RLG00000029533
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002549
Physical Location & Seq
Forward (+)
39970022 .. 39972249
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029533

Sequence Viewer

Length: 1446 bp
ATGATGCAAGCCTCTCCATCCCACTCAGCTGAACTTGCTCGGGAAGACATATCAACGACTTTGAACTCGAAACACAGTGATCACTTGGGACATTATAAATACGACCTCACTCTTTCCTCTGCACTTCCACAGCTAAAACAACAGAGTCTATTTATGATGATGAGCAACGGCCGCATTACACTTCCTAAGGGTTTTCGATTCCAGCCCTCCGACGAGGAGCTGCTGAGTCATTACTTGGAGAAGAAGAATCAGCGCAAGGATCCCCAAATCAAGGCCATCATCCCTGAGATCGATGTGTGCAAGCACGAGCCCCGCGACTTACCAGCACTGGTCTTCACAAGGGCGGAATTTCTGGAGAGTGAGTGGTTCACCATGGCTGACTCTCCGGACATGCAGTGGTACTTCTTCAGTCCGAGAGTTTTTAAACACAGCAAATGCAAAAGCACTCGGTCCAACAGGACCACAGAGGAAGGCTCCTGGAAGAAGCAAGGCAGGGACCGGAGAATCACTCGGACACGTTCTGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCAAACTGGAGTGCAGAAAAAACAGAAGACTGACTGGGTTATTCATGAGTATTATCTCACTAAGGCCGATTCTGATGAGCAGATCGGGGACTTTGTTCTCTGCCGCTTGAAGAAAAAGTTAGATAAGTCTGATCATGATGAGCAGGATGGTCCATTCTGCGGTGGAGGAGAACCTAGTAGCGGTAGCTGCAGTATGGCCTTCAATGTTGAAAATCAAGCATCCAAACAGCAGGGAAATGTTCTTTCGATTTCTGTTGAAGGTCAACCTGATAGCTGCAATTCATCTGATTCTGATATGGTTGAAGAGCTACTTGATGAGCCAGGAAATCTGGACTCACTCTTTAATCAACCTCCGCCACCTCAACTGCAGTCACCAATAAAGCTGGGCAATGTTTCACACACCACCAATGTCCATATTGATGAATGTCGTAAGAGGAAATATCAATTTAGGGATAATGACGCTTCTCCTACTAAAAAGAATCATATTTCAACAATTGATGTTGATGAACTAGTTAGCAACACTACATCTAATTCTGAAAATCATGCTGCAGATGCGATTCCAAAGGAGTATTCTCAACCAGAAGAAAATCTGGGATCTGATTCATTTCATCACAGTTTTTCTGCATTCTTGAACTGGGGGCTTTGGAGACTTCTTAAAGCAAGTCCACCGAGGGCAGTTGGCTCGGTTGTCACATGGATCTTGCCCCAAAAGGGGGAGAATTTTCAAAAACCAAGTTCCGCCAAGGGTGGGAAGCCCGGTCTCTTTGAGACCTGGGACAAACACTGGGTTGATCTGCCCCAAAAGAGGGGAGAATTTTCAAAAACCAAGTTCCACCAAGGGTGGGAAGCCCAGTCTCTTTTAGACCTGGGACAAACACTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

482

Amino Acids

54.68

Weight (kDa)

6.51

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 62 - 205 2.6e-31 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AccII CGCG 1 cut(s) 315
AccIII TCCGGA 1 cut(s) 385
AciI CCGC 8 cut(s) 172, 313, 344, 664, 720, 741, 914, 1299
AclWI GGATC 5 cut(s) 254, 267, 554, 1162, 1265
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 3 cut(s) 347, 1279, 1373
AcuI CTGAAG 1 cut(s) 391
AfaI GTAC 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 515
AhlI ACTAGT 1 cut(s) 1069
AjnI CCWGG 4 cut(s) 476, 880, 1331, 1425
AjuI GAANNNNNNNTTGG 2 cut(s) 1114, 1146
AluBI AGCT 7 cut(s) 29, 133, 220, 747, 834, 868, 943
AluI AGCT 7 cut(s) 29, 133, 220, 747, 834, 868, 943
Alw26I GTCTC 4 cut(s) 1201, 1322, 1325, 1419
AlwI GGATC 5 cut(s) 254, 267, 554, 1162, 1265
Ama87I CYCGRG 1 cut(s) 39
Aor13HI TCCGGA 1 cut(s) 385
AoxI GGCC 4 cut(s) 169, 273, 624, 756
ApeKI GCWGC 4 cut(s) 220, 747, 834, 1106
ApoI RAATTY 3 cut(s) 347, 1279, 1373
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 4 cut(s) 450, 459, 496, 710
AsuC2I CCSGG 1 cut(s) 1317
AsuHPI GGTGA 2 cut(s) 361, 924
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 4 cut(s) 450, 459, 496, 710
AxyI CCTNAGG 1 cut(s) 186
BamHI GGATCC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 312
BauI CACGAG 1 cut(s) 305
BbsI GAAGAC 3 cut(s) 51, 325, 593
BbvI GCAGC 4 cut(s) 207, 734, 821, 1093
BccI CCATC 3 cut(s) 25, 284, 701
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 1224, 1258
BciT130I CCWGG 4 cut(s) 478, 882, 1333, 1427
BclI TGATCA 2 cut(s) 79, 691
BcnI CCSGG 1 cut(s) 1317
BcoDI GTCTC 4 cut(s) 1201, 1322, 1325, 1419
BcuI ACTAGT 1 cut(s) 1069
BfaI CTAG 2 cut(s) 735, 1070
BfmI CTRYAG 3 cut(s) 748, 926, 1107
BisI GCNGC 6 cut(s) 172, 221, 664, 748, 835, 1107
BlsI GCNGC 6 cut(s) 173, 222, 665, 749, 836, 1108
Bme1390I CCNGG 5 cut(s) 478, 882, 1317, 1333, 1427
Bme18I GGWCC 4 cut(s) 450, 459, 496, 710
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 4 cut(s) 450, 459, 496, 710
BmiI GGNNCC 3 cut(s) 261, 475, 497
BmrFI CCNGG 5 cut(s) 478, 882, 1317, 1333, 1427
BmrI ACTGGG 4 cut(s) 604, 1204, 1354, 1405
BmsI GCATC 2 cut(s) 788, 1102
BmuI ACTGGG 4 cut(s) 604, 1204, 1354, 1405
BpiI GAAGAC 3 cut(s) 51, 325, 593
BplI GAGNNNNNCTC 4 cut(s) 458, 490, 493, 525
BpmI CTGGAG 2 cut(s) 374, 588
BpuMI CCSGG 1 cut(s) 1317
Bsa29I ATCGAT 1 cut(s) 291
BsaI GGTCTC 2 cut(s) 1322, 1325
BsaJI CCNNGG 6 cut(s) 372, 1229, 1302, 1332, 1396, 1426
BsaWI WCCGGW 2 cut(s) 385, 498
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bse1I ACTGG 7 cut(s) 333, 571, 599, 1199, 1349, 1411, 1443
Bse21I CCTNAGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 955
BseAI TCCGGA 1 cut(s) 385
BseBI CCWGG 4 cut(s) 478, 882, 1333, 1427
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 6 cut(s) 372, 1229, 1302, 1332, 1396, 1426
BseGI GGATG 4 cut(s) 17, 279, 712, 779
BseMI GCAATG 1 cut(s) 955
BseMII CTCAG 3 cut(s) 39, 215, 276
BseNI ACTGG 7 cut(s) 333, 571, 599, 1199, 1349, 1411, 1443
BseRI GAGGAG 2 cut(s) 230, 741
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 4 cut(s) 207, 734, 821, 1093
BseYI CCCAGC 1 cut(s) 943
BsgI GTGCAG 2 cut(s) 105, 593
Bsh1236I CGCG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 4 cut(s) 171, 275, 626, 758
BshVI ATCGAT 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 3 cut(s) 386, 499, 1317
BslFI GGGAC 4 cut(s) 102, 509, 662, 1349
BsmAI GTCTC 4 cut(s) 1201, 1322, 1325, 1419
BsmFI GGGAC 4 cut(s) 102, 509, 662, 1349
BsmI GAATGC 1 cut(s) 1184
BsnI GGCC 4 cut(s) 171, 275, 626, 758
Bso31I GGTCTC 2 cut(s) 1322, 1325
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 312
Bsp13I TCCGGA 1 cut(s) 385
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 8 cut(s) 172, 313, 344, 664, 720, 741, 914, 1299
BspANI GGCC 4 cut(s) 171, 275, 626, 758
BspCNI CTCAG 3 cut(s) 38, 216, 277
BspDI ATCGAT 1 cut(s) 291
BspEI TCCGGA 1 cut(s) 385
BspFNI CGCG 1 cut(s) 315
BspHI TCATGA 2 cut(s) 604, 694
BspLI GGNNCC 3 cut(s) 261, 475, 497
BspMAI CTGCAG 3 cut(s) 752, 930, 1111
BspPI GGATC 5 cut(s) 254, 267, 554, 1162, 1265
BspQI GCTCTTC 1 cut(s) 858
BspTNI GGTCTC 2 cut(s) 1322, 1325
BsrDI GCAATG 1 cut(s) 955
BsrI ACTGG 7 cut(s) 333, 571, 599, 1199, 1349, 1411, 1443
BssECI CCNNGG 6 cut(s) 372, 1229, 1302, 1332, 1396, 1426
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 3 cut(s) 372, 1302, 1396
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 4 cut(s) 478, 882, 1333, 1427
Bst4CI ACNGT 2 cut(s) 77, 1175
Bst6I CTCTTC 2 cut(s) 536, 858
BstC8I GCNNGC 2 cut(s) 9, 302
BstDEI CTNAG 5 cut(s) 25, 186, 224, 285, 621
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 4 cut(s) 17, 279, 712, 779
BstFNI CGCG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 255
BstMAI GTCTC 4 cut(s) 1201, 1322, 1325, 1419
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 4 cut(s) 35, 171, 747, 1112
BstNI CCWGG 4 cut(s) 478, 882, 1333, 1427
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 5 cut(s) 476, 880, 1315, 1331, 1425
BstSFI CTRYAG 3 cut(s) 748, 926, 1107
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 4 cut(s) 207, 734, 821, 1093
BstV2I GAAGAC 3 cut(s) 51, 325, 593
BstX2I RGATCY 4 cut(s) 259, 546, 1154, 1257
BstYI RGATCY 4 cut(s) 259, 546, 1154, 1257
BstZI CGGCCG 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 186
BsuRI GGCC 4 cut(s) 171, 275, 626, 758
BsuTUI ATCGAT 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 4 cut(s) 17, 279, 712, 779
BtsI GCAGTG 1 cut(s) 401
BtsIMutI CAGTG 5 cut(s) 82, 326, 401, 1342, 1436
Cac8I GCNNGC 2 cut(s) 9, 302
CciI TCATGA 2 cut(s) 604, 694
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 4 cut(s) 450, 459, 496, 710
ClaI ATCGAT 1 cut(s) 291
CseI GACGC 1 cut(s) 1028
Csp6I GTAC 1 cut(s) 400
CviAII CATG 6 cut(s) 373, 391, 605, 695, 1103, 1254
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 5 cut(s) 25, 186, 224, 285, 621
DraI TTTAAA 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 169
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 536, 858
EarI CTCTTC 2 cut(s) 536, 858
EciI GGCGGA 3 cut(s) 359, 903, 1288
EclXI CGGCCG 1 cut(s) 169
Eco130I CCWWGG 3 cut(s) 372, 1302, 1396
Eco24I GRGCYC 1 cut(s) 312
Eco31I GGTCTC 2 cut(s) 1322, 1325
Eco47I GGWCC 4 cut(s) 450, 459, 496, 710
Eco52I CGGCCG 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 391
Eco81I CCTNAGG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 39
EcoRII CCWGG 4 cut(s) 476, 880, 1331, 1425
EcoT14I CCWWGG 3 cut(s) 372, 1302, 1396
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 3 cut(s) 372, 1302, 1396
FaeI CATG 6 cut(s) 376, 394, 608, 698, 1106, 1257
FalI AAGNNNNNCTT 4 cut(s) 533, 565, 855, 887
FaqI GGGAC 4 cut(s) 102, 509, 662, 1349
FatI CATG 6 cut(s) 372, 390, 604, 694, 1102, 1253
FauI CCCGC 1 cut(s) 320
FbaI TGATCA 2 cut(s) 79, 691
Fnu4HI GCNGC 6 cut(s) 172, 221, 664, 748, 835, 1107
FokI GGATG 4 cut(s) 4, 266, 719, 766
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 6 cut(s) 172, 221, 664, 748, 835, 1107
FspBI CTAG 2 cut(s) 735, 1070
GlaI GCGC 1 cut(s) 254
GluI GCNGC 6 cut(s) 172, 221, 664, 748, 835, 1107
GsaI CCCAGC 1 cut(s) 947
GsuI CTGGAG 2 cut(s) 374, 588
HaeIII GGCC 4 cut(s) 171, 275, 626, 758
HapII CCGG 3 cut(s) 386, 499, 1317
HgaI GACGC 1 cut(s) 1028
HhaI GCGC 1 cut(s) 255
Hin1II CATG 6 cut(s) 376, 394, 608, 698, 1106, 1257
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HincII GTYRAC 1 cut(s) 824
HindII GTYRAC 1 cut(s) 824
HpaII CCGG 3 cut(s) 386, 499, 1317
HphI GGTGA 2 cut(s) 361, 924
Hpy166II GTNNAC 3 cut(s) 369, 824, 1226
Hpy188III TCNNGA 8 cut(s) 41, 353, 386, 550, 605, 695, 890, 1189
Hpy8I GTNNAC 3 cut(s) 369, 824, 1226
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 4 cut(s) 464, 565, 769, 812
HpyCH4III ACNGT 2 cut(s) 77, 1175
HpyCH4IV ACGT 1 cut(s) 517
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 171, 747, 1112
HpyF3I CTNAG 5 cut(s) 25, 186, 224, 285, 621
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 6 cut(s) 376, 394, 608, 698, 1106, 1257
HspAI GCGC 1 cut(s) 253
Kpn2I TCCGGA 1 cut(s) 385
Ksp22I TGATCA 2 cut(s) 79, 691
LguI GCTCTTC 1 cut(s) 858
LmnI GCTCC 2 cut(s) 217, 479
Lsp1109I GCAGC 4 cut(s) 207, 734, 821, 1093
LweI GCATC 2 cut(s) 788, 1102
MaeI CTAG 2 cut(s) 735, 1070
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 2 cut(s) 930, 1249
MfeI CAATTG 1 cut(s) 1053
MflI RGATCY 4 cut(s) 259, 546, 1154, 1257
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 7 cut(s) 347, 838, 1004, 1053, 1090, 1279, 1373
MlyI GAGTC 4 cut(s) 154, 235, 374, 887
MmeI TCCRAC 2 cut(s) 234, 477
MroI TCCGGA 1 cut(s) 385
MseI TTAA 3 cut(s) 423, 903, 1215
MslI CAYNNNNRTG 1 cut(s) 978
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 3 cut(s) 386, 499, 1317
MspR9I CCNGG 5 cut(s) 478, 882, 1317, 1333, 1427
MunI CAATTG 1 cut(s) 1053
Mva1269I GAATGC 1 cut(s) 1184
MvaI CCWGG 4 cut(s) 478, 882, 1333, 1427
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 4 cut(s) 35, 171, 747, 1112
NciI CCSGG 1 cut(s) 1317
NcoI CCATGG 1 cut(s) 372
NlaIII CATG 6 cut(s) 376, 394, 608, 698, 1106, 1257
NlaIV GGNNCC 3 cut(s) 261, 475, 497
NmuCI GTSAC 2 cut(s) 930, 1249
NspI RCATGY 1 cut(s) 394
PagI TCATGA 2 cut(s) 604, 694
PciSI GCTCTTC 1 cut(s) 858
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 1 cut(s) 1184
PfeI GAWTC 8 cut(s) 198, 247, 504, 629, 848, 1039, 1117, 1160
PfoI TCCNGGA 1 cut(s) 476
PkrI GCNGC 6 cut(s) 173, 222, 665, 749, 836, 1108
PleI GAGTC 4 cut(s) 153, 234, 374, 887
PpsI GAGTC 4 cut(s) 153, 234, 374, 887
PsiI TTATAA 1 cut(s) 96
Psp6I CCWGG 4 cut(s) 476, 880, 1331, 1425
PspFI CCCAGC 1 cut(s) 943
PspGI CCWGG 4 cut(s) 476, 880, 1331, 1425
PspN4I GGNNCC 3 cut(s) 261, 475, 497
PspPI GGNCC 4 cut(s) 450, 459, 496, 710
PstI CTGCAG 3 cut(s) 752, 930, 1111
PsuI RGATCY 4 cut(s) 259, 546, 1154, 1257
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 978
SapI GCTCTTC 1 cut(s) 858
SaqAI TTAA 3 cut(s) 423, 903, 1215
SatI GCNGC 6 cut(s) 172, 221, 664, 748, 835, 1107
Sau96I GGNCC 4 cut(s) 450, 459, 496, 710
SchI GAGTC 4 cut(s) 154, 235, 374, 887
ScrFI CCNGG 5 cut(s) 478, 882, 1317, 1333, 1427
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 2 cut(s) 788, 1102
SfcI CTRYAG 3 cut(s) 748, 926, 1107
SinI GGWCC 4 cut(s) 450, 459, 496, 710
SmiMI CAYNNNNRTG 1 cut(s) 978
SpeI ACTAGT 1 cut(s) 1069
Sse9I AATT 7 cut(s) 347, 838, 1004, 1053, 1090, 1279, 1373
SsiI CCGC 8 cut(s) 172, 313, 344, 664, 720, 741, 914, 1299
SspMI CTAG 2 cut(s) 735, 1070
StyD4I CCNGG 5 cut(s) 476, 880, 1315, 1331, 1425
StyI CCWWGG 3 cut(s) 372, 1302, 1396
TaaI ACNGT 2 cut(s) 77, 1175
TaiI ACGT 1 cut(s) 520
TaqI TCGA 4 cut(s) 68, 196, 291, 806
TaqII GACCGA 1 cut(s) 438
TasI AATT 7 cut(s) 347, 838, 1004, 1053, 1090, 1279, 1373
TauI GCSGC 2 cut(s) 174, 666
TfiI GAWTC 8 cut(s) 198, 247, 504, 629, 848, 1039, 1117, 1160
Tru1I TTAA 3 cut(s) 423, 903, 1215
Tru9I TTAA 3 cut(s) 423, 903, 1215
TscAI CASTG 5 cut(s) 82, 333, 401, 1349, 1443
TseFI GTSAC 2 cut(s) 930, 1249
TseI GCWGC 4 cut(s) 220, 747, 834, 1106
Tsp45I GTSAC 2 cut(s) 930, 1249
TspDTI ATGAA 6 cut(s) 593, 831, 996, 1080, 1152, 1157
TspRI CASTG 5 cut(s) 82, 333, 401, 1349, 1443
VpaK11BI GGWCC 4 cut(s) 450, 459, 496, 710
XapI RAATTY 3 cut(s) 347, 1279, 1373
XceI RCATGY 1 cut(s) 394
XspI CTAG 2 cut(s) 735, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.