Rw1G026560
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002549
Physical Location & Seq
Reverse (-)
53710730 .. 53711821
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026560.1

Sequence Viewer

Length: 981 bp
ATGGAGTGGCACTTCTTCAGTCGGCGAGTTTTTAAACACAGCAAAAGCAAAAGCGAAGGCACAGGCAAAAGCAAAGGCACTCAAATCAACAGGGCTACCAAGGAAGGCTCCTGGAAGAAGCAAGGCGATGACAAAAGAATCACTCGGCCCTATTCTGATAAGCAGATCGGGGGGAAAAGGATCTTGACCTTCTACCTGCCGAAGAAACAGAGGACTGACTGGGTTATCCATGAGTATTATCTCACTAAGCCCAATTCTGATGAGCAGATCGGGGACTTTGTTCTCTGCCGCTTGAAGCACAAGTCAGGCAAGTCTGATCATGATCAGCAGGATGATCCACTGTGCGATGGAGGTGAACCTAATAGTGGTAGCTGCAGTATGGTCTCCAACGTTGAAGATCAAGGATCCAAAAAGCTGGGAACTGTTCTTCCGATTCCCAATGGCAATAATGATGAAGCTGAACATGGTGGCGGTAGCTGCAGTACGGCCTTTGATGTTGAAAATCAAGCATCCAAACAGCTGGAAAATGATCTTTCGATTCCCAATGGCAAGGATAATGAAGCTGAACATGGAAGTAGCTGCCCCATCACCTCTGGTTTCGATAATGAAGCTGCAGCAGATGGTTGCTTACAGAAGCAGAAGAATACCTGGCATTCAAGGAGCTGGAAGAATTTTATGGCAATGAGCAAGATGTTAGAGGCTCGCAAACTAATCCCTGTTATATTGATAAGAATGATCTTTCGATCTCTGTCGAAGGTCAACCTGCTGATAGCTGCAATTCATCTGATTCTGATATGGTTAAAGAGTTCCTTGATGAACCAGGACATCTGGCCTTACCCCTTCATCCACCTTCGTTACCTCAACTGCAGTCACCAATATACACAAAGCTGGGCACCACCAATGCCCATAATGATGAATCTCGTAAGAGGAAATATCCATTTGGGGAAAATGACCCTTTCTTACGAAGAAAAATCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

326

Amino Acids

37.01

Weight (kDa)

9.0

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 80 2.5e-11 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 204, 771
AccB1I GGYRCC 1 cut(s) 892
AciI CCGC 2 cut(s) 289, 471
AclI AACGTT 1 cut(s) 390
AclWI GGATC 4 cut(s) 188, 329, 399, 412
AcsI RAATTY 1 cut(s) 670
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 1 cut(s) 365
AgsI TTSAA 4 cut(s) 295, 395, 500, 657
AjnI CCWGG 3 cut(s) 110, 647, 819
AloI GAACNNNNNNTCC 2 cut(s) 412, 444
Alw26I GTCTC 1 cut(s) 388
AlwI GGATC 4 cut(s) 188, 329, 399, 412
AoxI GGCC 3 cut(s) 146, 486, 830
ApeKI GCWGC 6 cut(s) 372, 477, 579, 611, 614, 773
ApoI RAATTY 1 cut(s) 670
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 3 cut(s) 365, 580, 863
BaeGI GKGCMC 1 cut(s) 895
BamHI GGATCC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 892
BbvI GCAGC 6 cut(s) 359, 464, 566, 598, 626, 760
BccI CCATC 3 cut(s) 341, 593, 614
BceAI ACGGC 1 cut(s) 501
BciT130I CCWGG 3 cut(s) 112, 649, 821
BclI TGATCA 2 cut(s) 316, 322
BcoDI GTCTC 1 cut(s) 388
BfmI CTRYAG 4 cut(s) 373, 478, 612, 865
BfuAI ACCTGC 2 cut(s) 204, 771
BisI GCNGC 7 cut(s) 289, 373, 478, 580, 612, 615, 774
BlsI GCNGC 7 cut(s) 290, 374, 479, 581, 613, 616, 775
Bme1390I CCNGG 3 cut(s) 112, 649, 821
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 3 cut(s) 109, 406, 894
BmrFI CCNGG 3 cut(s) 112, 649, 821
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 518
BmuI ACTGGG 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 3 cut(s) 112, 649, 821
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 3 cut(s) 337, 509, 843
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMI GCAATG 1 cut(s) 687
BseNI ACTGG 1 cut(s) 224
BseSI GKGCMC 1 cut(s) 895
BseXI GCAGC 6 cut(s) 359, 464, 566, 598, 626, 760
BseYI CCCAGC 2 cut(s) 415, 888
BshFI GGCC 3 cut(s) 148, 488, 832
BshNI GGYRCC 1 cut(s) 892
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 3 cut(s) 148, 488, 832
Bso31I GGTCTC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 895
BspACI CCGC 2 cut(s) 289, 471
BspANI GGCC 3 cut(s) 148, 488, 832
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 109, 406, 894
BspMAI CTGCAG 4 cut(s) 377, 482, 616, 869
BspMI ACCTGC 2 cut(s) 204, 771
BspPI GGATC 4 cut(s) 188, 329, 399, 412
BspT107I GGYRCC 1 cut(s) 892
BspTNI GGTCTC 1 cut(s) 388
BsrDI GCAATG 1 cut(s) 687
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 3 cut(s) 112, 649, 821
Bst4CI ACNGT 2 cut(s) 342, 424
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 3 cut(s) 337, 509, 843
BstMAI GTCTC 1 cut(s) 388
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstNI CCWGG 3 cut(s) 112, 649, 821
BstSCI CCNGG 3 cut(s) 110, 647, 819
BstSFI CTRYAG 4 cut(s) 373, 478, 612, 865
BstSLI GKGCMC 1 cut(s) 895
BstV1I GCAGC 6 cut(s) 359, 464, 566, 598, 626, 760
BstX2I RGATCY 2 cut(s) 180, 404
BstXI CCANNNNNNTGG 2 cut(s) 415, 520
BstYI RGATCY 2 cut(s) 180, 404
BsuRI GGCC 3 cut(s) 148, 488, 832
BtgZI GCGATG 2 cut(s) 141, 360
BtsCI GGATG 3 cut(s) 337, 509, 843
BtsIMutI CAGTG 1 cut(s) 338
BveI ACCTGC 2 cut(s) 204, 771
Cac8I GCNNGC 1 cut(s) 703
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 483
CviAII CATG 4 cut(s) 230, 320, 464, 569
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 1 cut(s) 246
DraI TTTAAA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 388
EcoRII CCWGG 3 cut(s) 110, 647, 819
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 4 cut(s) 233, 323, 467, 572
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FaqI GGGAC 1 cut(s) 287
FatI CATG 4 cut(s) 229, 319, 463, 568
FbaI TGATCA 2 cut(s) 316, 322
Fnu4HI GCNGC 7 cut(s) 289, 373, 478, 580, 612, 615, 774
FokI GGATG 3 cut(s) 344, 496, 830
Fsp4HI GCNGC 7 cut(s) 289, 373, 478, 580, 612, 615, 774
GluI GCNGC 7 cut(s) 289, 373, 478, 580, 612, 615, 774
GsaI CCCAGC 2 cut(s) 419, 892
HaeIII GGCC 3 cut(s) 148, 488, 832
Hin1II CATG 4 cut(s) 233, 323, 467, 572
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HinfI GANTC 5 cut(s) 138, 433, 538, 787, 916
HphI GGTGA 3 cut(s) 365, 580, 863
Hpy166II GTNNAC 2 cut(s) 356, 760
Hpy188I TCNGA 6 cut(s) 157, 259, 316, 432, 786, 792
Hpy188III TCNNGA 2 cut(s) 184, 320
Hpy8I GTNNAC 2 cut(s) 356, 760
HpyAV CCTTC 6 cut(s) 50, 98, 199, 748, 850, 860
HpyCH4III ACNGT 2 cut(s) 342, 424
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 5 cut(s) 375, 480, 614, 776, 867
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 4 cut(s) 233, 323, 467, 572
Ksp22I TGATCA 2 cut(s) 316, 322
LmnI GCTCC 2 cut(s) 113, 660
Lsp1109I GCAGC 6 cut(s) 359, 464, 566, 598, 626, 760
LweI GCATC 1 cut(s) 518
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 854, 869
MboII GAAGA 8 cut(s) 7, 127, 214, 407, 419, 652, 679, 977
MflI RGATCY 2 cut(s) 180, 404
MhlI GDGCHC 1 cut(s) 895
MluCI AATT 3 cut(s) 253, 670, 777
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 6 cut(s) 204, 344, 601, 691, 869, 920
MseI TTAA 2 cut(s) 33, 800
MslI CAYNNNNRTG 1 cut(s) 911
MspA1I CMGCKG 1 cut(s) 520
MspR9I CCNGG 3 cut(s) 112, 649, 821
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 3 cut(s) 112, 649, 821
MwoI GCNNNNNNNGC 1 cut(s) 477
NlaIII CATG 4 cut(s) 233, 323, 467, 572
NlaIV GGNNCC 3 cut(s) 109, 406, 894
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 869
PagI TCATGA 1 cut(s) 319
PctI GAATGC 1 cut(s) 652
PfeI GAWTC 5 cut(s) 138, 433, 538, 787, 916
PfoI TCCNGGA 1 cut(s) 110
PkrI GCNGC 7 cut(s) 290, 374, 479, 581, 613, 616, 775
Psp1406I AACGTT 1 cut(s) 390
Psp6I CCWGG 3 cut(s) 110, 647, 819
PspFI CCCAGC 2 cut(s) 415, 888
PspGI CCWGG 3 cut(s) 110, 647, 819
PspN4I GGNNCC 3 cut(s) 109, 406, 894
PspPI GGNCC 1 cut(s) 147
PstI CTGCAG 4 cut(s) 377, 482, 616, 869
PsuI RGATCY 2 cut(s) 180, 404
PvuII CAGCTG 1 cut(s) 520
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 911
SaqAI TTAA 2 cut(s) 33, 800
SatI GCNGC 7 cut(s) 289, 373, 478, 580, 612, 615, 774
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 3 cut(s) 112, 649, 821
SduI GDGCHC 1 cut(s) 895
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 4 cut(s) 373, 478, 612, 865
SmiMI CAYNNNNRTG 1 cut(s) 911
Sse9I AATT 3 cut(s) 253, 670, 777
SsiI CCGC 2 cut(s) 289, 471
StyD4I CCNGG 3 cut(s) 110, 647, 819
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 342, 424
TaiI ACGT 1 cut(s) 393
TaqI TCGA 4 cut(s) 536, 600, 742, 752
TasI AATT 3 cut(s) 253, 670, 777
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 5 cut(s) 138, 433, 538, 787, 916
Tru1I TTAA 2 cut(s) 33, 800
Tru9I TTAA 2 cut(s) 33, 800
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 869
TseI GCWGC 6 cut(s) 372, 477, 579, 611, 614, 773
Tsp45I GTSAC 1 cut(s) 869
TspDTI ATGAA 7 cut(s) 468, 573, 621, 770, 830, 832, 929
TspRI CASTG 1 cut(s) 345
XapI RAATTY 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.