Rw1G026600
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002549
Physical Location & Seq
Reverse (-)
53826216 .. 53828448
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026600.1

Sequence Viewer

Length: 1593 bp
ATGATCAGCAGCGGCCGGATCACACTTCCAAAGGGTTTCCGATTCCAGCCATCCGACGAGGAGCTGCTGAGTCATTACTTGGAGAAGAAGCAGAATCAGCCCAAGGATCCCCAAATCGAGGCCATCATCCCAGAAATCAATGTGTGCGACCACGAACCCCGCGATTTACCAGCACTGGTGTTCAAAAGGGCGGAATTTCTGGACAAGGAGTGGTTCACCATAGCGGACTCTCCAGACATGGAGTGGTACTTCTTCAGTCCGCTAGTTTTTAAACACAGCACTAGCAAAAGCAAAGGCAAAGGCAAAGGCAAAAGCAAAAGCACTCAAATCAACAGGGCTACCAAGGAAGGCTCCTGGAAGAAGCAAGGCGATGACAAAAGAATCACTCGGCCCTATTCAGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCTGCGGGATAAACAGAGGACTGACTGGGTTATCCATGAGTATTATCTCACCAAGGCCAATTCTGATGAGCAGGTCGGGGACTTTGTTCTCTGCCGCTTGAAGAACAAGTCAGGCAAGTTTGATCATGATCAGCAGGATGATCCACTGTGCGATGGAGGTGAACCTAATAATGGTAGCTGCAGTATGGTATCCAATGTTGAACATCAAGGATCCAAAGAGCTGGGAGCTGTTCTTCCGATTTCCAATATCAATGATGATGAAGCTGAACATGGTGGCGGTAGCTGCAGTATGGCCTTCAATGTTGATAATCAACCATCCAAACAGCTGGAGAATGTTCTTCCGATTCCCAATCGCAGTGATGGTGACACTGAACATGGTGGTGGCAGCTGCCACGTCGCCTCTGGTTTCGAAAATGAAGCCGCGGAATTTGGTTTTCTTACAGAAGAAGAAATAAACCAGACATTCAAGGAGCTGATAGATGCTCTTCGGGAATATGATGGCAATGAACAAGAAGTTAGAGGCTCACAAACTGATTTTTGTTATATTGATCAGAATGATCATTGGATCTCTGTTGAAGATCAAGCAGCTGATAGCTGCAATTCATCTGATTCCAATATGGTTGAAAAGCCACTTGATGAGCCAGGAAATCTGGCCTTACCCCTTCATCCACCTCCATCACCTCAACTGCAGTCACCAATATACACAAAGCTGGGCACCACCAATGTTGAAAATGATGAATCTCGTAAGAGGAAATATTCATTTGGGGATAATGACCCTTTTCTTACGAAGAAGAATCATATTGATGAAGTAGATAGCAACTCTTCATCTAATTCTGAAAATCAAGCTGCGGATGCGATTCCAGAGGGATATTCTCAACCAGGAGAAAATCTGGAATCTGAATCATTTCAGTCGCAGGAACTACCATCAATAAACAGAGAACCGGGAGATTTTCCCCATGACAATAATAGTTTTATTGAATGGGATGATTTTCCATCTATAACAGATGGTAGATTTATTGATGGAGGTAGCAGTGACGCAAACACCGAAGTCAACTATATGTCCGTAAACGATTATTCTACATTAGCCATAGGAGAAACACCCAATGTAGCTAATCAACCTTTATTTATAGGAGAATATCAGTGGAGGCCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

530

Amino Acids

59.49

Weight (kDa)

4.62

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 161 1.1e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 447, 499
AccB1I GGYRCC 1 cut(s) 1151
AccII CGCG 2 cut(s) 162, 860
AclWI GGATC 8 cut(s) 26, 101, 114, 431, 572, 642, 655, 1010
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 2 cut(s) 194, 863
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 118, 608
AgsI TTSAA 9 cut(s) 184, 538, 638, 736, 904, 1013, 1061, 1166, 1415
AjiI CACGTC 1 cut(s) 832
AjnI CCWGG 3 cut(s) 353, 1078, 1315
AlwI GGATC 8 cut(s) 26, 101, 114, 431, 572, 642, 655, 1010
AoxI GGCC 7 cut(s) 13, 120, 389, 492, 729, 1089, 1583
ApeKI GCWGC 9 cut(s) 9, 64, 615, 720, 822, 825, 1022, 1032, 1283
ApoI RAATTY 2 cut(s) 194, 863
Asp700I GAANNNNTTC 1 cut(s) 1341
AspS9I GGNCC 1 cut(s) 390
AsuC2I CCSGG 1 cut(s) 1380
AsuHPI GGTGA 6 cut(s) 208, 478, 608, 812, 1107, 1122
AsuII TTCGAA 1 cut(s) 846
BaeGI GKGCMC 1 cut(s) 1154
BamHI GGATCC 2 cut(s) 106, 647
BanI GGYRCC 1 cut(s) 1151
BbvI GCAGC 9 cut(s) 21, 51, 602, 707, 812, 834, 1019, 1034, 1270
BciT130I CCWGG 3 cut(s) 355, 1080, 1317
BciVI GTATCC 1 cut(s) 637
BclI TGATCA 5 cut(s) 3, 559, 565, 985, 994
BcnI CCSGG 1 cut(s) 1380
BfaI CTAG 2 cut(s) 263, 282
BfmI CTRYAG 3 cut(s) 616, 721, 1124
BfuAI ACCTGC 2 cut(s) 447, 499
BfuI GTATCC 1 cut(s) 637
Bme1390I CCNGG 4 cut(s) 355, 1080, 1317, 1380
BmgBI CACGTC 1 cut(s) 832
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 4 cut(s) 108, 352, 649, 1153
BmrFI CCNGG 4 cut(s) 355, 1080, 1317, 1380
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 2 cut(s) 907, 1279
BmuI ACTGGG 1 cut(s) 472
BpmI CTGGAG 2 cut(s) 216, 785
Bpu14I TTCGAA 1 cut(s) 846
BpuMI CCSGG 1 cut(s) 1380
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 102, 342, 489, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 608
Bse1I ACTGG 2 cut(s) 180, 467
Bse3DI GCAATG 1 cut(s) 946
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 3 cut(s) 355, 1080, 1317
BseDI CCNNGG 4 cut(s) 102, 342, 489, 858
BseGI GGATG 7 cut(s) 50, 126, 580, 752, 1102, 1294, 1426
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 2 cut(s) 118, 608
BseMI GCAATG 1 cut(s) 946
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 2 cut(s) 180, 467
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 1154
BseX3I CGGCCG 1 cut(s) 13
BseXI GCAGC 9 cut(s) 21, 51, 602, 707, 812, 834, 1019, 1034, 1270
BseYI CCCAGC 2 cut(s) 658, 1147
Bsh1236I CGCG 2 cut(s) 162, 860
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 7 cut(s) 15, 122, 391, 494, 731, 1091, 1585
BshNI GGYRCC 1 cut(s) 1151
BsiEI CGRYCG 1 cut(s) 16
BsiSI CCGG 2 cut(s) 16, 1379
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 2 cut(s) 118, 608
BsmFI GGGAC 1 cut(s) 530
BsnI GGCC 7 cut(s) 15, 122, 391, 494, 731, 1091, 1585
Bsp119I TTCGAA 1 cut(s) 846
Bsp1286I GDGCHC 1 cut(s) 1154
BspANI GGCC 7 cut(s) 15, 122, 391, 494, 731, 1091, 1585
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 2 cut(s) 162, 860
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 4 cut(s) 108, 352, 649, 1153
BspMAI CTGCAG 3 cut(s) 620, 725, 1128
BspMI ACCTGC 2 cut(s) 447, 499
BspPI GGATC 8 cut(s) 26, 101, 114, 431, 572, 642, 655, 1010
BspQI GCTCTTC 1 cut(s) 927
BspT104I TTCGAA 1 cut(s) 846
BspT107I GGYRCC 1 cut(s) 1151
BsrDI GCAATG 1 cut(s) 946
BsrI ACTGG 2 cut(s) 180, 467
BssECI CCNNGG 4 cut(s) 102, 342, 489, 858
BssT1I CCWWGG 3 cut(s) 102, 342, 489
Bst2UI CCWGG 3 cut(s) 355, 1080, 1317
Bst4CI ACNGT 2 cut(s) 585, 1590
Bst6I CTCTTC 3 cut(s) 413, 927, 1264
BstBI TTCGAA 1 cut(s) 846
BstDEI CTNAG 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 858
BstF5I GGATG 7 cut(s) 50, 126, 580, 752, 1102, 1294, 1426
BstFNI CGCG 2 cut(s) 162, 860
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 97, 720, 1289
BstNI CCWGG 3 cut(s) 355, 1080, 1317
BstSCI CCNGG 4 cut(s) 353, 1078, 1315, 1378
BstSFI CTRYAG 3 cut(s) 616, 721, 1124
BstSLI GKGCMC 1 cut(s) 1154
BstUI CGCG 2 cut(s) 162, 860
BstV1I GCAGC 9 cut(s) 21, 51, 602, 707, 812, 834, 1019, 1034, 1270
BstX2I RGATCY 4 cut(s) 106, 423, 647, 1002
BstXI CCANNNNNNTGG 2 cut(s) 658, 763
BstYI RGATCY 4 cut(s) 106, 423, 647, 1002
BstZI CGGCCG 1 cut(s) 13
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 7 cut(s) 15, 122, 391, 494, 731, 1091, 1585
BtgI CCRYGG 1 cut(s) 858
BtgZI GCGATG 2 cut(s) 384, 603
BtrI CACGTC 1 cut(s) 832
BtsCI GGATG 7 cut(s) 50, 126, 580, 752, 1102, 1294, 1426
BtsI GCAGTG 2 cut(s) 799, 1474
BtsIMutI CAGTG 6 cut(s) 173, 581, 799, 804, 1474, 1583
BveI ACCTGC 2 cut(s) 447, 499
CciI TCATGA 1 cut(s) 562
Cfr13I GGNCC 1 cut(s) 390
Cfr42I CCGCGG 1 cut(s) 861
CseI GACGC 1 cut(s) 1481
Csp6I GTAC 1 cut(s) 247
CspCI CAANNNNNGTGG 2 cut(s) 1144, 1179
CviAII CATG 6 cut(s) 238, 473, 563, 707, 812, 1394
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 68
DraI TTTAAA 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 13
EagI CGGCCG 1 cut(s) 13
Eam1104I CTCTTC 3 cut(s) 413, 927, 1264
EarI CTCTTC 3 cut(s) 413, 927, 1264
EciI GGCGGA 1 cut(s) 206
EclXI CGGCCG 1 cut(s) 13
Eco130I CCWWGG 3 cut(s) 102, 342, 489
Eco52I CGGCCG 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 238
EcoRII CCWGG 3 cut(s) 353, 1078, 1315
EcoT14I CCWWGG 3 cut(s) 102, 342, 489
ErhI CCWWGG 3 cut(s) 102, 342, 489
FaeI CATG 6 cut(s) 241, 476, 566, 710, 815, 1397
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FaqI GGGAC 1 cut(s) 530
FatI CATG 6 cut(s) 237, 472, 562, 706, 811, 1393
FauI CCCGC 2 cut(s) 167, 435
FbaI TGATCA 5 cut(s) 3, 559, 565, 985, 994
FokI GGATG 7 cut(s) 37, 113, 587, 739, 1089, 1301, 1433
FspBI CTAG 2 cut(s) 263, 282
GsaI CCCAGC 2 cut(s) 662, 1151
GsuI CTGGAG 2 cut(s) 216, 785
HaeIII GGCC 7 cut(s) 15, 122, 391, 494, 731, 1091, 1585
HapII CCGG 2 cut(s) 16, 1379
HgaI GACGC 1 cut(s) 1481
Hin1II CATG 6 cut(s) 241, 476, 566, 710, 815, 1397
HincII GTYRAC 1 cut(s) 1489
HindII GTYRAC 1 cut(s) 1489
HpaII CCGG 2 cut(s) 16, 1379
HphI GGTGA 6 cut(s) 208, 478, 608, 812, 1107, 1122
Hpy166II GTNNAC 4 cut(s) 216, 599, 1489, 1504
Hpy188III TCNNGA 7 cut(s) 200, 233, 427, 563, 926, 1298, 1328
Hpy8I GTNNAC 4 cut(s) 216, 599, 1489, 1504
Hpy99I CGWCG 2 cut(s) 59, 836
HpyAV CCTTC 4 cut(s) 341, 442, 742, 1109
HpyCH4III ACNGT 2 cut(s) 585, 1590
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 4 cut(s) 618, 723, 1035, 1126
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 720, 1289
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 831
Hsp92II CATG 6 cut(s) 241, 476, 566, 710, 815, 1397
Ksp22I TGATCA 5 cut(s) 3, 559, 565, 985, 994
KspI CCGCGG 1 cut(s) 861
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 4 cut(s) 61, 356, 662, 907
Lsp1109I GCAGC 9 cut(s) 21, 51, 602, 707, 812, 834, 1019, 1034, 1270
LweI GCATC 2 cut(s) 907, 1279
MaeI CTAG 2 cut(s) 263, 282
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 3 cut(s) 800, 1128, 1469
MflI RGATCY 4 cut(s) 106, 423, 647, 1002
MhlI GDGCHC 1 cut(s) 1154
MluCI AATT 5 cut(s) 194, 496, 863, 1036, 1267
MlyI GAGTC 2 cut(s) 79, 221
MmeI TCCRAC 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 1341
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 816, 1239
MspA1I CMGCKG 5 cut(s) 12, 763, 825, 860, 1025
MspI CCGG 2 cut(s) 16, 1379
MspR9I CCNGG 4 cut(s) 355, 1080, 1317, 1380
MvaI CCWGG 3 cut(s) 355, 1080, 1317
MvnI CGCG 2 cut(s) 162, 860
MwoI GCNNNNNNNGC 3 cut(s) 97, 720, 1289
NciI CCSGG 1 cut(s) 1380
NlaIII CATG 6 cut(s) 241, 476, 566, 710, 815, 1397
NlaIV GGNNCC 4 cut(s) 108, 352, 649, 1153
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 3 cut(s) 800, 1128, 1469
NspV TTCGAA 1 cut(s) 846
PagI TCATGA 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 927
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 1479
PdmI GAANNNNTTC 1 cut(s) 1341
PfoI TCCNGGA 1 cut(s) 353
PleI GAGTC 2 cut(s) 78, 221
PpsI GAGTC 2 cut(s) 78, 221
Psp6I CCWGG 3 cut(s) 353, 1078, 1315
PspFI CCCAGC 2 cut(s) 658, 1147
PspGI CCWGG 3 cut(s) 353, 1078, 1315
PspN4I GGNNCC 4 cut(s) 108, 352, 649, 1153
PspPI GGNCC 1 cut(s) 390
PstI CTGCAG 3 cut(s) 620, 725, 1128
PsuI RGATCY 4 cut(s) 106, 423, 647, 1002
PvuII CAGCTG 3 cut(s) 763, 825, 1025
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 816, 1239
SacII CCGCGG 1 cut(s) 861
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 2 cut(s) 79, 221
ScrFI CCNGG 4 cut(s) 355, 1080, 1317, 1380
SduI GDGCHC 1 cut(s) 1154
SfaNI GCATC 2 cut(s) 907, 1279
SfcI CTRYAG 3 cut(s) 616, 721, 1124
Sfr303I CCGCGG 1 cut(s) 861
SfuI TTCGAA 1 cut(s) 846
SgrBI CCGCGG 1 cut(s) 861
SmiMI CAYNNNNRTG 2 cut(s) 816, 1239
Sse9I AATT 5 cut(s) 194, 496, 863, 1036, 1267
SspI AATATT 1 cut(s) 1193
SspMI CTAG 2 cut(s) 263, 282
StyD4I CCNGG 4 cut(s) 353, 1078, 1315, 1378
StyI CCWWGG 3 cut(s) 102, 342, 489
TaaI ACNGT 2 cut(s) 585, 1590
TaiI ACGT 1 cut(s) 834
TaqI TCGA 2 cut(s) 117, 846
TasI AATT 5 cut(s) 194, 496, 863, 1036, 1267
TauI GCSGC 3 cut(s) 15, 534, 860
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 6 cut(s) 180, 588, 799, 811, 1474, 1583
TseFI GTSAC 3 cut(s) 800, 1128, 1469
TseI GCWGC 9 cut(s) 9, 64, 615, 720, 822, 825, 1022, 1032, 1283
Tsp45I GTSAC 3 cut(s) 800, 1128, 1469
TspDTI ATGAA 9 cut(s) 711, 867, 957, 1029, 1091, 1185, 1188, 1251, 1257
TspGWI ACGGA 1 cut(s) 1489
TspRI CASTG 6 cut(s) 180, 588, 799, 811, 1474, 1583
XapI RAATTY 2 cut(s) 194, 863
XcmI CCANNNNNNNNNTGG 2 cut(s) 240, 836
XmnI GAANNNNTTC 1 cut(s) 1341
XspI CTAG 2 cut(s) 263, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.