RchiOBHm_Chr1g0333721
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002549
Physical Location & Seq
Reverse (-)
25906826 .. 25909899
3074 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56252

Sequence Viewer

Length: 834 bp
ATGATGATGAGCAGCGGCTGCATTACACTTCCTACGGGTTTCCGATTCCAGCCCTCCGACGAAGAGCTGCTGAGTCATTACTTGGAGAAGAAGAATCAGTGCAAGGATCCCCAAATCGAGGCCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCCCGTGACTTACCAGCACTGGTGTTCACAAGGGCGGAATTTCTGGAGAGGGAGTGGTTCACCATGGCGGACTCTCCGGACATGCAGTGGTACTTCTTCAGTCCGAGAGTTTTTAAACACAGCAAAAGCAAAAGCACTCGGTCCAACAGGACCACGGAGGAAGGCTCCTGGAAGAAGCAAGGCAAGGACCGCAGAATCACTCAGGCACGTTCTGATAAGCAGATTGGGGGGAAGAGGATCTTGACCTTCTACCAAACTGGATTGCAGAAAAAACAGAAGACTGACTGGGTTATTCATGAGTATTATCTCACTAAGGCCGATTCTGATGAGCAGATCGGGGACTTTGTTCTCTGCCGCTTGAAGAAAAAGCTAGACAAGTCTGATCATGATAAGCAGGATGGTCCATTCTGCGGTGGAGGTGAACCTAGTAGAGGTAGCTGCAGTATGGCCTTCAATGTTGAAAATCAAGCATCTAAACAGCTGGGAAATGTTCTTTCAATTTCTGTTGAAGGTCAACCTGATAGCTGCAATTCATCTGATTCCGATATGGTTGAAGAGGTGAGAACAAAAATGCATTTTGATTTCTGCTATGAAATTTTCAATTTGAAGCACAAGAAGTATATTGAAAATGTAACCAACACTATCTTGTTTGTGATTCTTGATCTAACAGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

277

Amino Acids

31.97

Weight (kDa)

6.67

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 154 6.9e-32 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 6 cut(s) 15, 191, 224, 346, 511, 567
AclWI GGATC 3 cut(s) 101, 114, 401
AcsI RAATTY 2 cut(s) 194, 750
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 3 cut(s) 118, 566, 587
AgsI TTSAA 9 cut(s) 517, 610, 617, 654, 665, 710, 757, 763, 782
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 6 cut(s) 67, 526, 594, 637, 681, 827
AluI AGCT 6 cut(s) 67, 526, 594, 637, 681, 827
AlwI GGATC 3 cut(s) 101, 114, 401
AlwNI CAGNNNCTG 1 cut(s) 18
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 3 cut(s) 120, 471, 603
ApeKI GCWGC 5 cut(s) 12, 18, 67, 594, 681
ApoI RAATTY 2 cut(s) 194, 750
AspS9I GGNCC 4 cut(s) 297, 306, 343, 557
AsuHPI GGTGA 3 cut(s) 208, 587, 727
AvaII GGWCC 4 cut(s) 297, 306, 343, 557
BamHI GGATCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 159
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 440
BbvI GCAGC 5 cut(s) 5, 24, 54, 581, 668
BccI CCATC 2 cut(s) 131, 548
BciT130I CCWGG 1 cut(s) 325
BclI TGATCA 1 cut(s) 538
BfaI CTAG 2 cut(s) 527, 582
BfmI CTRYAG 1 cut(s) 595
BisI GCNGC 7 cut(s) 13, 16, 19, 68, 511, 595, 682
BlsI GCNGC 7 cut(s) 14, 17, 20, 69, 512, 596, 683
Bme1390I CCNGG 1 cut(s) 325
Bme18I GGWCC 4 cut(s) 297, 306, 343, 557
BmgT120I GGNCC 4 cut(s) 297, 306, 343, 557
BmiI GGNNCC 2 cut(s) 108, 322
BmrFI CCNGG 1 cut(s) 325
BmrI ACTGGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 635
BmuI ACTGGG 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 219, 309
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 566, 587
Bse1I ACTGG 3 cut(s) 180, 418, 446
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 325
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 219, 309
BseGI GGATG 2 cut(s) 126, 559
BseLI CCNNNNNNNGG 3 cut(s) 118, 566, 587
BseMII CTCAG 2 cut(s) 62, 371
BseNI ACTGG 3 cut(s) 180, 418, 446
BseXI GCAGC 5 cut(s) 5, 24, 54, 581, 668
BseYI CCCAGC 1 cut(s) 637
BshFI GGCC 3 cut(s) 122, 473, 605
BshVI ATCGAT 1 cut(s) 138
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 3 cut(s) 118, 566, 587
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 3 cut(s) 122, 473, 605
Bsp1286I GDGCHC 1 cut(s) 159
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 5 cut(s) 106, 393, 489, 538, 817
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 6 cut(s) 15, 191, 224, 346, 511, 567
BspANI GGCC 3 cut(s) 122, 473, 605
BspCNI CTCAG 2 cut(s) 63, 370
BspDI ATCGAT 1 cut(s) 138
BspEI TCCGGA 1 cut(s) 232
BspHI TCATGA 2 cut(s) 451, 541
BspLI GGNNCC 2 cut(s) 108, 322
BspMAI CTGCAG 1 cut(s) 599
BspPI GGATC 3 cut(s) 101, 114, 401
BspQI GCTCTTC 1 cut(s) 57
BsrI ACTGG 3 cut(s) 180, 418, 446
BssECI CCNNGG 2 cut(s) 219, 309
BssMI GATC 5 cut(s) 106, 393, 489, 538, 817
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 325
Bst6I CTCTTC 3 cut(s) 57, 383, 705
BstAPI GCANNNNNTGC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 71, 357, 468
BstDSI CCRYGG 2 cut(s) 219, 309
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 2 cut(s) 126, 559
BstKTI GATC 5 cut(s) 109, 396, 492, 541, 820
BstMBI GATC 5 cut(s) 106, 393, 489, 538, 817
BstMWI GCNNNNNNNGC 2 cut(s) 18, 345
BstNI CCWGG 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 323
BstSFI CTRYAG 1 cut(s) 595
BstV1I GCAGC 5 cut(s) 5, 24, 54, 581, 668
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 2 cut(s) 106, 393
BstYI RGATCY 2 cut(s) 106, 393
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 3 cut(s) 122, 473, 605
BsuTUI ATCGAT 1 cut(s) 138
BtgI CCRYGG 2 cut(s) 219, 309
BtsCI GGATG 2 cut(s) 126, 559
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 3 cut(s) 104, 173, 248
Cac8I GCNNGC 1 cut(s) 149
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 2 cut(s) 451, 541
Cfr13I GGNCC 4 cut(s) 297, 306, 343, 557
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 1 cut(s) 247
CviAII CATG 4 cut(s) 220, 238, 452, 542
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 3 cut(s) 71, 357, 468
DpnI GATC 5 cut(s) 108, 395, 491, 540, 819
DpnII GATC 5 cut(s) 106, 393, 489, 538, 817
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 57, 383, 705
EarI CTCTTC 3 cut(s) 57, 383, 705
EciI GGCGGA 2 cut(s) 206, 239
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 4 cut(s) 297, 306, 343, 557
Eco57I CTGAAG 1 cut(s) 238
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 732
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 4 cut(s) 223, 241, 455, 545
FaiI YATR 8 cut(s) 221, 239, 453, 543, 602, 704, 747, 777
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 1 cut(s) 509
FatI CATG 4 cut(s) 219, 237, 451, 541
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 7 cut(s) 13, 16, 19, 68, 511, 595, 682
FokI GGATG 2 cut(s) 113, 566
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 7 cut(s) 13, 16, 19, 68, 511, 595, 682
FspBI CTAG 2 cut(s) 527, 582
GluI GCNGC 7 cut(s) 13, 16, 19, 68, 511, 595, 682
GsaI CCCAGC 1 cut(s) 641
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 3 cut(s) 122, 473, 605
HapII CCGG 1 cut(s) 233
Hin1II CATG 4 cut(s) 223, 241, 455, 545
HincII GTYRAC 1 cut(s) 671
HindII GTYRAC 1 cut(s) 671
HinfI GANTC 8 cut(s) 45, 73, 94, 227, 351, 476, 695, 811
HpaII CCGG 1 cut(s) 233
HphI GGTGA 3 cut(s) 208, 587, 727
Hpy166II GTNNAC 4 cut(s) 183, 216, 578, 671
Hpy188I TCNGA 8 cut(s) 44, 58, 261, 370, 481, 538, 694, 700
Hpy188III TCNNGA 6 cut(s) 200, 233, 397, 452, 542, 815
Hpy8I GTNNAC 4 cut(s) 183, 216, 578, 671
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 311, 412, 616, 659
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 8 cut(s) 21, 102, 147, 241, 421, 597, 684, 730
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 345
HpyF3I CTNAG 3 cut(s) 71, 357, 468
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 4 cut(s) 223, 241, 455, 545
Kpn2I TCCGGA 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 5 cut(s) 106, 393, 489, 538, 817
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 326
Lsp1109I GCAGC 5 cut(s) 5, 24, 54, 581, 668
LweI GCATC 1 cut(s) 635
MaeI CTAG 2 cut(s) 527, 582
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 2 cut(s) 161, 787
MalI GATC 5 cut(s) 108, 395, 491, 540, 819
MboI GATC 5 cut(s) 106, 393, 489, 538, 817
MboII GAAGA 9 cut(s) 74, 100, 103, 244, 340, 400, 445, 529, 722
MflI RGATCY 2 cut(s) 106, 393
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 5 cut(s) 194, 654, 685, 750, 757
MlyI GAGTC 2 cut(s) 82, 221
MmeI TCCRAC 2 cut(s) 81, 324
MnlI CCTC 8 cut(s) 64, 112, 198, 307, 384, 566, 581, 706
Mph1103I ATGCAT 1 cut(s) 732
MroI TCCGGA 1 cut(s) 232
MseI TTAA 1 cut(s) 270
MspA1I CMGCKG 2 cut(s) 15, 637
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 325
MwoI GCNNNNNNNGC 2 cut(s) 18, 345
NcoI CCATGG 1 cut(s) 219
NdeII GATC 5 cut(s) 106, 393, 489, 538, 817
NlaIII CATG 4 cut(s) 223, 241, 455, 545
NlaIV GGNNCC 2 cut(s) 108, 322
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 732
NspI RCATGY 1 cut(s) 241
PagI TCATGA 2 cut(s) 451, 541
PciSI GCTCTTC 1 cut(s) 57
PfeI GAWTC 6 cut(s) 45, 94, 351, 476, 695, 811
PfoI TCCNGGA 1 cut(s) 323
PkrI GCNGC 7 cut(s) 14, 17, 20, 69, 512, 596, 683
PleI GAGTC 2 cut(s) 81, 221
PpsI GAGTC 2 cut(s) 81, 221
Psp6I CCWGG 1 cut(s) 323
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 108, 322
PspPI GGNCC 4 cut(s) 297, 306, 343, 557
PstI CTGCAG 1 cut(s) 599
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 2 cut(s) 106, 393
PvuII CAGCTG 1 cut(s) 637
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 7 cut(s) 13, 16, 19, 68, 511, 595, 682
Sau3AI GATC 5 cut(s) 106, 393, 489, 538, 817
Sau96I GGNCC 4 cut(s) 297, 306, 343, 557
SchI GAGTC 2 cut(s) 82, 221
ScrFI CCNGG 1 cut(s) 325
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 1 cut(s) 635
SfcI CTRYAG 1 cut(s) 595
SinI GGWCC 4 cut(s) 297, 306, 343, 557
Sse9I AATT 5 cut(s) 194, 654, 685, 750, 757
SsiI CCGC 6 cut(s) 15, 191, 224, 346, 511, 567
SspMI CTAG 2 cut(s) 527, 582
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 219
TaiI ACGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 117, 138
TaqII GACCGA 1 cut(s) 285
TasI AATT 5 cut(s) 194, 654, 685, 750, 757
TauI GCSGC 2 cut(s) 18, 513
TfiI GAWTC 6 cut(s) 45, 94, 351, 476, 695, 811
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 3 cut(s) 104, 180, 248
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 5 cut(s) 12, 18, 67, 594, 681
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 3 cut(s) 440, 678, 762
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 3 cut(s) 104, 180, 248
VpaK11BI GGWCC 4 cut(s) 297, 306, 343, 557
XagI CCTNNNNNAGG 1 cut(s) 585
XapI RAATTY 2 cut(s) 194, 750
XceI RCATGY 1 cut(s) 241
XspI CTAG 2 cut(s) 527, 582
Zsp2I ATGCAT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.