RLG00000027720
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002549
Physical Location & Seq
Forward (+)
14316337 .. 14317956
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027720

Sequence Viewer

Length: 1395 bp
ATGGCCGACTCTCCGGACATGGAGTGGTACTTCTTCAGTCCGCTAGTTTTTAAATACAGCACAAGCAAAAGCGAAGGCAAAGGCAAAAGCAAAAGCACTCAAATCAACAGGGCTACCAAGGAAGGCTCCTGGAAGAAGCAAGGCGGTGACAAAAGAATCACTCGGCCCTATTCTGATAAGCAGATCGGGGGGAAGAGGATCATGACCTTCTACCTGCCGAAGAAACAGAAGACTGACTGGGTTATCCATGAGTATTATCTCACCAAGGCCAATGAGCAGGTCGGGGACTTTGTTCTCTGCCGCTTGAAGAACAAGTCAGGCAAGTTTGATCATGATCAGCAGGATGATCCACTGGGCGATGGAGGTGAACCTAATAGTGGTAGCTGTAGTATGGTCTCCAATGTTGAAGATCAAGGATCCAAAGAGCTGGGAACTGTTCTTCCGATTTCCAATAGCAATGATGATGAAGCTGAACATGGTGGCGGCGGTAGCTGCAATATGGCCTTCAGTGTTGAAAATCAAGCATCCAAACAGCTGGAAAATGTTCTTCCGATTCCCAATGGCAATGATGGTGAGACTGAACATGGTGGTGGCAGCTGCCACATCGCCTCCGGTTTCGAAAATGAAGCTGCAGAATTTGGTATGCTTACAGAAGAAGAAATAAACCTGGCATTCGAGGTGCTGAAAGATGCTGTTAGGGAATATCATGCTAATGAGCAAGAAGTTAGAGGCTCACAAACTGATCCTTGTTATATTGATCAGAATGATCTTTGGATCTCTGTTGAAGGTCAACCAGCTGATAGCAGCAATTCATCTGATTCCAACATGGTTGAAAAGCCACTTGATGAGCCAGGAAATCTGGCCTTACCCCTTCATCCACCTCCATCACCTCAACTGCAGTCACCAATATACACAAAGCTGGGCACCACCAATGTCCAAAATGATGAATCTCGTAAGAGGAAATATTCATTTGGGGATAATGACCCTTTTCTTACGAAGAAGAATCATATTGATGAAGTAGCTAGCAACTCTTCATCTAATTCTGAAAATCAAGCTGCGGATGCGATTCCAGAGGGATATTCTCAACCAGGAGAAAATCGGGAATCTGATTCATTTCAGTCGCAGGAACTACTATCAATAAATAGAGAACCGAGAGCTTTTCCCTATGACAATAATAGTTTTATTGAATGGGATGATTTGCCACCTATAACAGATGGTTTTGAGTCTTCTCTCGAAAAGTTCTCAGGTAGATTTATTGATGGAGGTAGCAATGACGGAATCACCGAAGTCAACTATATGTCGGTAAACGATTATTCTACATTAGCCATAGGAGAAACACCCAATGTAGCTAATCAACCTTTATTTATAGGAGAATATCAGTGGAGGCCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

465

Amino Acids

51.39

Weight (kDa)

4.56

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 86 1.1e-12 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 222, 268
AccB1I GGYRCC 1 cut(s) 923
AccIII TCCGGA 1 cut(s) 13
AciI CCGC 6 cut(s) 41, 144, 301, 483, 486, 1058
AclWI GGATC 6 cut(s) 206, 341, 411, 424, 737, 782
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 2 cut(s) 19, 490
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 6 cut(s) 307, 407, 515, 785, 833, 1187
AjnI CCWGG 4 cut(s) 128, 666, 850, 1087
AloI GAACNNNNNNTCC 2 cut(s) 424, 456
Alw26I GTCTC 2 cut(s) 400, 569
AlwI GGATC 6 cut(s) 206, 341, 411, 424, 737, 782
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 6 cut(s) 3, 164, 267, 501, 861, 1385
ApeKI GCWGC 6 cut(s) 492, 594, 597, 629, 804, 1055
ApoI RAATTY 1 cut(s) 635
Asp700I GAANNNNTTC 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 7 cut(s) 158, 253, 377, 584, 879, 894, 1273
AsuII TTCGAA 1 cut(s) 618
AsuNHI GCTAGC 1 cut(s) 1022
BaeGI GKGCMC 1 cut(s) 926
BamHI GGATCC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 923
BbsI GAAGAC 2 cut(s) 236, 1218
BbvI GCAGC 6 cut(s) 479, 584, 606, 616, 816, 1042
BccI CCATC 5 cut(s) 353, 563, 892, 1208, 1253
BciT130I CCWGG 4 cut(s) 130, 668, 852, 1089
BclI TGATCA 3 cut(s) 328, 334, 757
BcoDI GTCTC 2 cut(s) 400, 569
BfaI CTAG 2 cut(s) 44, 1023
BfmI CTRYAG 3 cut(s) 385, 630, 896
BfuAI ACCTGC 2 cut(s) 222, 268
BisI GCNGC 8 cut(s) 301, 484, 493, 595, 598, 630, 805, 1056
BlsI GCNGC 8 cut(s) 302, 485, 494, 596, 599, 631, 806, 1057
Bme1390I CCNGG 4 cut(s) 130, 668, 852, 1089
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 3 cut(s) 127, 418, 925
BmrFI CCNGG 4 cut(s) 130, 668, 852, 1089
BmrI ACTGGG 2 cut(s) 247, 362
BmsI GCATC 3 cut(s) 533, 679, 1051
BmtI GCTAGC 1 cut(s) 1026
BmuI ACTGGG 2 cut(s) 247, 362
BpiI GAAGAC 2 cut(s) 236, 1218
Bpu14I TTCGAA 1 cut(s) 618
BsaBI GATNNNNATC 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 117, 264
BsaWI WCCGGW 2 cut(s) 13, 611
BsaXI ACNNNNNCTCC 2 cut(s) 593, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 242, 357
Bse3DI GCAATG 3 cut(s) 463, 571, 1276
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 4 cut(s) 130, 668, 852, 1089
BseDI CCNNGG 2 cut(s) 117, 264
BseGI GGATG 5 cut(s) 349, 524, 874, 1066, 1198
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMI GCAATG 3 cut(s) 463, 571, 1276
BseMII CTCAG 1 cut(s) 1257
BseNI ACTGG 2 cut(s) 242, 357
BseSI GKGCMC 1 cut(s) 926
BseXI GCAGC 6 cut(s) 479, 584, 606, 616, 816, 1042
BseYI CCCAGC 2 cut(s) 427, 919
BshFI GGCC 6 cut(s) 5, 166, 269, 503, 863, 1387
BshNI GGYRCC 1 cut(s) 923
BsiSI CCGG 2 cut(s) 14, 612
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 2 cut(s) 400, 569
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 671
BsnI GGCC 6 cut(s) 5, 166, 269, 503, 863, 1387
Bso31I GGTCTC 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 926
Bsp13I TCCGGA 1 cut(s) 13
BspACI CCGC 6 cut(s) 41, 144, 301, 483, 486, 1058
BspANI GGCC 6 cut(s) 5, 166, 269, 503, 863, 1387
BspCNI CTCAG 1 cut(s) 1256
BspEI TCCGGA 1 cut(s) 13
BspHI TCATGA 2 cut(s) 201, 331
BspLI GGNNCC 3 cut(s) 127, 418, 925
BspMAI CTGCAG 2 cut(s) 634, 900
BspMI ACCTGC 2 cut(s) 222, 268
BspOI GCTAGC 1 cut(s) 1026
BspPI GGATC 6 cut(s) 206, 341, 411, 424, 737, 782
BspT104I TTCGAA 1 cut(s) 618
BspT107I GGYRCC 1 cut(s) 923
BspTNI GGTCTC 1 cut(s) 400
BsrDI GCAATG 3 cut(s) 463, 571, 1276
BsrI ACTGG 2 cut(s) 242, 357
BssECI CCNNGG 2 cut(s) 117, 264
BssT1I CCWWGG 2 cut(s) 117, 264
Bst2UI CCWGG 4 cut(s) 130, 668, 852, 1089
Bst4CI ACNGT 2 cut(s) 436, 1392
Bst6I CTCTTC 2 cut(s) 188, 1036
BstBI TTCGAA 1 cut(s) 618
BstC8I GCNNGC 1 cut(s) 1024
BstDEI CTNAG 1 cut(s) 1243
BstF5I GGATG 5 cut(s) 349, 524, 874, 1066, 1198
BstMAI GTCTC 2 cut(s) 400, 569
BstMWI GCNNNNNNNGC 3 cut(s) 489, 492, 1061
BstNI CCWGG 4 cut(s) 130, 668, 852, 1089
BstSCI CCNGG 4 cut(s) 128, 666, 850, 1087
BstSFI CTRYAG 3 cut(s) 385, 630, 896
BstSLI GKGCMC 1 cut(s) 926
BstV1I GCAGC 6 cut(s) 479, 584, 606, 616, 816, 1042
BstV2I GAAGAC 2 cut(s) 236, 1218
BstX2I RGATCY 2 cut(s) 416, 774
BstXI CCANNNNNNTGG 2 cut(s) 427, 535
BstYI RGATCY 2 cut(s) 416, 774
BsuRI GGCC 6 cut(s) 5, 166, 269, 503, 863, 1387
BtgZI GCGATG 2 cut(s) 372, 589
BtsCI GGATG 5 cut(s) 349, 524, 874, 1066, 1198
BtsIMutI CAGTG 3 cut(s) 350, 514, 1385
BveI ACCTGC 2 cut(s) 222, 268
Cac8I GCNNGC 1 cut(s) 1024
CciI TCATGA 2 cut(s) 201, 331
Cfr13I GGNCC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 28
CviAII CATG 8 cut(s) 19, 202, 248, 332, 476, 584, 707, 826
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 1243
DraI TTTAAA 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 188, 1036
EarI CTCTTC 2 cut(s) 188, 1036
Eco130I CCWWGG 2 cut(s) 117, 264
Eco31I GGTCTC 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 19, 490
EcoRII CCWGG 4 cut(s) 128, 666, 850, 1087
EcoT14I CCWWGG 2 cut(s) 117, 264
ErhI CCWWGG 2 cut(s) 117, 264
FaeI CATG 8 cut(s) 22, 205, 251, 335, 479, 587, 710, 829
FaqI GGGAC 1 cut(s) 299
FatI CATG 8 cut(s) 18, 201, 247, 331, 475, 583, 706, 825
FbaI TGATCA 3 cut(s) 328, 334, 757
Fnu4HI GCNGC 8 cut(s) 301, 484, 493, 595, 598, 630, 805, 1056
FokI GGATG 5 cut(s) 356, 511, 861, 1073, 1205
Fsp4HI GCNGC 8 cut(s) 301, 484, 493, 595, 598, 630, 805, 1056
FspBI CTAG 2 cut(s) 44, 1023
GluI GCNGC 8 cut(s) 301, 484, 493, 595, 598, 630, 805, 1056
GsaI CCCAGC 2 cut(s) 431, 923
HaeIII GGCC 6 cut(s) 5, 166, 269, 503, 863, 1387
HapII CCGG 2 cut(s) 14, 612
Hin1II CATG 8 cut(s) 22, 205, 251, 335, 479, 587, 710, 829
HincII GTYRAC 2 cut(s) 791, 1291
HindII GTYRAC 2 cut(s) 791, 1291
HpaII CCGG 2 cut(s) 14, 612
HphI GGTGA 7 cut(s) 158, 253, 377, 584, 879, 894, 1273
Hpy166II GTNNAC 4 cut(s) 368, 791, 1291, 1306
Hpy188I TCNGA 7 cut(s) 175, 444, 552, 762, 817, 1045, 1108
Hpy188III TCNNGA 6 cut(s) 14, 202, 332, 1070, 1100, 1232
Hpy8I GTNNAC 4 cut(s) 368, 791, 1291, 1306
HpyAV CCTTC 6 cut(s) 68, 116, 217, 514, 779, 881
HpyCH4III ACNGT 2 cut(s) 436, 1392
HpyCH4V TGCA 3 cut(s) 495, 632, 898
HpyF10VI GCNNNNNNNGC 3 cut(s) 489, 492, 1061
HpyF3I CTNAG 1 cut(s) 1243
Hsp92II CATG 8 cut(s) 22, 205, 251, 335, 479, 587, 710, 829
Kpn2I TCCGGA 1 cut(s) 13
Ksp22I TGATCA 3 cut(s) 328, 334, 757
LmnI GCTCC 1 cut(s) 131
Lsp1109I GCAGC 6 cut(s) 479, 584, 606, 616, 816, 1042
LweI GCATC 3 cut(s) 533, 679, 1051
MaeI CTAG 2 cut(s) 44, 1023
MaeIII GTNAC 2 cut(s) 146, 900
MflI RGATCY 2 cut(s) 416, 774
MhlI GDGCHC 1 cut(s) 926
MluCI AATT 3 cut(s) 635, 808, 1039
MlyI GAGTC 2 cut(s) 2, 1232
MmeI TCCRAC 1 cut(s) 846
MroI TCCGGA 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 3 cut(s) 588, 711, 1011
MspA1I CMGCKG 3 cut(s) 535, 597, 797
MspI CCGG 2 cut(s) 14, 612
MspR9I CCNGG 4 cut(s) 130, 668, 852, 1089
Mva1269I GAATGC 1 cut(s) 671
MvaI CCWGG 4 cut(s) 130, 668, 852, 1089
MwoI GCNNNNNNNGC 3 cut(s) 489, 492, 1061
NheI GCTAGC 1 cut(s) 1022
NlaIII CATG 8 cut(s) 22, 205, 251, 335, 479, 587, 710, 829
NlaIV GGNNCC 3 cut(s) 127, 418, 925
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 146, 900
NspV TTCGAA 1 cut(s) 618
PagI TCATGA 2 cut(s) 201, 331
PcsI WCGNNNNNNNCGW 1 cut(s) 1281
PctI GAATGC 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 9 cut(s) 156, 553, 818, 947, 1003, 1066, 1103, 1109, 1278
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 8 cut(s) 302, 485, 494, 596, 599, 631, 806, 1057
PleI GAGTC 2 cut(s) 2, 1231
PpsI GAGTC 2 cut(s) 2, 1231
Psp6I CCWGG 4 cut(s) 128, 666, 850, 1087
PspFI CCCAGC 2 cut(s) 427, 919
PspGI CCWGG 4 cut(s) 128, 666, 850, 1087
PspN4I GGNNCC 3 cut(s) 127, 418, 925
PspPI GGNCC 1 cut(s) 165
PstI CTGCAG 2 cut(s) 634, 900
PsuI RGATCY 2 cut(s) 416, 774
PvuII CAGCTG 3 cut(s) 535, 597, 797
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 3 cut(s) 588, 711, 1011
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 8 cut(s) 301, 484, 493, 595, 598, 630, 805, 1056
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 2 cut(s) 2, 1232
ScrFI CCNGG 4 cut(s) 130, 668, 852, 1089
SduI GDGCHC 1 cut(s) 926
SfaNI GCATC 3 cut(s) 533, 679, 1051
SfcI CTRYAG 3 cut(s) 385, 630, 896
SfuI TTCGAA 1 cut(s) 618
SmiMI CAYNNNNRTG 3 cut(s) 588, 711, 1011
Sse9I AATT 3 cut(s) 635, 808, 1039
SsiI CCGC 6 cut(s) 41, 144, 301, 483, 486, 1058
SspI AATATT 1 cut(s) 965
SspMI CTAG 2 cut(s) 44, 1023
StyD4I CCNGG 4 cut(s) 128, 666, 850, 1087
StyI CCWWGG 2 cut(s) 117, 264
TaaI ACNGT 2 cut(s) 436, 1392
TaqI TCGA 3 cut(s) 618, 675, 1233
TasI AATT 3 cut(s) 635, 808, 1039
TauI GCSGC 2 cut(s) 303, 486
TfiI GAWTC 9 cut(s) 156, 553, 818, 947, 1003, 1066, 1103, 1109, 1278
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 3 cut(s) 357, 514, 1385
TseFI GTSAC 2 cut(s) 146, 900
TseI GCWGC 6 cut(s) 492, 594, 597, 629, 804, 1055
Tsp45I GTSAC 2 cut(s) 146, 900
TspDTI ATGAA 9 cut(s) 480, 639, 801, 863, 957, 960, 1023, 1029, 1101
TspGWI ACGGA 1 cut(s) 1290
TspRI CASTG 3 cut(s) 357, 514, 1385
XapI RAATTY 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 2 cut(s) 44, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.