Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010384.1

Orthogroup ID

OG0002549

Physical Location & Seq

Genomic Coordinates Forward (+)

17482 .. 19145

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010384.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgatgatgagcagcggccgcatcacacttcctaagggtttccgattccagccctccgatgaggagctgctgagtcattacttggagaagaagaatcagcgcaaggatcccgaagtggaggccatcatccctgaaatcaatgtgtgcgagtacgagcctcgcgacttaccatccctggtgttcagaagggcggtatttctggacagggagtggttcaccatggcggactctccggacatggagtggtacttcttcagtccgcgagtttttaaacacagcaaaagcaaaagcactcgatccaacaggaccacggaggaaggctactggaagaagcaaggcaaggaccgcagaatcatgactcgggcacgttctgataagcagatcggggggaagaggatcttgaccttctaccaaactgatggagtgcaaaaaaaacagaagactgactgggttattcatgagtattatctcactaagaccgattctaatgagcagatcggggactttgttctctgccgcttgaagaaaaagtccgacaagtctgatcatgatgagcaggaaggtccatgctacagtatggccttcattaatgttgaaaatcaagcatccaaagagctgggaaatgttctttcgatttctgttgaaggtcaacctgatagcggcaattcatctgattccaatatggttgaagagctacttgatgagccaggaaatcaacctccgccacctcaactacagtcaccaataaagctgggtaatgtttcacacaccaccaatgtccatattgatgaatgtcgtaagaggaaatatcaatttgcggataatgactcttctgagtcttctcctaccaaaaataatcatatttcaaccaatgatgttgatgaactagttagcaacacttcatcttattctgaaagtcatgctgcagatgctattccaaaggagtattctcaaccaggagaaaatctgggatctgatttatttcagtcactggaaccactatcagtaaacagagaaccgagagatttttcccatcacaataattttattggatgggatgatttgccatatttaattgaaggtattgactcttctctcgaaaagttctcagatacaaatattgatggaggtagcagtgacagaaacaccgaagtcgtctatggatcggtaaacaattattctacatttagtggcggatccacgatacaaaaatggggtgggctaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

409

Amino Acids

46.59

Weight (kDa)

5.18

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g17950 FvH4_7g17950 FvH4_7g17950 FvH4_7g18000 FvH4_7g18000 FvH4_7g18210 FvH4_7g18210 FvH4_7g18260 FvH4_7g18260
rosa_chinensis	RchiOBHm_Chr1g0333721 RchiOBHm_Chr1g0361391 RchiOBHm_Chr1g0361441 RchiOBHm_Chr1g0361471 RchiOBHm_Chr1g0361531
rosa_laevigata	RLG00000014879 RLG00000027718 RLG00000027720 RLG00000029533
rosa_multiflora	Rmu_sc0002119.1_g000005 Rmu_sc0002119.1_g000006 Rmu_sc0002119.1_g000022 Rmu_sc0003693.1_g000011 Rmu_sc0006417.1_g000010 Rmu_sc0010384.1_g000005 Rmu_sc0042164.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294940 Rroxscaffold_4G00294980 Rroxscaffold_4G00294990
rosa_rugosa	Rorug01G0111500 Rorug01G0289400 Rorug01G0289500 Rorug01G0289600 Rorug01G0289600 Rorug01G0289700 Rorug01G0289900
rosa_samantha	Rh1AG133600 Rh1AG300200
rosa_wichuraiana	Rw1G011160 Rw1G026560 Rw1G026600 Rw1G026620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	162, 262
AccIII	TCCGGA	1 cut(s)	232
AclWI	GGATC	8 cut(s)	101, 114, 291, 404, 979, 1171, 1191, 1204
AcoI	YGGCCR	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	2 cut(s)	152, 248
AfiI	CCNNNNNNNGG	1 cut(s)	659
AgsI	TTSAA	6 cut(s)	523, 596, 644, 689, 867, 1079
AhlI	ACTAGT	1 cut(s)	886
AjnI	CCWGG	3 cut(s)	174, 706, 955
AjuI	GAANNNNNNNTTGG	2 cut(s)	931, 963
AluBI	AGCT	4 cut(s)	67, 616, 694, 751
AluI	AGCT	4 cut(s)	67, 616, 694, 751
AlwI	GGATC	8 cut(s)	101, 114, 291, 404, 979, 1171, 1191, 1204
AlwNI	CAGNNNCTG	1 cut(s)	991
Ama87I	CYCGRG	1 cut(s)	360
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	3 cut(s)	16, 120, 579
ApeKI	GCWGC	3 cut(s)	12, 67, 923
AseI	ATTAAT	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	3 cut(s)	306, 343, 563
AsuHPI	GGTGA	2 cut(s)	208, 732
AvaI	CYCGRG	1 cut(s)	360
AvaII	GGWCC	3 cut(s)	306, 343, 563
AxyI	CCTNAGG	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	367
BamHI	GGATCC	2 cut(s)	106, 1196
BarI	GAAGNNNNNNTAC	2 cut(s)	1075, 1107
BbsI	GAAGAC	2 cut(s)	446, 831
BbvI	GCAGC	3 cut(s)	24, 54, 910
BccI	CCATC	6 cut(s)	131, 178, 413, 1041, 1047, 1118
BciT130I	CCWGG	3 cut(s)	176, 708, 957
BclI	TGATCA	1 cut(s)	544
BcuI	ACTAGT	1 cut(s)	886
BfaI	CTAG	1 cut(s)	887
BfmI	CTRYAG	3 cut(s)	571, 734, 924
BisI	GCNGC	7 cut(s)	13, 16, 19, 68, 517, 661, 924
BlsI	GCNGC	7 cut(s)	14, 17, 20, 69, 518, 662, 925
Bme1390I	CCNGG	3 cut(s)	176, 708, 957
Bme18I	GGWCC	3 cut(s)	306, 343, 563
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	3 cut(s)	306, 343, 563
BmiI	GGNNCC	3 cut(s)	108, 996, 1198
BmrFI	CCNGG	3 cut(s)	176, 708, 957
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	3 cut(s)	30, 614, 919
BmuI	ACTGGG	1 cut(s)	457
BpiI	GAAGAC	2 cut(s)	446, 831
BsaJI	CCNNGG	3 cut(s)	174, 219, 309
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse1I	ACTGG	3 cut(s)	329, 452, 996
Bse21I	CCTNAGG	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	176, 708, 957
BseDI	CCNNGG	3 cut(s)	174, 219, 309
BseGI	GGATG	5 cut(s)	126, 170, 605, 1058, 1063
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMII	CTCAG	3 cut(s)	62, 825, 1122
BseNI	ACTGG	3 cut(s)	329, 452, 996
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	367
BseX3I	CGGCCG	1 cut(s)	16
BseXI	GCAGC	3 cut(s)	24, 54, 910
BseYI	CCCAGC	2 cut(s)	616, 751
Bsh1236I	CGCG	2 cut(s)	162, 262
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	3 cut(s)	18, 122, 581
BsiEI	CGRYCG	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	18, 122, 581
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	9 cut(s)	106, 296, 381, 396, 495, 544, 971, 1163, 1196
Bsp19I	CCATGG	1 cut(s)	219
Bsp68I	TCGCGA	1 cut(s)	162
BspANI	GGCC	3 cut(s)	18, 122, 581
BspCNI	CTCAG	3 cut(s)	63, 826, 1121
BspEI	TCCGGA	1 cut(s)	232
BspFNI	CGCG	2 cut(s)	162, 262
BspHI	TCATGA	3 cut(s)	354, 457, 547
BspLI	GGNNCC	3 cut(s)	108, 996, 1198
BspMAI	CTGCAG	1 cut(s)	928
BspPI	GGATC	8 cut(s)	101, 114, 291, 404, 979, 1171, 1191, 1204
BspQI	GCTCTTC	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	329, 452, 996
BssECI	CCNNGG	3 cut(s)	174, 219, 309
BssMI	GATC	9 cut(s)	106, 296, 381, 396, 495, 544, 971, 1163, 1196
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	3 cut(s)	176, 708, 957
Bst4CI	ACNGT	2 cut(s)	575, 738
Bst6I	CTCTTC	4 cut(s)	386, 684, 835, 1096
BstDEI	CTNAG	5 cut(s)	33, 71, 474, 834, 1108
BstDSI	CCRYGG	2 cut(s)	219, 309
BstF5I	GGATG	5 cut(s)	126, 170, 605, 1058, 1063
BstFNI	CGCG	2 cut(s)	162, 262
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	9 cut(s)	109, 299, 384, 399, 498, 547, 974, 1166, 1199
BstMBI	GATC	9 cut(s)	106, 296, 381, 396, 495, 544, 971, 1163, 1196
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 345, 929
BstNI	CCWGG	3 cut(s)	176, 708, 957
BstSCI	CCNGG	3 cut(s)	174, 706, 955
BstSFI	CTRYAG	3 cut(s)	571, 734, 924
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	2 cut(s)	162, 262
BstV1I	GCAGC	3 cut(s)	24, 54, 910
BstV2I	GAAGAC	2 cut(s)	446, 831
BstX2I	RGATCY	4 cut(s)	106, 396, 971, 1196
BstXI	CCANNNNNNTGG	2 cut(s)	419, 616
BstYI	RGATCY	4 cut(s)	106, 396, 971, 1196
BstZI	CGGCCG	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	33
BsuRI	GGCC	3 cut(s)	18, 122, 581
BtgI	CCRYGG	2 cut(s)	219, 309
BtsCI	GGATG	5 cut(s)	126, 170, 605, 1058, 1063
BtsI	GCAGTG	1 cut(s)	1141
BtsIMutI	CAGTG	2 cut(s)	989, 1141
BtuMI	TCGCGA	1 cut(s)	162
CaiI	CAGNNNCTG	1 cut(s)	991
CciI	TCATGA	3 cut(s)	354, 457, 547
CciNI	GCGGCCGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	3 cut(s)	306, 343, 563
Csp6I	GTAC	2 cut(s)	151, 247
CviAII	CATG	7 cut(s)	220, 238, 355, 458, 548, 567, 920
CviQI	GTAC	2 cut(s)	151, 247
DdeI	CTNAG	5 cut(s)	33, 71, 474, 834, 1108
DpnI	GATC	9 cut(s)	108, 298, 383, 398, 497, 546, 973, 1165, 1198
DpnII	GATC	9 cut(s)	106, 296, 381, 396, 495, 544, 971, 1163, 1196
DraI	TTTAAA	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	16
EagI	CGGCCG	1 cut(s)	16
Eam1104I	CTCTTC	4 cut(s)	386, 684, 835, 1096
EarI	CTCTTC	4 cut(s)	386, 684, 835, 1096
EciI	GGCGGA	3 cut(s)	239, 711, 1209
EclXI	CGGCCG	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	219
Eco47I	GGWCC	3 cut(s)	306, 343, 563
Eco52I	CGGCCG	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	360
EcoRII	CCWGG	3 cut(s)	174, 706, 955
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	7 cut(s)	223, 241, 358, 461, 551, 570, 923
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 681, 713
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	7 cut(s)	219, 237, 354, 457, 547, 566, 919
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	7 cut(s)	13, 16, 19, 68, 517, 661, 924
FokI	GGATG	5 cut(s)	113, 157, 592, 1065, 1070
Fsp4HI	GCNGC	7 cut(s)	13, 16, 19, 68, 517, 661, 924
FspBI	CTAG	1 cut(s)	887
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	7 cut(s)	13, 16, 19, 68, 517, 661, 924
GsaI	CCCAGC	2 cut(s)	620, 755
HaeIII	GGCC	3 cut(s)	18, 122, 581
HapII	CCGG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	7 cut(s)	223, 241, 358, 461, 551, 570, 923
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	650
HindII	GTYRAC	1 cut(s)	650
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	208, 732
Hpy166II	GTNNAC	4 cut(s)	216, 650, 1009, 1171
Hpy188III	TCNNGA	9 cut(s)	110, 161, 200, 233, 355, 400, 458, 548, 1097
Hpy8I	GTNNAC	4 cut(s)	216, 650, 1009, 1171
HpyAV	CCTTC	7 cut(s)	180, 311, 415, 554, 592, 638, 1073
HpyCH4III	ACNGT	2 cut(s)	575, 738
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	2 cut(s)	427, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 345, 929
HpyF3I	CTNAG	5 cut(s)	33, 71, 474, 834, 1108
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	7 cut(s)	223, 241, 358, 461, 551, 570, 923
HspAI	GCGC	1 cut(s)	100
Kpn2I	TCCGGA	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	9 cut(s)	106, 296, 381, 396, 495, 544, 971, 1163, 1196
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	3 cut(s)	24, 54, 910
LweI	GCATC	3 cut(s)	30, 614, 919
MaeI	CTAG	1 cut(s)	887
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	3 cut(s)	738, 987, 1136
MalI	GATC	9 cut(s)	108, 298, 383, 398, 497, 546, 973, 1165, 1198
MboI	GATC	9 cut(s)	106, 296, 381, 396, 495, 544, 971, 1163, 1196
MflI	RGATCY	4 cut(s)	106, 396, 971, 1196
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	5 cut(s)	664, 812, 1042, 1074, 1174
MlyI	GAGTC	6 cut(s)	82, 221, 352, 821, 845, 1082
MmeI	TCCRAC	2 cut(s)	324, 558
MroI	TCCGGA	1 cut(s)	232
MseI	TTAA	3 cut(s)	270, 588, 1073
MslI	CAYNNNNRTG	1 cut(s)	786
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	3 cut(s)	176, 708, 957
MvaI	CCWGG	3 cut(s)	176, 708, 957
MvnI	CGCG	2 cut(s)	162, 262
MwoI	GCNNNNNNNGC	3 cut(s)	18, 345, 929
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	9 cut(s)	106, 296, 381, 396, 495, 544, 971, 1163, 1196
NlaIII	CATG	7 cut(s)	223, 241, 358, 461, 551, 570, 923
NlaIV	GGNNCC	3 cut(s)	108, 996, 1198
NmuCI	GTSAC	3 cut(s)	738, 987, 1136
NotI	GCGGCCGC	1 cut(s)	16
NruI	TCGCGA	1 cut(s)	162
PagI	TCATGA	3 cut(s)	354, 457, 547
PciSI	GCTCTTC	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	5 cut(s)	45, 94, 351, 482, 674
PkrI	GCNGC	7 cut(s)	14, 17, 20, 69, 518, 662, 925
PleI	GAGTC	6 cut(s)	81, 221, 352, 821, 844, 1082
PpsI	GAGTC	6 cut(s)	81, 221, 352, 821, 844, 1082
PshBI	ATTAAT	1 cut(s)	588
Psp6I	CCWGG	3 cut(s)	174, 706, 955
PspFI	CCCAGC	2 cut(s)	616, 751
PspGI	CCWGG	3 cut(s)	174, 706, 955
PspN4I	GGNNCC	3 cut(s)	108, 996, 1198
PspPI	GGNCC	3 cut(s)	306, 343, 563
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	991
PsuI	RGATCY	4 cut(s)	106, 396, 971, 1196
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	2 cut(s)	152, 248
RsaNI	GTAC	2 cut(s)	151, 247
RseI	CAYNNNNRTG	1 cut(s)	786
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	3 cut(s)	270, 588, 1073
SatI	GCNGC	7 cut(s)	13, 16, 19, 68, 517, 661, 924
Sau3AI	GATC	9 cut(s)	106, 296, 381, 396, 495, 544, 971, 1163, 1196
Sau96I	GGNCC	3 cut(s)	306, 343, 563
SchI	GAGTC	6 cut(s)	82, 221, 352, 821, 845, 1082
ScrFI	CCNGG	3 cut(s)	176, 708, 957
SduI	GDGCHC	1 cut(s)	367
SfaNI	GCATC	3 cut(s)	30, 614, 919
SfcI	CTRYAG	3 cut(s)	571, 734, 924
SinI	GGWCC	3 cut(s)	306, 343, 563
SmiMI	CAYNNNNRTG	1 cut(s)	786
SpeI	ACTAGT	1 cut(s)	886
Sse9I	AATT	5 cut(s)	664, 812, 1042, 1074, 1174
SspI	AATATT	1 cut(s)	1120
SspMI	CTAG	1 cut(s)	887
StyD4I	CCNGG	3 cut(s)	174, 706, 955
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	575, 738
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	3 cut(s)	295, 632, 1098
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	5 cut(s)	664, 812, 1042, 1074, 1174
TauI	GCSGC	4 cut(s)	18, 21, 519, 663
TfiI	GAWTC	5 cut(s)	45, 94, 351, 482, 674
Tru1I	TTAA	3 cut(s)	270, 588, 1073
Tru9I	TTAA	3 cut(s)	270, 588, 1073
TscAI	CASTG	2 cut(s)	996, 1141
TseFI	GTSAC	3 cut(s)	738, 987, 1136
TseI	GCWGC	3 cut(s)	12, 67, 923
Tsp45I	GTSAC	3 cut(s)	738, 987, 1136
TspDTI	ATGAA	6 cut(s)	446, 574, 657, 804, 891, 897
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	996, 1141
VpaK11BI	GGWCC	3 cut(s)	306, 343, 563
VspI	ATTAAT	1 cut(s)	588
XspI	CTAG	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.