Rmu_sc0042164.1_g000001
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042164.1
OG0002549
Physical Location & Seq
Forward (+)
555 .. 1071
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042164.1_g000001.1.cds

Sequence Viewer

Length: 336 bp
atgagcagcggctgcattacacttcctaagggtttccgattccagccctccgacgaagagctgctgagtcattacttggagaagaagaatcagcgcaaggatccccaaatcgaggccatcatccctgaaatcgatgtgtgcaagcacgagccccgtgacttaccagcactggtgttcacaagggcggaatttctggagagggcgtggttcaccatggcggactctccggacatgcagtggtacttcttcagtccgagagtttttaaacacagcaaaagcaaaagcactcggtccaacaggaccacggaggaaggctcctggaagaagcaaggcaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

112

Amino Acids

13.18

Weight (kDa)

8.95

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 3 cut(s) 9, 185, 218
AclWI GGATC 2 cut(s) 95, 108
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 232
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 112
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
AlwI GGATC 2 cut(s) 95, 108
AlwNI CAGNNNCTG 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 6, 12, 61
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 291, 300
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 2 cut(s) 291, 300
AxyI CCTNAGG 1 cut(s) 27
BamHI GGATCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 1 cut(s) 146
BbvI GCAGC 2 cut(s) 18, 48
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 319
BisI GCNGC 4 cut(s) 7, 10, 13, 62
BlsI GCNGC 4 cut(s) 8, 11, 14, 63
Bme1390I CCNGG 1 cut(s) 319
Bme18I GGWCC 2 cut(s) 291, 300
BmgT120I GGNCC 2 cut(s) 291, 300
BmiI GGNNCC 2 cut(s) 102, 316
BmrFI CCNGG 1 cut(s) 319
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 213, 303
BsaWI WCCGGW 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 174
Bse21I CCTNAGG 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 1 cut(s) 319
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 213, 303
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 174
BseXI GCAGC 2 cut(s) 18, 48
BshFI GGCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 112
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 153
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 1 cut(s) 100
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 3 cut(s) 9, 185, 218
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 102, 316
BspPI GGATC 2 cut(s) 95, 108
BspQI GCTCTTC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 213, 303
BssMI GATC 1 cut(s) 100
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 27, 65
BstDSI CCRYGG 2 cut(s) 213, 303
BstF5I GGATG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 18, 48
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 132
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 132
BtgI CCRYGG 2 cut(s) 213, 303
BtsCI GGATG 1 cut(s) 120
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 167, 242
Cac8I GCNNGC 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 12
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 2 cut(s) 291, 300
ClaI ATCGAT 1 cut(s) 132
Csp6I GTAC 1 cut(s) 241
CviAII CATG 2 cut(s) 214, 232
CviJI RGCY 6 cut(s) 12, 46, 61, 116, 151, 315
CviKI_1 RGCY 6 cut(s) 12, 46, 61, 116, 151, 315
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 27, 65
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DraI TTTAAA 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EciI GGCGGA 2 cut(s) 200, 233
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 291, 300
Eco57I CTGAAG 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 217, 235
FaiI YATR 2 cut(s) 215, 233
FatI CATG 2 cut(s) 213, 231
Fnu4HI GCNGC 4 cut(s) 7, 10, 13, 62
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 4 cut(s) 7, 10, 13, 62
GlaI GCGC 1 cut(s) 95
GluI GCNGC 4 cut(s) 7, 10, 13, 62
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 217, 235
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 4 cut(s) 39, 67, 88, 221
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 177, 210
Hpy188I TCNGA 3 cut(s) 38, 52, 255
Hpy188III TCNNGA 2 cut(s) 194, 227
Hpy8I GTNNAC 2 cut(s) 177, 210
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 15, 141, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 2 cut(s) 27, 65
Hsp92II CATG 2 cut(s) 217, 235
HspAI GCGC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 100
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 9 cut(s) 56, 138, 155, 177, 179, 240, 283, 304, 331
Lsp1109I GCAGC 2 cut(s) 18, 48
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 5 cut(s) 68, 94, 97, 238, 334
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 188
MlyI GAGTC 2 cut(s) 76, 215
MmeI TCCRAC 2 cut(s) 75, 318
MnlI CCTC 4 cut(s) 58, 106, 192, 301
MroI TCCGGA 1 cut(s) 226
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 319
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 12
NcoI CCATGG 1 cut(s) 213
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 217, 235
NlaIV GGNNCC 2 cut(s) 102, 316
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 51
PfeI GAWTC 2 cut(s) 39, 88
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 4 cut(s) 8, 11, 14, 63
PleI GAGTC 2 cut(s) 75, 215
PpsI GAGTC 2 cut(s) 75, 215
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 2 cut(s) 102, 316
PspPI GGNCC 2 cut(s) 291, 300
PstNI CAGNNNCTG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 4 cut(s) 7, 10, 13, 62
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 2 cut(s) 291, 300
SchI GAGTC 2 cut(s) 76, 215
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 1 cut(s) 153
SetI ASST 1 cut(s) 63
SinI GGWCC 2 cut(s) 291, 300
Sse9I AATT 1 cut(s) 188
SsiI CCGC 3 cut(s) 9, 185, 218
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 213
TaqI TCGA 2 cut(s) 111, 132
TaqII GACCGA 1 cut(s) 279
TasI AATT 1 cut(s) 188
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 2 cut(s) 39, 88
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 174, 242
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 3 cut(s) 6, 12, 61
Tsp45I GTSAC 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 174, 242
VpaK11BI GGWCC 2 cut(s) 291, 300
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.