Rroxscaffold_4G00294940
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002549
Physical Location & Seq
Forward (+)
14864696 .. 14869607
4912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294940.1

Sequence Viewer

Length: 1254 bp
ATGATGATGAGCAGCGGCCGCATCACACTTCCTAAGGGTTTCCGATTCCGGCCCTCCGATGAGGAGCTGCTGAGTCATTACTTGGAGAAGAAGAATCAGCGCAAGGATCCCGAAGTGGAGGCCATCATCCCTGAAATCAATGTGTGCGACCACGAGCCTCGCGACTTACCAGCCCTGGTGTTCACAAGGGCGGTATTTCTGGAGAGGGAGTGGTTCACCATGGCGGACTCTCCGGACATGGAGTGGTACTTCTTCAGTCCGCGAGTTTTTAAACACAGCAAAAGCACTAGGTCCAACAGGACCACGGAGGAAGGCTACTGGAAGAAGCAAGGCAAGGACCGCAGAATCACTCAGGCACGTTCTGATAAGCAGATCGGGGGGAAGATTATCTTGACCTTCTACCAAACTGATGGAGTGCAGAAAAAACAGAAGACTGACTGGGTTATTCATGAGTATTATCTCACTAAGGCCGATTCTAATGAGCAGATGGGGGACTTTGTTCTCTGCCGCTTGAAGAAAAAGTCCGACAAGTCTGATCATGATGAGCAGGAAGGTCCATTCTGCGGTGGAGATGAACCTAGTAGCGGTAACTGCAGTATGGCCTTCATTAATGTTGAAAATCAAGCATCCAAAGAGCAGGGAAATGTTCTTTCGATTTCTGTTGAATGTCAACCTAATAGCTGCAATTCATCTGATTCCGACATGGTTGAAGAGCTACTTGATGAGCCAGGAAATCAACCTCCGCCACCTCAACTGCAGTCACCAATAAAGCTGGGTAATGTTTCACACACCACCAATGTCCATATTGATGAATGTCGTAAGAGGAAATATCAATTTGTGGATAATGACTCTTCTCCTACTAAAAATAATCATATTTCAACCAATGATGTTGATGAACTAGTTGGCAACACTTCATCTTATTCTGAAAGTCATGCTGCAGATGCTATTCCAAAGGAGTACTCTCAACCAGGAGAAAATCTGGGATCTGATTCATTTCAGTCACTGGAACCACTATCAGTAAACAGAGAACCGAGAGATTTTTCCCATCACAATAATTTTTTTGGATGGGATGATTTGCCATATTTAATTGAAGGTATTGACTCCTCTCTCGAAAAGTTCTCAGATACAGATATTGATGGAGGTAGCAGTGACAGATACACCCAAGTCGTCTATGGATCGGTAAACAATTATTCTACATTTAGTGGCGGATCCACGGTACAAAAATGGGGTGGGCTAATCGAAAGTTGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

417

Amino Acids

47.26

Weight (kDa)

4.99

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 153 8.2e-33 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1252
AccII CGCG 2 cut(s) 162, 262
AccIII TCCGGA 1 cut(s) 232
AclWI GGATC 6 cut(s) 101, 114, 991, 1183, 1203, 1216
AcoI YGGCCR 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 3 cut(s) 248, 959, 1218
AfiI CCNNNNNNNGG 2 cut(s) 563, 584
AgsI TTSAA 6 cut(s) 514, 617, 665, 710, 879, 1091
AhlI ACTAGT 1 cut(s) 898
AjnI CCWGG 3 cut(s) 174, 727, 967
AluBI AGCT 4 cut(s) 67, 681, 715, 772
AluI AGCT 4 cut(s) 67, 681, 715, 772
AlwI GGATC 6 cut(s) 101, 114, 991, 1183, 1203, 1216
AlwNI CAGNNNCTG 1 cut(s) 1003
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 5 cut(s) 16, 50, 120, 468, 600
ApeKI GCWGC 4 cut(s) 12, 67, 681, 935
AseI ATTAAT 1 cut(s) 609
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 5 cut(s) 51, 291, 300, 337, 554
AsuHPI GGTGA 2 cut(s) 208, 753
AvaII GGWCC 4 cut(s) 291, 300, 337, 554
AxyI CCTNAGG 1 cut(s) 33
BamHI GGATCC 2 cut(s) 106, 1208
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 437
BbvI GCAGC 4 cut(s) 24, 54, 668, 922
BccI CCATC 6 cut(s) 131, 404, 481, 1053, 1059, 1130
BciT130I CCWGG 3 cut(s) 176, 729, 969
BclI TGATCA 1 cut(s) 535
BcuI ACTAGT 1 cut(s) 898
BfaI CTAG 3 cut(s) 288, 579, 899
BfmI CTRYAG 3 cut(s) 592, 755, 936
BisI GCNGC 7 cut(s) 13, 16, 19, 68, 508, 682, 936
BlsI GCNGC 7 cut(s) 14, 17, 20, 69, 509, 683, 937
BmcAI AGTACT 1 cut(s) 959
Bme1390I CCNGG 3 cut(s) 176, 729, 969
Bme18I GGWCC 4 cut(s) 291, 300, 337, 554
BmgT120I GGNCC 5 cut(s) 51, 291, 300, 337, 554
BmiI GGNNCC 3 cut(s) 108, 1008, 1210
BmrFI CCNGG 3 cut(s) 176, 729, 969
BmrI ACTGGG 1 cut(s) 448
BmsI GCATC 3 cut(s) 30, 635, 931
BmuI ACTGGG 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 221
BsaJI CCNNGG 4 cut(s) 174, 219, 303, 1212
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 2 cut(s) 563, 584
Bse1I ACTGG 3 cut(s) 323, 443, 1008
Bse21I CCTNAGG 1 cut(s) 33
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 3 cut(s) 176, 729, 969
BseDI CCNNGG 4 cut(s) 174, 219, 303, 1212
BseGI GGATG 4 cut(s) 126, 626, 1070, 1075
BseLI CCNNNNNNNGG 2 cut(s) 563, 584
BseMII CTCAG 3 cut(s) 62, 365, 1134
BseNI ACTGG 3 cut(s) 323, 443, 1008
BseRI GAGGAG 2 cut(s) 77, 1093
BseX3I CGGCCG 1 cut(s) 16
BseXI GCAGC 4 cut(s) 24, 54, 668, 922
BseYI CCCAGC 1 cut(s) 772
BsgI GTGCAG 1 cut(s) 437
Bsh1236I CGCG 2 cut(s) 162, 262
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 5 cut(s) 18, 52, 122, 470, 602
BsiEI CGRYCG 1 cut(s) 19
BsiSI CCGG 2 cut(s) 49, 233
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 563, 584
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 5 cut(s) 18, 52, 122, 470, 602
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 6 cut(s) 106, 372, 535, 983, 1175, 1208
Bsp19I CCATGG 1 cut(s) 219
Bsp68I TCGCGA 1 cut(s) 162
BspANI GGCC 5 cut(s) 18, 52, 122, 470, 602
BspCNI CTCAG 3 cut(s) 63, 364, 1133
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 2 cut(s) 162, 262
BspHI TCATGA 2 cut(s) 448, 538
BspLI GGNNCC 3 cut(s) 108, 1008, 1210
BspMAI CTGCAG 3 cut(s) 596, 759, 940
BspPI GGATC 6 cut(s) 101, 114, 991, 1183, 1203, 1216
BspQI GCTCTTC 1 cut(s) 705
BsrI ACTGG 3 cut(s) 323, 443, 1008
BssECI CCNNGG 4 cut(s) 174, 219, 303, 1212
BssMI GATC 6 cut(s) 106, 372, 535, 983, 1175, 1208
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 3 cut(s) 176, 729, 969
Bst4CI ACNGT 1 cut(s) 1216
Bst6I CTCTTC 2 cut(s) 705, 856
BstDEI CTNAG 5 cut(s) 33, 71, 351, 465, 1120
BstDSI CCRYGG 3 cut(s) 219, 303, 1212
BstF5I GGATG 4 cut(s) 126, 626, 1070, 1075
BstFNI CGCG 2 cut(s) 162, 262
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 6 cut(s) 109, 375, 538, 986, 1178, 1211
BstMBI GATC 6 cut(s) 106, 372, 535, 983, 1175, 1208
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 4 cut(s) 18, 339, 591, 941
BstNI CCWGG 3 cut(s) 176, 729, 969
BstSCI CCNGG 3 cut(s) 174, 727, 967
BstSFI CTRYAG 3 cut(s) 592, 755, 936
BstUI CGCG 2 cut(s) 162, 262
BstV1I GCAGC 4 cut(s) 24, 54, 668, 922
BstV2I GAAGAC 1 cut(s) 437
BstX2I RGATCY 3 cut(s) 106, 983, 1208
BstXI CCANNNNNNTGG 1 cut(s) 410
BstYI RGATCY 3 cut(s) 106, 983, 1208
BstZI CGGCCG 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 5 cut(s) 18, 52, 122, 470, 602
BtgI CCRYGG 3 cut(s) 219, 303, 1212
BtsCI GGATG 4 cut(s) 126, 626, 1070, 1075
BtsI GCAGTG 1 cut(s) 1153
BtsIMutI CAGTG 2 cut(s) 1001, 1153
BtuMI TCGCGA 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 1003
CciI TCATGA 2 cut(s) 448, 538
CciNI GCGGCCGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 5 cut(s) 51, 291, 300, 337, 554
Csp6I GTAC 3 cut(s) 247, 958, 1217
CviAII CATG 6 cut(s) 220, 238, 449, 539, 703, 932
CviQI GTAC 3 cut(s) 247, 958, 1217
DdeI CTNAG 5 cut(s) 33, 71, 351, 465, 1120
DpnI GATC 6 cut(s) 108, 374, 537, 985, 1177, 1210
DpnII GATC 6 cut(s) 106, 372, 535, 983, 1175, 1208
DraI TTTAAA 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 16
EagI CGGCCG 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 705, 856
EarI CTCTTC 2 cut(s) 705, 856
EciI GGCGGA 3 cut(s) 239, 732, 1221
EclXI CGGCCG 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 4 cut(s) 291, 300, 337, 554
Eco52I CGGCCG 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 33
EcoRII CCWGG 3 cut(s) 174, 727, 967
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 6 cut(s) 223, 241, 452, 542, 706, 935
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 702, 734
FaqI GGGAC 1 cut(s) 506
FatI CATG 6 cut(s) 219, 237, 448, 538, 702, 931
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 7 cut(s) 13, 16, 19, 68, 508, 682, 936
FokI GGATG 4 cut(s) 113, 613, 1077, 1082
Fsp4HI GCNGC 7 cut(s) 13, 16, 19, 68, 508, 682, 936
FspBI CTAG 3 cut(s) 288, 579, 899
GlaI GCGC 1 cut(s) 101
GluI GCNGC 7 cut(s) 13, 16, 19, 68, 508, 682, 936
GsaI CCCAGC 1 cut(s) 776
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 5 cut(s) 18, 52, 122, 470, 602
HapII CCGG 2 cut(s) 49, 233
HhaI GCGC 1 cut(s) 102
Hin1II CATG 6 cut(s) 223, 241, 452, 542, 706, 935
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 671
HindII GTYRAC 1 cut(s) 671
HpaII CCGG 2 cut(s) 49, 233
HphI GGTGA 2 cut(s) 208, 753
Hpy166II GTNNAC 5 cut(s) 183, 216, 671, 1021, 1183
Hpy188III TCNNGA 8 cut(s) 110, 161, 200, 233, 391, 449, 539, 1109
Hpy8I GTNNAC 5 cut(s) 183, 216, 671, 1021, 1183
HpyAV CCTTC 5 cut(s) 305, 406, 545, 613, 1085
HpyCH4III ACNGT 1 cut(s) 1216
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 418, 594, 684, 757, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 339, 591, 941
HpyF3I CTNAG 5 cut(s) 33, 71, 351, 465, 1120
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 6 cut(s) 223, 241, 452, 542, 706, 935
HspAI GCGC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 6 cut(s) 106, 372, 535, 983, 1175, 1208
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 4 cut(s) 24, 54, 668, 922
LweI GCATC 3 cut(s) 30, 635, 931
MaeI CTAG 3 cut(s) 288, 579, 899
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 4 cut(s) 587, 759, 999, 1148
MalI GATC 6 cut(s) 108, 374, 537, 985, 1177, 1210
MboI GATC 6 cut(s) 106, 372, 535, 983, 1175, 1208
MboII GAAGA 9 cut(s) 100, 103, 244, 334, 394, 442, 526, 722, 843
MflI RGATCY 3 cut(s) 106, 983, 1208
MluCI AATT 5 cut(s) 685, 833, 1054, 1086, 1186
MlyI GAGTC 4 cut(s) 82, 221, 842, 1094
MmeI TCCRAC 3 cut(s) 318, 549, 723
MroI TCCGGA 1 cut(s) 232
MseI TTAA 3 cut(s) 270, 609, 1085
MslI CAYNNNNRTG 1 cut(s) 807
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 2 cut(s) 49, 233
MspR9I CCNGG 3 cut(s) 176, 729, 969
MvaI CCWGG 3 cut(s) 176, 729, 969
MvnI CGCG 2 cut(s) 162, 262
MwoI GCNNNNNNNGC 4 cut(s) 18, 339, 591, 941
NcoI CCATGG 1 cut(s) 219
NdeII GATC 6 cut(s) 106, 372, 535, 983, 1175, 1208
NlaIII CATG 6 cut(s) 223, 241, 452, 542, 706, 935
NlaIV GGNNCC 3 cut(s) 108, 1008, 1210
NmuCI GTSAC 3 cut(s) 759, 999, 1148
NotI GCGGCCGC 1 cut(s) 16
NruI TCGCGA 1 cut(s) 162
PagI TCATGA 2 cut(s) 448, 538
PciSI GCTCTTC 1 cut(s) 705
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 6 cut(s) 45, 94, 345, 473, 695, 989
PkrI GCNGC 7 cut(s) 14, 17, 20, 69, 509, 683, 937
PleI GAGTC 4 cut(s) 81, 221, 842, 1094
PpsI GAGTC 4 cut(s) 81, 221, 842, 1094
PshBI ATTAAT 1 cut(s) 609
PsiI TTATAA 1 cut(s) 1252
Psp6I CCWGG 3 cut(s) 174, 727, 967
PspFI CCCAGC 1 cut(s) 772
PspGI CCWGG 3 cut(s) 174, 727, 967
PspN4I GGNNCC 3 cut(s) 108, 1008, 1210
PspPI GGNCC 5 cut(s) 51, 291, 300, 337, 554
PstI CTGCAG 3 cut(s) 596, 759, 940
PstNI CAGNNNCTG 1 cut(s) 1003
PsuI RGATCY 3 cut(s) 106, 983, 1208
RruI TCGCGA 1 cut(s) 162
RsaI GTAC 3 cut(s) 248, 959, 1218
RsaNI GTAC 3 cut(s) 247, 958, 1217
RseI CAYNNNNRTG 1 cut(s) 807
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 3 cut(s) 270, 609, 1085
SatI GCNGC 7 cut(s) 13, 16, 19, 68, 508, 682, 936
Sau3AI GATC 6 cut(s) 106, 372, 535, 983, 1175, 1208
Sau96I GGNCC 5 cut(s) 51, 291, 300, 337, 554
ScaI AGTACT 1 cut(s) 959
SchI GAGTC 4 cut(s) 82, 221, 842, 1094
ScrFI CCNGG 3 cut(s) 176, 729, 969
SfaNI GCATC 3 cut(s) 30, 635, 931
SfcI CTRYAG 3 cut(s) 592, 755, 936
SinI GGWCC 4 cut(s) 291, 300, 337, 554
SmiMI CAYNNNNRTG 1 cut(s) 807
SpeI ACTAGT 1 cut(s) 898
Sse9I AATT 5 cut(s) 685, 833, 1054, 1086, 1186
SspMI CTAG 3 cut(s) 288, 579, 899
StyD4I CCNGG 3 cut(s) 174, 727, 967
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 1216
TaiI ACGT 1 cut(s) 361
TaqI TCGA 3 cut(s) 653, 1110, 1239
TasI AATT 5 cut(s) 685, 833, 1054, 1086, 1186
TatI WGTACW 1 cut(s) 957
TauI GCSGC 3 cut(s) 18, 21, 510
TfiI GAWTC 6 cut(s) 45, 94, 345, 473, 695, 989
Tru1I TTAA 3 cut(s) 270, 609, 1085
Tru9I TTAA 3 cut(s) 270, 609, 1085
TscAI CASTG 2 cut(s) 1008, 1153
TseFI GTSAC 3 cut(s) 759, 999, 1148
TseI GCWGC 4 cut(s) 12, 67, 681, 935
Tsp45I GTSAC 3 cut(s) 759, 999, 1148
TspDTI ATGAA 8 cut(s) 437, 588, 595, 678, 825, 903, 909, 981
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 1008, 1153
VpaK11BI GGWCC 4 cut(s) 291, 300, 337, 554
VspI ATTAAT 1 cut(s) 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 1169
XspI CTAG 3 cut(s) 288, 579, 899
ZrmI AGTACT 1 cut(s) 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.