FvH4_7g18000
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002549
Physical Location & Seq
Reverse (-)
15131777 .. 15133084
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18000.t1

Sequence Viewer

Length: 591 bp
ATGGCGGACTCTCCGGACATGGAGTGGTACTTCTTCAGTCCTAGAGTTTTTAAGCATAGCAACAGCAAAAGCACTAAGATGAACAGGACTAGGGGGGAAGGCTTTTGGAAGAAGCAAGGCAGCGATCGCAGGATCACTGGGGCCTATTCTGATAAGCAGATTGGGGGGAAGAGGATCTTGACCTTCTTTCTGCCGAAAAAGCAGAAGATTGACTGGGTTATTCATGAGTATTATCTCACTAAGGCCGATTCTGATGAGCAGATCGGCGACTTCGTTCTCTGCCGCTTGAAGGACAACCACTTAAAGAAGAAGTCAGGCAAGTCTGAGCATGATCGGCAGGATGCTCCATTGTGCGATGGACGTGAGCCTAGTAGCGGTAGCTGCATTATGGCCTTCAATGTTGAAGGTCAAGCATCCAGTGAGCTGGGAAATGTTGTTGTGATTCCCAATGGCAATGTTGATGAAGCTGAACATGGTGGAGGTAGCTGTATTATGACCTTAAATGTTGAAAGTCCAGCATCCAAACAGCTGGAAAATGTTAGTAGAATGGTCTTGGAGCTCATTCTTGAAGGTGGAGAGAAATGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

197

Amino Acids

21.99

Weight (kDa)

7.0

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 79 1.6e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 13
AciI CCGC 3 cut(s) 5, 283, 375
AclWI GGATC 2 cut(s) 140, 182
AcuI CTGAAG 1 cut(s) 19
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 289, 374
AgsI TTSAA 5 cut(s) 289, 397, 404, 509, 569
AjiI CACGTC 1 cut(s) 362
AluBI AGCT 6 cut(s) 381, 424, 467, 486, 529, 559
AluI AGCT 6 cut(s) 381, 424, 467, 486, 529, 559
Alw21I GWGCWC 1 cut(s) 561
AlwI GGATC 2 cut(s) 140, 182
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 3 cut(s) 141, 243, 390
ApeKI GCWGC 2 cut(s) 120, 381
AsiSI GCGATCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 2 cut(s) 132, 368
BccI CCATC 1 cut(s) 350
BfaI CTAG 3 cut(s) 42, 90, 369
BisI GCNGC 3 cut(s) 121, 283, 382
BlsI GCNGC 3 cut(s) 122, 284, 383
BmgBI CACGTC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 142
BmrI ACTGGG 2 cut(s) 147, 223
BmsI GCATC 3 cut(s) 331, 422, 527
BmuI ACTGGG 2 cut(s) 147, 223
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 374
Bse1I ACTGG 3 cut(s) 142, 218, 417
Bse3DI GCAATG 1 cut(s) 460
BseAI TCCGGA 1 cut(s) 13
BseGI GGATG 3 cut(s) 346, 413, 518
BseLI CCNNNNNNNGG 2 cut(s) 289, 374
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 3 cut(s) 142, 218, 417
BseXI GCAGC 2 cut(s) 132, 368
BseYI CCCAGC 1 cut(s) 424
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 3 cut(s) 143, 245, 392
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 289, 374
BsnI GGCC 3 cut(s) 143, 245, 392
Bsp1286I GDGCHC 1 cut(s) 561
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 5 cut(s) 124, 132, 174, 261, 331
BspACI CCGC 3 cut(s) 5, 283, 375
BspANI GGCC 3 cut(s) 143, 245, 392
BspCNI CTCAG 1 cut(s) 316
BspEI TCCGGA 1 cut(s) 13
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 2 cut(s) 140, 182
BsrDI GCAATG 1 cut(s) 460
BsrI ACTGG 3 cut(s) 142, 218, 417
BssMI GATC 5 cut(s) 124, 132, 174, 261, 331
Bst6I CTCTTC 1 cut(s) 164
BstDEI CTNAG 3 cut(s) 75, 240, 324
BstF5I GGATG 3 cut(s) 346, 413, 518
BstKTI GATC 5 cut(s) 127, 135, 177, 264, 334
BstMBI GATC 5 cut(s) 124, 132, 174, 261, 331
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 4 cut(s) 126, 199, 334, 381
BstV1I GCAGC 2 cut(s) 132, 368
BstX2I RGATCY 1 cut(s) 174
BstXI CCANNNNNNTGG 2 cut(s) 424, 529
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 3 cut(s) 143, 245, 392
BtgZI GCGATG 1 cut(s) 369
BtrI CACGTC 1 cut(s) 362
BtsCI GGATG 3 cut(s) 346, 413, 518
BtsIMutI CAGTG 2 cut(s) 135, 424
CciI TCATGA 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 28
CviAII CATG 4 cut(s) 19, 224, 329, 473
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 3 cut(s) 75, 240, 324
DpnI GATC 5 cut(s) 126, 134, 176, 263, 333
DpnII GATC 5 cut(s) 124, 132, 174, 261, 331
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 559
Eco24I GRGCYC 1 cut(s) 561
Eco53kI GAGCTC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 559
EcoO109I RGGNCCY 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 561
FaeI CATG 4 cut(s) 22, 227, 332, 476
FaiI YATR 7 cut(s) 20, 57, 225, 330, 389, 474, 494
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 4 cut(s) 18, 223, 328, 472
Fnu4HI GCNGC 3 cut(s) 121, 283, 382
FokI GGATG 3 cut(s) 353, 400, 505
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 3 cut(s) 121, 283, 382
FspBI CTAG 3 cut(s) 42, 90, 369
GluI GCNGC 3 cut(s) 121, 283, 382
GsaI CCCAGC 1 cut(s) 428
HaeIII GGCC 3 cut(s) 143, 245, 392
HapII CCGG 1 cut(s) 14
Hin1II CATG 4 cut(s) 22, 227, 332, 476
HinfI GANTC 3 cut(s) 8, 248, 442
HpaII CCGG 1 cut(s) 14
Hpy188I TCNGA 3 cut(s) 151, 253, 325
Hpy188III TCNNGA 4 cut(s) 14, 178, 224, 566
HpyAV CCTTC 6 cut(s) 92, 193, 283, 398, 403, 563
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 199, 334, 381
HpyF3I CTNAG 3 cut(s) 75, 240, 324
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 4 cut(s) 22, 227, 332, 476
Kpn2I TCCGGA 1 cut(s) 13
Kzo9I GATC 5 cut(s) 124, 132, 174, 261, 331
LmnI GCTCC 2 cut(s) 349, 556
Lsp1109I GCAGC 2 cut(s) 132, 368
LweI GCATC 3 cut(s) 331, 422, 527
MaeI CTAG 3 cut(s) 42, 90, 369
MaeII ACGT 1 cut(s) 361
MaeIII GTNAC 1 cut(s) 584
MalI GATC 5 cut(s) 126, 134, 176, 263, 333
MboI GATC 5 cut(s) 124, 132, 174, 261, 331
MboII GAAGA 5 cut(s) 25, 121, 181, 217, 319
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 561
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 2 cut(s) 165, 473
MroI TCCGGA 1 cut(s) 13
MseI TTAA 3 cut(s) 51, 302, 500
MslI CAYNNNNRTG 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 4 cut(s) 126, 199, 334, 381
NdeII GATC 5 cut(s) 124, 132, 174, 261, 331
NlaIII CATG 4 cut(s) 22, 227, 332, 476
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 584
PagI TCATGA 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 2 cut(s) 248, 442
PkrI GCNGC 3 cut(s) 122, 284, 383
Ple19I CGATCG 1 cut(s) 127
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp124BI GAGCTC 1 cut(s) 561
PspFI CCCAGC 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 174
PvuI CGATCG 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 529
RgaI GCGATCGC 1 cut(s) 127
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 77
SacI GAGCTC 1 cut(s) 561
SaqAI TTAA 3 cut(s) 51, 302, 500
SatI GCNGC 3 cut(s) 121, 283, 382
Sau3AI GATC 5 cut(s) 124, 132, 174, 261, 331
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 1 cut(s) 2
SduI GDGCHC 1 cut(s) 561
SfaAI GCGATCGC 1 cut(s) 127
SfaNI GCATC 3 cut(s) 331, 422, 527
SgfI GCGATCGC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 77
SsiI CCGC 3 cut(s) 5, 283, 375
SspMI CTAG 3 cut(s) 42, 90, 369
SstI GAGCTC 1 cut(s) 561
TaiI ACGT 1 cut(s) 364
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 2 cut(s) 248, 442
Tru1I TTAA 3 cut(s) 51, 302, 500
Tru9I TTAA 3 cut(s) 51, 302, 500
TscAI CASTG 2 cut(s) 142, 424
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 2 cut(s) 120, 381
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 3 cut(s) 95, 212, 477
TspRI CASTG 2 cut(s) 142, 424
XspI CTAG 3 cut(s) 42, 90, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.