Rmu_sc0002119.1_g000005
NAC Family

(NAC) domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002119.1
Physical Location & Seq
Forward (+)
22238 .. 25170
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002119.1_g000005.1.cds

Sequence Viewer

Length: 1764 bp
atgatgatcagcagcggccggatcacacttccaaagggtttccgattccagccatccgacgaggagctgctgagtcattacttggagaagaagcagaatcagcccaaggatccccaaatcgaggccatcatcccagaaatcaatgtgtccgaccacgagccccgcgatttaccagcactggtgttcaaaagggcggaatttctggacaaggagtggttcaccatggcggactctccggacatggagtggtacttcttcagtccgctagtttttaaacacagcactagcaaaagcaaaggcaaaggcaaaggcaaagacaaaagcaaaagcactcaaatcaacagggctaccaaggaaggctcctggaagaagcaaggcggtgacaaaagaatcactcggccctattcagataagcagatcggggggaagaggatcttgaccttctacctgcgggataaacagaggactgactgggttatccatgagtattatctcaccaaggccaattctgatgagcaggtcggggactttgttctctgccgcttgaagaacaagtcaggcaagtttgatcatgatcagcaggatgatccactgtgcgatggaggtgaacctaatagtggtagctgcagtatggtcaccaatgttgaagatcaaggatccaaagagctgggaactgttcttccgatttccaatatcaatgatgatgaagctgaacatggtggcggtagctgcagtatggccttcaatgttgaaaatcaaccatccaaacagctggagactgttcttccgattcccaatcgcagtgatggtgacactgaacatggtggtggcagctgccacgtcgcctctggtttcgaaaatgaagctgcagaatttggttttcttacagaagaagaaataaaccagacattcaaggagctgatagatgctgttggggaatatgatggcaatgaacaagaagttagaggctcacaaactgatttttgttatattgatcagaatgatcattggatctctgttgaagatcaaccagctgatagctgcaattcatctgattccaatatggttgaaaagccacttgatgagccaggaaatctggccttaccccttcatccacctccgccacccaatatgtttgaaaagccacttgatgagccaggaaatctggccttaccccttcatccacctccatcacctcaactgcagtcaccaatatacacaaagctgggcaccaccaatgttgaaaatgatgaatctcgtaagaggaaatattcatttggggataatgacccttttcttacgaagaagaatcatattgatgaagtagatagcaactcttcatctaattctgaaaatcaagctgcggatgcgattccagagggatattctcaaccaggagaaaatctggaatctgaatcatttcagtcgcaggaactaccatcaataaacagagaaccgggagattttccccatgacaataatttaattgaatggggtaagtttccacctatagcagaaggttttgactcttctctcgagttctcagatacatttattgattgctacccctgtgacggaaacaccgaagtcatctctgtatcgaagaaactgaaagtcctggaagcagacaacagttcgaagctggcagcaatttataggattcttccattttccaggaagcatctccttcaaacagtaaagcatacggaccgagttcgtagtcctagcctgagaggccactatggacaaacaactgtagcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

587

Amino Acids

65.69

Weight (kDa)

4.87

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 456, 508
AccB1I GGYRCC 1 cut(s) 1229
AccII CGCG 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 235
AclWI GGATC 8 cut(s) 29, 104, 117, 440, 581, 651, 664, 1019
AcoI YGGCCR 1 cut(s) 16
AcsI RAATTY 2 cut(s) 197, 872
AcuI CTGAAG 1 cut(s) 241
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 3 cut(s) 121, 617, 1574
AjiI CACGTC 1 cut(s) 841
AjnI CCWGG 6 cut(s) 362, 1087, 1156, 1393, 1617, 1673
AloI GAACNNNNNNTCC 2 cut(s) 664, 696
Alw26I GTCTC 1 cut(s) 770
AlwI GGATC 8 cut(s) 29, 104, 117, 440, 581, 651, 664, 1019
Ama87I CYCGRG 1 cut(s) 1535
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 8 cut(s) 16, 123, 398, 501, 738, 1098, 1167, 1735
ApoI RAATTY 2 cut(s) 197, 872
Asp700I GAANNNNTTC 1 cut(s) 1419
AspS9I GGNCC 2 cut(s) 399, 1708
AsuC2I CCSGG 1 cut(s) 1458
AsuHPI GGTGA 8 cut(s) 211, 392, 487, 617, 628, 821, 1185, 1200
AsuII TTCGAA 2 cut(s) 855, 1637
AvaI CYCGRG 1 cut(s) 1535
AvaII GGWCC 1 cut(s) 1708
BaeGI GKGCMC 1 cut(s) 1232
BamHI GGATCC 2 cut(s) 109, 656
BanI GGYRCC 1 cut(s) 1229
BanII GRGCYC 1 cut(s) 162
BauI CACGAG 1 cut(s) 155
BccI CCATC 8 cut(s) 61, 134, 593, 769, 800, 938, 1198, 1447
BciT130I CCWGG 6 cut(s) 364, 1089, 1158, 1395, 1619, 1675
BclI TGATCA 5 cut(s) 6, 568, 574, 994, 1003
BcnI CCSGG 1 cut(s) 1458
BcoDI GTCTC 1 cut(s) 770
BfaI CTAG 3 cut(s) 266, 285, 1725
BfmI CTRYAG 6 cut(s) 625, 730, 867, 1202, 1509, 1755
BfuAI ACCTGC 2 cut(s) 456, 508
BglI GCCNNNNNGGC 1 cut(s) 1734
Bme1390I CCNGG 7 cut(s) 364, 1089, 1158, 1395, 1458, 1619, 1675
Bme18I GGWCC 1 cut(s) 1708
BmeT110I CYCGRG 1 cut(s) 1535
BmgBI CACGTC 1 cut(s) 841
BmgT120I GGNCC 2 cut(s) 399, 1708
BmiI GGNNCC 4 cut(s) 111, 361, 658, 1231
BmrFI CCNGG 7 cut(s) 364, 1089, 1158, 1395, 1458, 1619, 1675
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 3 cut(s) 916, 1357, 1690
BmuI ACTGGG 1 cut(s) 481
BpmI CTGGAG 1 cut(s) 794
Bpu14I TTCGAA 2 cut(s) 855, 1637
BpuMI CCSGG 1 cut(s) 1458
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 4 cut(s) 105, 222, 351, 498
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 617, 1574
Bse1I ACTGG 2 cut(s) 183, 476
Bse3DI GCAATG 1 cut(s) 955
Bse8I GATNNNNATC 1 cut(s) 573
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 6 cut(s) 364, 1089, 1158, 1395, 1619, 1675
BseDI CCNNGG 4 cut(s) 105, 222, 351, 498
BseGI GGATG 7 cut(s) 53, 129, 589, 761, 1111, 1180, 1372
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 3 cut(s) 121, 617, 1574
BseMI GCAATG 1 cut(s) 955
BseMII CTCAG 3 cut(s) 62, 1557, 1721
BseNI ACTGG 2 cut(s) 183, 476
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 1232
BseX3I CGGCCG 1 cut(s) 16
BseYI CCCAGC 2 cut(s) 667, 1225
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 8 cut(s) 18, 125, 400, 503, 740, 1100, 1169, 1737
BshNI GGYRCC 1 cut(s) 1229
BsiEI CGRYCG 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 1535
BsiSI CCGG 3 cut(s) 19, 236, 1457
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 3 cut(s) 121, 617, 1574
BsmAI GTCTC 1 cut(s) 770
BsmFI GGGAC 1 cut(s) 539
BsnI GGCC 8 cut(s) 18, 125, 400, 503, 740, 1100, 1169, 1737
BsoBI CYCGRG 1 cut(s) 1535
Bsp119I TTCGAA 2 cut(s) 855, 1637
Bsp1286I GDGCHC 2 cut(s) 162, 1232
Bsp13I TCCGGA 1 cut(s) 235
Bsp19I CCATGG 1 cut(s) 222
BspANI GGCC 8 cut(s) 18, 125, 400, 503, 740, 1100, 1169, 1737
BspCNI CTCAG 3 cut(s) 63, 1556, 1722
BspEI TCCGGA 1 cut(s) 235
BspFNI CGCG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 4 cut(s) 111, 361, 658, 1231
BspMAI CTGCAG 4 cut(s) 629, 734, 871, 1206
BspMI ACCTGC 2 cut(s) 456, 508
BspPI GGATC 8 cut(s) 29, 104, 117, 440, 581, 651, 664, 1019
BspT104I TTCGAA 2 cut(s) 855, 1637
BspT107I GGYRCC 1 cut(s) 1229
BsrDI GCAATG 1 cut(s) 955
BsrI ACTGG 2 cut(s) 183, 476
BssECI CCNNGG 4 cut(s) 105, 222, 351, 498
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 4 cut(s) 105, 222, 351, 498
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 6 cut(s) 364, 1089, 1158, 1395, 1619, 1675
Bst4CI ACNGT 6 cut(s) 594, 676, 781, 1634, 1696, 1756
Bst6I CTCTTC 3 cut(s) 422, 1342, 1534
BstBI TTCGAA 2 cut(s) 855, 1637
BstC8I GCNNGC 1 cut(s) 1644
BstDEI CTNAG 3 cut(s) 71, 1543, 1730
BstDSI CCRYGG 1 cut(s) 222
BstEII GGTNACC 1 cut(s) 634
BstF5I GGATG 7 cut(s) 53, 129, 589, 761, 1111, 1180, 1372
BstFNI CGCG 1 cut(s) 165
BstMAI GTCTC 1 cut(s) 770
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 4 cut(s) 100, 729, 1367, 1734
BstNI CCWGG 6 cut(s) 364, 1089, 1158, 1395, 1619, 1675
BstPI GGTNACC 1 cut(s) 634
BstSCI CCNGG 7 cut(s) 362, 1087, 1156, 1393, 1456, 1617, 1673
BstSFI CTRYAG 6 cut(s) 625, 730, 867, 1202, 1509, 1755
BstSLI GKGCMC 1 cut(s) 1232
BstUI CGCG 1 cut(s) 165
BstX2I RGATCY 4 cut(s) 109, 432, 656, 1011
BstXI CCANNNNNNTGG 2 cut(s) 667, 772
BstYI RGATCY 4 cut(s) 109, 432, 656, 1011
BstZI CGGCCG 1 cut(s) 16
BsuRI GGCC 8 cut(s) 18, 125, 400, 503, 740, 1100, 1169, 1737
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 841
BtsCI GGATG 7 cut(s) 53, 129, 589, 761, 1111, 1180, 1372
BtsI GCAGTG 1 cut(s) 808
BtsIMutI CAGTG 4 cut(s) 176, 590, 808, 813
BveI ACCTGC 2 cut(s) 456, 508
Cac8I GCNNGC 1 cut(s) 1644
CciI TCATGA 1 cut(s) 571
Cfr13I GGNCC 2 cut(s) 399, 1708
CpoI CGGWCCG 1 cut(s) 1708
Csp6I GTAC 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 1222, 1257
CspI CGGWCCG 1 cut(s) 1708
CviAII CATG 7 cut(s) 223, 241, 482, 572, 716, 821, 1472
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 3 cut(s) 71, 1543, 1730
DraI TTTAAA 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 16
EagI CGGCCG 1 cut(s) 16
Eam1104I CTCTTC 3 cut(s) 422, 1342, 1534
EarI CTCTTC 3 cut(s) 422, 1342, 1534
EciI GGCGGA 3 cut(s) 209, 242, 1110
EclXI CGGCCG 1 cut(s) 16
Eco130I CCWWGG 4 cut(s) 105, 222, 351, 498
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 1708
Eco52I CGGCCG 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 1535
Eco91I GGTNACC 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 634
EcoRII CCWGG 6 cut(s) 362, 1087, 1156, 1393, 1617, 1673
EcoT14I CCWWGG 4 cut(s) 105, 222, 351, 498
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 4 cut(s) 105, 222, 351, 498
FaeI CATG 7 cut(s) 226, 244, 485, 575, 719, 824, 1475
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 539
FatI CATG 7 cut(s) 222, 240, 481, 571, 715, 820, 1471
FauI CCCGC 2 cut(s) 170, 444
FbaI TGATCA 5 cut(s) 6, 568, 574, 994, 1003
FokI GGATG 7 cut(s) 40, 116, 596, 748, 1098, 1167, 1379
FriOI GRGCYC 1 cut(s) 162
FspBI CTAG 3 cut(s) 266, 285, 1725
GsaI CCCAGC 2 cut(s) 671, 1229
GsuI CTGGAG 1 cut(s) 794
HaeIII GGCC 8 cut(s) 18, 125, 400, 503, 740, 1100, 1169, 1737
HapII CCGG 3 cut(s) 19, 236, 1457
Hin1II CATG 7 cut(s) 226, 244, 485, 575, 719, 824, 1475
HpaII CCGG 3 cut(s) 19, 236, 1457
HphI GGTGA 8 cut(s) 211, 392, 487, 617, 628, 821, 1185, 1200
Hpy166II GTNNAC 2 cut(s) 219, 608
Hpy188III TCNNGA 7 cut(s) 203, 236, 436, 572, 1376, 1406, 1535
Hpy8I GTNNAC 2 cut(s) 219, 608
Hpy99I CGWCG 2 cut(s) 62, 845
HpyAV CCTTC 7 cut(s) 350, 451, 751, 1118, 1187, 1511, 1697
HpyCH4III ACNGT 6 cut(s) 594, 676, 781, 1634, 1696, 1756
HpyCH4IV ACGT 1 cut(s) 840
HpyCH4V TGCA 5 cut(s) 627, 732, 869, 1044, 1204
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 729, 1367, 1734
HpyF3I CTNAG 3 cut(s) 71, 1543, 1730
HpySE526I ACGT 1 cut(s) 840
Hsp92II CATG 7 cut(s) 226, 244, 485, 575, 719, 824, 1475
Kpn2I TCCGGA 1 cut(s) 235
Ksp22I TGATCA 5 cut(s) 6, 568, 574, 994, 1003
LmnI GCTCC 3 cut(s) 64, 365, 916
LweI GCATC 3 cut(s) 916, 1357, 1690
MaeI CTAG 3 cut(s) 266, 285, 1725
MaeII ACGT 1 cut(s) 840
MaeIII GTNAC 5 cut(s) 380, 634, 809, 1206, 1571
MflI RGATCY 4 cut(s) 109, 432, 656, 1011
MhlI GDGCHC 2 cut(s) 162, 1232
MluCI AATT 8 cut(s) 197, 505, 872, 1045, 1345, 1480, 1485, 1650
MlyI GAGTC 3 cut(s) 82, 224, 1520
MmeI TCCRAC 2 cut(s) 81, 174
MroI TCCGGA 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 1419
MseI TTAA 2 cut(s) 273, 1484
MslI CAYNNNNRTG 2 cut(s) 825, 1317
MspA1I CMGCKG 4 cut(s) 15, 772, 834, 1034
MspI CCGG 3 cut(s) 19, 236, 1457
MspR9I CCNGG 7 cut(s) 364, 1089, 1158, 1395, 1458, 1619, 1675
MvaI CCWGG 6 cut(s) 364, 1089, 1158, 1395, 1619, 1675
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 4 cut(s) 100, 729, 1367, 1734
NciI CCSGG 1 cut(s) 1458
NcoI CCATGG 1 cut(s) 222
NlaIII CATG 7 cut(s) 226, 244, 485, 575, 719, 824, 1475
NlaIV GGNNCC 4 cut(s) 111, 361, 658, 1231
NmeAIII GCCGAG 1 cut(s) 376
NmuCI GTSAC 5 cut(s) 380, 634, 809, 1206, 1571
NspV TTCGAA 2 cut(s) 855, 1637
PaeR7I CTCGAG 1 cut(s) 1535
PagI TCATGA 1 cut(s) 571
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 1581
PdmI GAANNNNTTC 1 cut(s) 1419
PfoI TCCNGGA 3 cut(s) 362, 1617, 1673
PleI GAGTC 3 cut(s) 81, 224, 1520
PpsI GAGTC 3 cut(s) 81, 224, 1520
Psp6I CCWGG 6 cut(s) 362, 1087, 1156, 1393, 1617, 1673
PspEI GGTNACC 1 cut(s) 634
PspFI CCCAGC 2 cut(s) 667, 1225
PspGI CCWGG 6 cut(s) 362, 1087, 1156, 1393, 1617, 1673
PspN4I GGNNCC 4 cut(s) 111, 361, 658, 1231
PspPI GGNCC 2 cut(s) 399, 1708
PstI CTGCAG 4 cut(s) 629, 734, 871, 1206
PsuI RGATCY 4 cut(s) 109, 432, 656, 1011
PvuII CAGCTG 3 cut(s) 772, 834, 1034
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 825, 1317
Rsr2I CGGWCCG 1 cut(s) 1708
RsrII CGGWCCG 1 cut(s) 1708
SaqAI TTAA 2 cut(s) 273, 1484
Sau96I GGNCC 2 cut(s) 399, 1708
SchI GAGTC 3 cut(s) 82, 224, 1520
ScrFI CCNGG 7 cut(s) 364, 1089, 1158, 1395, 1458, 1619, 1675
SduI GDGCHC 2 cut(s) 162, 1232
SfaNI GCATC 3 cut(s) 916, 1357, 1690
SfcI CTRYAG 6 cut(s) 625, 730, 867, 1202, 1509, 1755
Sfr274I CTCGAG 1 cut(s) 1535
SfuI TTCGAA 2 cut(s) 855, 1637
SinI GGWCC 1 cut(s) 1708
SlaI CTCGAG 1 cut(s) 1535
SmiMI CAYNNNNRTG 2 cut(s) 825, 1317
SmlI CTYRAG 1 cut(s) 1535
SmoI CTYRAG 1 cut(s) 1535
Sse9I AATT 8 cut(s) 197, 505, 872, 1045, 1345, 1480, 1485, 1650
SspI AATATT 1 cut(s) 1271
SspMI CTAG 3 cut(s) 266, 285, 1725
StyD4I CCNGG 7 cut(s) 362, 1087, 1156, 1393, 1456, 1617, 1673
StyI CCWWGG 4 cut(s) 105, 222, 351, 498
TaaI ACNGT 6 cut(s) 594, 676, 781, 1634, 1696, 1756
TaiI ACGT 1 cut(s) 843
TaqI TCGA 5 cut(s) 120, 855, 1536, 1601, 1637
TaqII GACCGA 1 cut(s) 1725
TasI AATT 8 cut(s) 197, 505, 872, 1045, 1345, 1480, 1485, 1650
TauI GCSGC 2 cut(s) 18, 543
Tru1I TTAA 2 cut(s) 273, 1484
Tru9I TTAA 2 cut(s) 273, 1484
TscAI CASTG 4 cut(s) 183, 597, 808, 820
TseFI GTSAC 5 cut(s) 380, 634, 809, 1206, 1571
Tsp45I GTSAC 5 cut(s) 380, 634, 809, 1206, 1571
TspGWI ACGGA 2 cut(s) 1590, 1721
TspRI CASTG 4 cut(s) 183, 597, 808, 820
VpaK11BI GGWCC 1 cut(s) 1708
XapI RAATTY 2 cut(s) 197, 872
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
XhoI CTCGAG 1 cut(s) 1535
XmnI GAANNNNTTC 1 cut(s) 1419
XspI CTAG 3 cut(s) 266, 285, 1725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.