Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002549

Physical Location & Seq

Genomic Coordinates Reverse (-)

40449491 .. 40450629

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0289400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTCATAAATGTGCCTAGTATTTCCAGGCTGCAATGGCATCCTTACACTGTTACTTCAAACAGTAACTTGGAGCCAGAGAAGATCAGTGTCGTCATTAAAGGTGAAGGAAGTTGGACCAGGAAGCTTTACCAAGTCCTTTCGTCGCCTTCTACAAGTGCTCGGATTGAGGCTGCTGTTGAAGGACCTTATGGACCTGATGCAACTCATTTTCTGAGGCATGACAATCTTGTGTTGGTGAGTGGAGGCAGTGGCATTACCCCTTTCATATCCATAATTCGCGAGCTTATTTTTATGTCCACGGCCTTCCAATCCAAGCTTCCGGAAGTGACTTTAATCTGTGCATTTAAACACTCTTCGGACCTCACAATGCTAGACCTGATTCTACCAATGTCTACCACCACACCATATGACATTTCCAATCTCCTGATTCAAGTATCGACAGTGGCATCGGAGAGCTGTTTTAGCACAGGGAAAAGGGTTATTGATCCCTACCGGAGTTCATTGACTCCAAAGTCTGTTGAAGCATTGATATGCTTGCAGAATTGGATCAAGGAGGAAGATGCATCTTCGATTGAATATTATCCGTCAATTGAAGAAATGGAATTTTATGAGCAAGCTGAGATAGAATTTGTAGACAAACAAAGTGGAGACAAGGCTGCAAAGGCTTCAAAAAAAAAAATGCAAGAAAACTGCTGTGGCAGACCAAGGGAACAATCCTTCTGTCCAAGCTCATTAAGGCTATATGCATCTTTCAATCATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

255

Amino Acids

28.51

Weight (kDa)

5.61

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_8	PF08022	1 - 67	2.9e-16	FAD-binding domain
NAD_binding_6	PF08030	74 - 135	4.9e-12	Ferric reductase NAD binding domain
Dimer_Tnp_hAT	PF05699	142 - 184	2.7e-13	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g17950 FvH4_7g17950 FvH4_7g17950 FvH4_7g18000 FvH4_7g18000 FvH4_7g18210 FvH4_7g18210 FvH4_7g18260 FvH4_7g18260
rosa_chinensis	RchiOBHm_Chr1g0333721 RchiOBHm_Chr1g0361391 RchiOBHm_Chr1g0361441 RchiOBHm_Chr1g0361471 RchiOBHm_Chr1g0361531
rosa_laevigata	RLG00000014879 RLG00000027718 RLG00000027720 RLG00000029533
rosa_multiflora	Rmu_sc0002119.1_g000005 Rmu_sc0002119.1_g000006 Rmu_sc0002119.1_g000022 Rmu_sc0003693.1_g000011 Rmu_sc0006417.1_g000010 Rmu_sc0010384.1_g000005 Rmu_sc0042164.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294940 Rroxscaffold_4G00294980 Rroxscaffold_4G00294990
rosa_rugosa	Rorug01G0111500 Rorug01G0289400 Rorug01G0289500 Rorug01G0289600 Rorug01G0289600 Rorug01G0289700 Rorug01G0289900
rosa_samantha	Rh1AG133600 Rh1AG300200
rosa_wichuraiana	Rw1G011160 Rw1G026560 Rw1G026600 Rw1G026620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	514
AccI	GTMKAC	2 cut(s)	395, 636
AccII	CGCG	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	322
AclWI	GGATC	2 cut(s)	482, 557
AcsI	RAATTY	2 cut(s)	605, 629
AgsI	TTSAA	8 cut(s)	60, 182, 434, 524, 578, 596, 672, 757
AjnI	CCWGG	2 cut(s)	26, 119
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AluBI	AGCT	6 cut(s)	127, 286, 319, 459, 620, 732
AluI	AGCT	6 cut(s)	127, 286, 319, 459, 620, 732
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	645
AlwI	GGATC	2 cut(s)	482, 557
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	3 cut(s)	31, 173, 659
ApoI	RAATTY	2 cut(s)	605, 629
AspS9I	GGNCC	4 cut(s)	117, 185, 194, 361
AsuHPI	GGTGA	2 cut(s)	116, 250
AvaII	GGWCC	4 cut(s)	117, 185, 194, 361
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	18, 160, 646
BceAI	ACGGC	1 cut(s)	318
BciT130I	CCWGG	2 cut(s)	28, 121
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	3 cut(s)	18, 374, 766
BisI	GCNGC	3 cut(s)	32, 174, 660
BlsI	GCNGC	3 cut(s)	33, 175, 661
Bme1390I	CCNGG	2 cut(s)	28, 121
Bme18I	GGWCC	4 cut(s)	117, 185, 194, 361
BmgT120I	GGNCC	4 cut(s)	117, 185, 194, 361
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	28, 121
BmsI	GCATC	6 cut(s)	49, 190, 458, 553, 575, 758
BsaJI	CCNNGG	2 cut(s)	300, 707
BsaWI	WCCGGW	2 cut(s)	322, 495
Bse3DI	GCAATG	2 cut(s)	41, 760
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	28, 121
BseDI	CCNNGG	2 cut(s)	300, 707
BseGI	GGATG	1 cut(s)	40
BseMI	GCAATG	2 cut(s)	41, 760
BseMII	CTCAG	2 cut(s)	206, 612
BseXI	GCAGC	3 cut(s)	18, 160, 646
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	323, 496
BsmAI	GTCTC	1 cut(s)	645
BsnI	GGCC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	3 cut(s)	84, 487, 549
Bsp68I	TCGCGA	1 cut(s)	282
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	2 cut(s)	207, 613
BspEI	TCCGGA	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	482, 557
BsrDI	GCAATG	2 cut(s)	41, 760
BssECI	CCNNGG	2 cut(s)	300, 707
BssMI	GATC	3 cut(s)	84, 487, 549
BssT1I	CCWWGG	1 cut(s)	707
Bst2UI	CCWGG	2 cut(s)	28, 121
Bst4CI	ACNGT	3 cut(s)	52, 65, 445
Bst6I	CTCTTC	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	284, 539, 618
BstDEI	CTNAG	2 cut(s)	215, 621
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	87, 490, 552
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	3 cut(s)	84, 487, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 465, 665
BstNI	CCWGG	2 cut(s)	28, 121
BstSCI	CCNGG	2 cut(s)	26, 119
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	18, 160, 646
BsuRI	GGCC	1 cut(s)	305
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	4 cut(s)	48, 94, 256, 450
BtuMI	TCGCGA	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	284, 539, 618
Cfr13I	GGNCC	4 cut(s)	117, 185, 194, 361
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	215, 621
DpnI	GATC	3 cut(s)	86, 489, 551
DpnII	GATC	3 cut(s)	84, 487, 549
DraI	TTTAAA	1 cut(s)	349
DrdI	GACNNNNNNGTC	1 cut(s)	514
DseDI	GACNNNNNNGTC	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	707
Eco47I	GGWCC	4 cut(s)	117, 185, 194, 361
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	26, 119
EcoT14I	CCWWGG	1 cut(s)	707
EcoT22I	ATGCAT	2 cut(s)	568, 751
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	1 cut(s)	224
FatI	CATG	1 cut(s)	220
FauNDI	CATATG	1 cut(s)	409
FblI	GTMKAC	2 cut(s)	395, 636
Fnu4HI	GCNGC	3 cut(s)	32, 174, 660
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	32, 174, 660
FspBI	CTAG	3 cut(s)	18, 374, 766
GluI	GCNGC	3 cut(s)	32, 174, 660
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	2 cut(s)	323, 496
Hin1II	CATG	1 cut(s)	224
HindIII	AAGCTT	2 cut(s)	125, 317
HinfI	GANTC	3 cut(s)	382, 430, 508
HpaII	CCGG	2 cut(s)	323, 496
HphI	GGTGA	2 cut(s)	116, 250
Hpy166II	GTNNAC	3 cut(s)	300, 396, 637
Hpy188I	TCNGA	4 cut(s)	165, 216, 361, 454
Hpy188III	TCNNGA	3 cut(s)	281, 323, 427
Hpy8I	GTNNAC	3 cut(s)	300, 396, 637
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	5 cut(s)	101, 159, 176, 316, 730
HpyCH4III	ACNGT	3 cut(s)	52, 65, 445
HpyCH4V	TGCA	8 cut(s)	34, 203, 344, 541, 566, 662, 685, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 465, 665
HpyF3I	CTNAG	2 cut(s)	215, 621
Hsp92II	CATG	1 cut(s)	224
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	84, 487, 549
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	3 cut(s)	18, 160, 646
LweI	GCATC	6 cut(s)	49, 190, 458, 553, 575, 758
MaeI	CTAG	3 cut(s)	18, 374, 766
MaeIII	GTNAC	3 cut(s)	52, 65, 328
MalI	GATC	3 cut(s)	86, 489, 551
MboI	GATC	3 cut(s)	84, 487, 549
MboII	GAAGA	5 cut(s)	94, 348, 561, 572, 608
MfeI	CAATTG	1 cut(s)	591
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	5 cut(s)	276, 544, 591, 605, 629
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	5 cut(s)	163, 210, 239, 374, 550
Mph1103I	ATGCAT	2 cut(s)	568, 751
MroI	TCCGGA	1 cut(s)	322
MseI	TTAA	4 cut(s)	99, 335, 348, 737
MslI	CAYNNNNRTG	2 cut(s)	11, 532
MspI	CCGG	2 cut(s)	323, 496
MspR9I	CCNGG	2 cut(s)	28, 121
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	2 cut(s)	28, 121
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	37, 465, 665
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	3 cut(s)	84, 487, 549
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	328
NruI	TCGCGA	1 cut(s)	282
NsiI	ATGCAT	2 cut(s)	568, 751
PfeI	GAWTC	2 cut(s)	382, 430
PkrI	GCNGC	3 cut(s)	33, 175, 661
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	26, 119
PspGI	CCWGG	2 cut(s)	26, 119
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	4 cut(s)	117, 185, 194, 361
PspPPI	RGGWCCY	1 cut(s)	185
RruI	TCGCGA	1 cut(s)	282
RseI	CAYNNNNRTG	2 cut(s)	11, 532
SaqAI	TTAA	4 cut(s)	99, 335, 348, 737
SatI	GCNGC	3 cut(s)	32, 174, 660
Sau3AI	GATC	3 cut(s)	84, 487, 549
Sau96I	GGNCC	4 cut(s)	117, 185, 194, 361
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	28, 121
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	6 cut(s)	49, 190, 458, 553, 575, 758
SinI	GGWCC	4 cut(s)	117, 185, 194, 361
SmiMI	CAYNNNNRTG	2 cut(s)	11, 532
Sse9I	AATT	5 cut(s)	276, 544, 591, 605, 629
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	3 cut(s)	18, 374, 766
StyD4I	CCNGG	2 cut(s)	26, 119
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	3 cut(s)	52, 65, 445
TaqI	TCGA	2 cut(s)	440, 572
TasI	AATT	5 cut(s)	276, 544, 591, 605, 629
TfiI	GAWTC	2 cut(s)	382, 430
Tru1I	TTAA	4 cut(s)	99, 335, 348, 737
Tru9I	TTAA	4 cut(s)	99, 335, 348, 737
TscAI	CASTG	4 cut(s)	55, 94, 256, 450
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	3 cut(s)	31, 173, 659
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	256, 492
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	4 cut(s)	55, 94, 256, 450
VpaK11BI	GGWCC	4 cut(s)	117, 185, 194, 361
XapI	RAATTY	2 cut(s)	605, 629
XmiI	GTMKAC	2 cut(s)	395, 636
XspI	CTAG	3 cut(s)	18, 374, 766
Zsp2I	ATGCAT	2 cut(s)	568, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.