RchiOBHm_Chr1g0361441
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002549
Physical Location & Seq
Reverse (-)
53414070 .. 53414994
925 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58631

Sequence Viewer

Length: 648 bp
ATGATGATGAGCAGCGGCTGCATCACACTTCCTAAGGGTCTCCGATTCCTGCCCTCCGACGAGGAGCTGGTGAGTGATTACTTGGAGAAGAAGAATCAGCAGAAGGATCCCGAAATCAAGGCCATCATCTCTGTAATCAATGTGTGCGAGCACGGGCCTAGCGACTTAGCAGCTCTGGTACCAAGGGTGAAATTTCTGGACGGGGAGTGGGAATTCACCATGGCGGACTCTCCGGACATGGAGCTGTACTTCTACAGTCCGCGAGTTTTTAAACACAGCACAAGCAAAAGCACTCGGTCCAACAGGAAAACGGAGGAAGGCTACTGGAAGAAGCAAGGCAAGGACCGCAGAATCACTCGGGCACGTTCTGATGAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCTGCGGGATAAACAGAAGACTGACTGGGTTATCCATGAGTATTATCTCACTAAGGCGAATTCTGATGAGCAGATCGGGGACTTTGTTCTATGCCGCTTGAAGAACAAGTCAGGCAAGTCTGATCATGATCAGCAGGATGATCCACTGTGCGATGGAGGTGAACCTAATAGTGGTAGCTGCAGTATGGTCTCCAATGTTGAAGATCAAGGATCCAAAGAGCTGGGAACTTATGGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

215

Amino Acids

24.51

Weight (kDa)

5.88

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 152 3.5e-28 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
Acc65I GGTACC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 178
AccII CGCG 1 cut(s) 262
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 6 cut(s) 15, 224, 260, 346, 412, 502
AclWI GGATC 6 cut(s) 101, 114, 401, 542, 612, 625
AcsI RAATTY 3 cut(s) 191, 212, 466
AfaI GTAC 2 cut(s) 180, 248
AfiI CCNNNNNNNGG 1 cut(s) 578
AgsI TTSAA 2 cut(s) 508, 608
AluBI AGCT 5 cut(s) 67, 173, 244, 585, 628
AluI AGCT 5 cut(s) 67, 173, 244, 585, 628
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 2 cut(s) 44, 601
AlwI GGATC 6 cut(s) 101, 114, 401, 542, 612, 625
AlwNI CAGNNNCTG 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 357
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 3 cut(s) 120, 155, 640
ApeKI GCWGC 4 cut(s) 12, 18, 170, 585
ApoI RAATTY 3 cut(s) 191, 212, 466
Asp718I GGTACC 1 cut(s) 178
AspS9I GGNCC 3 cut(s) 155, 297, 343
AsuHPI GGTGA 4 cut(s) 82, 199, 208, 578
AvaI CYCGRG 1 cut(s) 357
AvaII GGWCC 2 cut(s) 297, 343
AxyI CCTNAGG 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 364
BamHI GGATCC 2 cut(s) 106, 617
BanI GGYRCC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 5, 24, 182, 572
BccI CCATC 2 cut(s) 131, 554
BclI TGATCA 2 cut(s) 529, 535
BcoDI GTCTC 2 cut(s) 44, 601
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 2 cut(s) 253, 586
BfuAI ACCTGC 1 cut(s) 417
BisI GCNGC 6 cut(s) 13, 16, 19, 171, 502, 586
BlsI GCNGC 6 cut(s) 14, 17, 20, 172, 503, 587
Bme18I GGWCC 2 cut(s) 297, 343
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 3 cut(s) 155, 297, 343
BmiI GGNNCC 3 cut(s) 108, 180, 619
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 534
BsaI GGTCTC 2 cut(s) 44, 601
BsaJI CCNNGG 2 cut(s) 182, 219
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse1I ACTGG 2 cut(s) 329, 437
Bse21I CCTNAGG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 182, 219
BseGI GGATG 1 cut(s) 550
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 1 cut(s) 578
BseNI ACTGG 2 cut(s) 329, 437
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 4 cut(s) 5, 24, 182, 572
BseYI CCCAGC 1 cut(s) 628
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 3 cut(s) 122, 157, 642
BshNI GGYRCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 2 cut(s) 44, 601
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 3 cut(s) 122, 157, 642
Bso31I GGTCTC 2 cut(s) 44, 601
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 2 cut(s) 153, 364
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 9 cut(s) 106, 378, 393, 480, 529, 535, 547, 610, 617
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 6 cut(s) 15, 224, 260, 346, 412, 502
BspANI GGCC 3 cut(s) 122, 157, 642
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 1 cut(s) 262
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 3 cut(s) 108, 180, 619
BspMAI CTGCAG 1 cut(s) 590
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 6 cut(s) 101, 114, 401, 542, 612, 625
BspT107I GGYRCC 1 cut(s) 178
BspTNI GGTCTC 2 cut(s) 44, 601
BsrI ACTGG 2 cut(s) 329, 437
BssECI CCNNGG 2 cut(s) 182, 219
BssMI GATC 9 cut(s) 106, 378, 393, 480, 529, 535, 547, 610, 617
BssT1I CCWWGG 2 cut(s) 182, 219
Bst4CI ACNGT 2 cut(s) 257, 555
Bst6I CTCTTC 1 cut(s) 383
BstAPI GCANNNNNTGC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 33, 166, 459
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 550
BstFNI CGCG 1 cut(s) 262
BstKTI GATC 9 cut(s) 109, 381, 396, 483, 532, 538, 550, 613, 620
BstMAI GTCTC 2 cut(s) 44, 601
BstMBI GATC 9 cut(s) 106, 378, 393, 480, 529, 535, 547, 610, 617
BstMWI GCNNNNNNNGC 2 cut(s) 18, 345
BstSFI CTRYAG 2 cut(s) 253, 586
BstSLI GKGCMC 1 cut(s) 364
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 4 cut(s) 5, 24, 182, 572
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 3 cut(s) 106, 393, 617
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 3 cut(s) 106, 393, 617
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 3 cut(s) 122, 157, 642
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 573
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 551
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 149
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 532
Cfr13I GGNCC 3 cut(s) 155, 297, 343
Csp6I GTAC 2 cut(s) 179, 247
CviAII CATG 4 cut(s) 220, 238, 443, 533
CviQI GTAC 2 cut(s) 179, 247
DdeI CTNAG 3 cut(s) 33, 166, 459
DpnI GATC 9 cut(s) 108, 380, 395, 482, 531, 537, 549, 612, 619
DpnII GATC 9 cut(s) 106, 378, 393, 480, 529, 535, 547, 610, 617
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
EciI GGCGGA 1 cut(s) 239
Eco130I CCWWGG 2 cut(s) 182, 219
Eco31I GGTCTC 2 cut(s) 44, 601
Eco47I GGWCC 2 cut(s) 297, 343
Eco81I CCTNAGG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 357
EcoRI GAATTC 2 cut(s) 212, 466
EcoT14I CCWWGG 2 cut(s) 182, 219
ErhI CCWWGG 2 cut(s) 182, 219
FaeI CATG 4 cut(s) 223, 241, 446, 536
FaiI YATR 7 cut(s) 221, 239, 444, 499, 534, 593, 639
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 1 cut(s) 500
FatI CATG 4 cut(s) 219, 237, 442, 532
FauI CCCGC 1 cut(s) 405
FbaI TGATCA 2 cut(s) 529, 535
Fnu4HI GCNGC 6 cut(s) 13, 16, 19, 171, 502, 586
FokI GGATG 1 cut(s) 557
Fsp4HI GCNGC 6 cut(s) 13, 16, 19, 171, 502, 586
FspBI CTAG 1 cut(s) 159
GluI GCNGC 6 cut(s) 13, 16, 19, 171, 502, 586
GsaI CCCAGC 1 cut(s) 632
HaeIII GGCC 3 cut(s) 122, 157, 642
HapII CCGG 1 cut(s) 233
Hin1II CATG 4 cut(s) 223, 241, 446, 536
HinfI GANTC 4 cut(s) 45, 94, 227, 351
HpaII CCGG 1 cut(s) 233
HphI GGTGA 4 cut(s) 82, 199, 208, 578
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 5 cut(s) 44, 58, 370, 472, 529
Hpy188III TCNNGA 5 cut(s) 110, 197, 233, 397, 533
Hpy8I GTNNAC 1 cut(s) 569
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 97, 311, 412
HpyCH4III ACNGT 2 cut(s) 257, 555
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 21, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 345
HpyF3I CTNAG 3 cut(s) 33, 166, 459
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 4 cut(s) 223, 241, 446, 536
Kpn2I TCCGGA 1 cut(s) 232
KpnI GGTACC 1 cut(s) 182
Ksp22I TGATCA 2 cut(s) 529, 535
Kzo9I GATC 9 cut(s) 106, 378, 393, 480, 529, 535, 547, 610, 617
LmnI GCTCC 2 cut(s) 64, 241
Lsp1109I GCAGC 4 cut(s) 5, 24, 182, 572
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 364
MalI GATC 9 cut(s) 108, 380, 395, 482, 531, 537, 549, 612, 619
MboI GATC 9 cut(s) 106, 378, 393, 480, 529, 535, 547, 610, 617
MboII GAAGA 7 cut(s) 100, 103, 340, 400, 436, 520, 620
MflI RGATCY 3 cut(s) 106, 393, 617
MhlI GDGCHC 2 cut(s) 153, 364
MluCI AATT 3 cut(s) 191, 212, 466
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 2 cut(s) 81, 324
MnlI CCTC 5 cut(s) 55, 64, 307, 384, 557
MroI TCCGGA 1 cut(s) 232
MseI TTAA 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 18, 345
NcoI CCATGG 1 cut(s) 219
NdeII GATC 9 cut(s) 106, 378, 393, 480, 529, 535, 547, 610, 617
NlaIII CATG 4 cut(s) 223, 241, 446, 536
NlaIV GGNNCC 3 cut(s) 108, 180, 619
PagI TCATGA 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 3 cut(s) 45, 94, 351
PkrI GCNGC 6 cut(s) 14, 17, 20, 172, 503, 587
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 628
PspN4I GGNNCC 3 cut(s) 108, 180, 619
PspPI GGNCC 3 cut(s) 155, 297, 343
PstI CTGCAG 1 cut(s) 590
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 3 cut(s) 106, 393, 617
RsaI GTAC 2 cut(s) 180, 248
RsaNI GTAC 2 cut(s) 179, 247
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 6 cut(s) 13, 16, 19, 171, 502, 586
Sau3AI GATC 9 cut(s) 106, 378, 393, 480, 529, 535, 547, 610, 617
Sau96I GGNCC 3 cut(s) 155, 297, 343
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 2 cut(s) 153, 364
SfaNI GCATC 1 cut(s) 30
SfcI CTRYAG 2 cut(s) 253, 586
SinI GGWCC 2 cut(s) 297, 343
Sse9I AATT 3 cut(s) 191, 212, 466
SsiI CCGC 6 cut(s) 15, 224, 260, 346, 412, 502
SspMI CTAG 1 cut(s) 159
StyI CCWWGG 2 cut(s) 182, 219
TaaI ACNGT 2 cut(s) 257, 555
TaiI ACGT 1 cut(s) 367
TaqII GACCGA 1 cut(s) 285
TasI AATT 3 cut(s) 191, 212, 466
TatI WGTACW 1 cut(s) 246
TauI GCSGC 2 cut(s) 18, 504
TfiI GAWTC 3 cut(s) 45, 94, 351
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 558
TseI GCWGC 4 cut(s) 12, 18, 170, 585
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 558
VpaK11BI GGWCC 2 cut(s) 297, 343
XapI RAATTY 3 cut(s) 191, 212, 466
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.