224, 346, 511, 761
BspANI GGCC 3 cut(s) 122, 473, 605
BspCNI CTCAG 4 cut(s) 63, 578, 1044, 1154
BspDI ATCGAT 1 cut(s) 138
BspHI TCATGA 2 cut(s) 451, 541
BspLI GGNNCC 3 cut(s) 108, 322, 1029
BspMAI CTGCAG 3 cut(s) 599, 780, 961
BspPI GGATC 5 cut(s) 101, 114, 401, 1012, 1204
BspQI GCTCTTC 2 cut(s) 57, 705
BsrDI GCAATG 1 cut(s) 805
BsrI ACTGG 5 cut(s) 180, 418, 446, 1029, 1240
BssECI CCNNGG 2 cut(s) 219, 309
BssMI GATC 7 cut(s) 106, 393, 489, 538, 769, 1004, 1196
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 325, 990
Bst4CI ACNGT 1 cut(s) 1150
Bst6I CTCTTC 4 cut(s) 57, 383, 705, 1129
BstAPI GCANNNNNTGC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 6 cut(s) 33, 71, 468, 565, 1052, 1141
BstDSI CCRYGG 2 cut(s) 219, 309
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 3 cut(s) 126, 559, 1096
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 7 cut(s) 109, 396, 492, 541, 772, 1007, 1199
BstMBI GATC 7 cut(s) 106, 393, 489, 538, 769, 1004, 1196
BstMWI GCNNNNNNNGC 4 cut(s) 18, 345, 962, 1229
BstNI CCWGG 2 cut(s) 325, 990
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 3 cut(s) 323, 727, 988
BstSFI CTRYAG 3 cut(s) 595, 776, 957
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 6 cut(s) 5, 24, 54, 581, 668, 943
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 3 cut(s) 106, 393, 1004
BstYI RGATCY 3 cut(s) 106, 393, 1004
Bsu15I ATCGAT 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 3 cut(s) 122, 473, 605
BsuTUI ATCGAT 1 cut(s) 138
BtgI CCRYGG 2 cut(s) 219, 309
BtsCI GGATG 3 cut(s) 126, 559, 1096
BtsI GCAGTG 3 cut(s) 248, 930, 1174
BtsIMutI CAGTG 5 cut(s) 173, 248, 930, 1022, 1174
Cac8I GCNNGC 1 cut(s) 149
CaiI CAGNNNCTG 2 cut(s) 18, 1024
CciI TCATGA 2 cut(s) 451, 541
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 3 cut(s) 297, 306, 343
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 1 cut(s) 247
CviAII CATG 5 cut(s) 220, 238, 452, 542, 953
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 6 cut(s) 33, 71, 468, 565, 1052, 1141
DpnI GATC 7 cut(s) 108, 395, 491, 540, 771, 1006, 1198
DpnII GATC 7 cut(s) 106, 393, 489, 538, 769, 1004, 1196
Eam1104I CTCTTC 4 cut(s) 57, 383, 705, 1129
EarI CTCTTC 4 cut(s) 57, 383, 705, 1129
EciI GGCGGA 3 cut(s) 206, 239, 750
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 2 cut(s) 159, 729
Eco47I GGWCC 3 cut(s) 297, 306, 343
Eco57I CTGAAG 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 357
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoRII CCWGG 2 cut(s) 323, 988
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 2 cut(s) 159, 729
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 5 cut(s) 223, 241, 455, 545, 956
FalI AAGNNNNNCTT 4 cut(s) 380, 412, 702, 734
FaqI GGGAC 1 cut(s) 509
FatI CATG 5 cut(s) 219, 237, 451, 541, 952
FbaI TGATCA 2 cut(s) 538, 769
Fnu4HI GCNGC 8 cut(s) 13, 16, 19, 68, 511, 595, 682, 957
FokI GGATG 3 cut(s) 113, 566, 1103
FriOI GRGCYC 2 cut(s) 159, 729
Fsp4HI GCNGC 8 cut(s) 13, 16, 19, 68, 511, 595, 682, 957
FspBI CTAG 3 cut(s) 527, 582, 920
GlaI GCGC 1 cut(s) 101
GluI GCNGC 8 cut(s) 13, 16, 19, 68, 511, 595, 682, 957
GsaI CCCAGC 2 cut(s) 641, 797
GsuI CTGGAG 4 cut(s) 216, 221, 435, 1223
HaeIII GGCC 3 cut(s) 122, 473, 605
HapII CCGG 1 cut(s) 729
HhaI GCGC 1 cut(s) 102
Hin1II CATG 5 cut(s) 223, 241, 455, 545, 956
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 671
HindII GTYRAC 1 cut(s) 671
HpaII CCGG 1 cut(s) 729
HphI GGTGA 3 cut(s) 208, 587, 774
Hpy166II GTNNAC 4 cut(s) 216, 578, 671, 1204
Hpy188III TCNNGA 6 cut(s) 200, 233, 397, 452, 542, 737
Hpy8I GTNNAC 4 cut(s) 216, 578, 671, 1204
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 5 cut(s) 311, 412, 616, 659, 1106
HpyCH4III ACNGT 1 cut(s) 1150
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 9 cut(s) 21, 147, 241, 421, 597, 684, 778, 935, 959
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 345, 962, 1229
HpyF3I CTNAG 6 cut(s) 33, 71, 468, 565, 1052, 1141
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 5 cut(s) 223, 241, 455, 545, 956
HspAI GCGC 1 cut(s) 100
Ksp22I TGATCA 2 cut(s) 538, 769
Kzo9I GATC 7 cut(s) 106, 393, 489, 538, 769, 1004, 1196
LguI GCTCTTC 2 cut(s) 57, 705
LmnI GCTCC 3 cut(s) 326, 562, 1229
Lsp1109I GCAGC 6 cut(s) 5, 24, 54, 581, 668, 943
LweI GCATC 4 cut(s) 544, 635, 944, 952
MaeI CTAG 3 cut(s) 527, 582, 920
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 4 cut(s) 161, 780, 1020, 1169
MalI GATC 7 cut(s) 108, 395, 491, 540, 771, 1006, 1198
MboI GATC 7 cut(s) 106, 393, 489, 538, 769, 1004, 1196
MflI RGATCY 3 cut(s) 106, 393, 1004
MhlI GDGCHC 3 cut(s) 159, 364, 729
MluCI AATT 6 cut(s) 194, 654, 685, 854, 940, 1075
MlyI GAGTC 4 cut(s) 82, 221, 734, 1115
MmeI TCCRAC 2 cut(s) 81, 324
MnlI CCTC 9 cut(s) 64, 112, 198, 307, 384, 566, 581, 768, 837
MseI TTAA 3 cut(s) 270, 750, 1106
MslI CAYNNNNRTG 1 cut(s) 828
MspA1I CMGCKG 2 cut(s) 15, 637
MspI CCGG 1 cut(s) 729
MspR9I CCNGG 3 cut(s) 325, 729, 990
MvaI CCWGG 2 cut(s) 325, 990
MwoI GCNNNNNNNGC 4 cut(s) 18, 345, 962, 1229
NciI CCSGG 1 cut(s) 729
NcoI CCATGG 1 cut(s) 219
NdeII GATC 7 cut(s) 106, 393, 489, 538, 769, 1004, 1196
NlaIII CATG 5 cut(s) 223, 241, 455, 545, 956
NlaIV GGNNCC 3 cut(s) 108, 322, 1029
NmuCI GTSAC 4 cut(s) 161, 780, 1020, 1169
NspI RCATGY 1 cut(s) 241
PagI TCATGA 2 cut(s) 451, 541
PciSI GCTCTTC 2 cut(s) 57, 705
PfeI GAWTC 8 cut(s) 45, 94, 351, 476, 695, 889, 967, 1010
PfoI TCCNGGA 1 cut(s) 323
PkrI GCNGC 8 cut(s) 14, 17, 20, 69, 512, 596, 683, 958
PleI GAGTC 4 cut(s) 81, 221, 734, 1115
PpsI GAGTC 4 cut(s) 81, 221, 734, 1115
Psp6I CCWGG 2 cut(s) 323, 988
PspFI CCCAGC 2 cut(s) 637, 793
PspGI CCWGG 2 cut(s) 323, 988
PspN4I GGNNCC 3 cut(s) 108, 322, 1029
PspPI GGNCC 3 cut(s) 297, 306, 343
PstI CTGCAG 3 cut(s) 599, 780, 961
PstNI CAGNNNCTG 2 cut(s) 18, 1024
PsuI RGATCY 3 cut(s) 106, 393, 1004
PvuII CAGCTG 1 cut(s) 637
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 828
SapI GCTCTTC 2 cut(s) 57, 705
SaqAI TTAA 3 cut(s) 270, 750, 1106
SatI GCNGC 8 cut(s) 13, 16, 19, 68, 511, 595, 682, 957
Sau3AI GATC 7 cut(s) 106, 393, 489, 538, 769, 1004, 1196
Sau96I GGNCC 3 cut(s) 297, 306, 343
SchI GAGTC 4 cut(s) 82, 221, 734, 1115
ScrFI CCNGG 3 cut(s) 325, 729, 990
SduI GDGCHC 3 cut(s) 159, 364, 729
SfaNI GCATC 4 cut(s) 544, 635, 944, 952
SfcI CTRYAG 3 cut(s) 595, 776, 957
SinI GGWCC 3 cut(s) 297, 306, 343
SmiMI CAYNNNNRTG 1 cut(s) 828
Sse9I AATT 6 cut(s) 194, 654, 685, 854, 940, 1075
SsiI CCGC 6 cut(s) 15, 191, 224, 346, 511, 761
SspMI CTAG 3 cut(s) 527, 582, 920
StyD4I CCNGG 3 cut(s) 323, 727, 988
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 1150
TaiI ACGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 117, 138
TaqII GACCGA 1 cut(s) 285
TasI AATT 6 cut(s) 194, 654, 685, 854, 940, 1075
TauI GCSGC 2 cut(s) 18, 513
TfiI GAWTC 8 cut(s) 45, 94, 351, 476, 695, 889, 967, 1010
Tru1I TTAA 3 cut(s) 270, 750, 1106
Tru9I TTAA 3 cut(s) 270, 750, 1106
TscAI CASTG 5 cut(s) 180, 248, 937, 1029, 1174
TseFI GTSAC 4 cut(s) 161, 780, 1020, 1169
TseI GCWGC 6 cut(s) 12, 18, 67, 594, 681, 956
Tsp45I GTSAC 4 cut(s) 161, 780, 1020, 1169
TspDTI ATGAA 3 cut(s) 440, 678, 1002
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 5 cut(s) 180, 248, 937, 1029, 1174
VpaK11BI GGWCC 3 cut(s) 297, 306, 343
XagI CCTNNNNNAGG 1 cut(s) 585
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XspI CTAG 3 cut(s) 527, 582, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.