Rroxscaffold_4G00294980
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002549
Physical Location & Seq
Forward (+)
14877533 .. 14881140
3608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294980.1

Sequence Viewer

Length: 1518 bp
ATGAGCAGCGGCCGGATCACACTTCCAAAGGGTTTCCGATTCCAGCCATCCGACGAGGAGCTGCTGAGTCATTACTTGGAGAAGAAGAATCAGCGCAAGGATCCCCAAATCGAGGCCATCATCCCAGAAATCAATGTGTGCGACCACGAGCCCCGCGATTTACCAGCCCTGGTGTTCACAAGGGCGGAATTTCTGGAGAAGGAGTGGTTCACCATGGCGGACTCTCCGGACATGGAGTGGTACTTCTTCAGTCCGCGAGTTTTTAAACACAGCACAAGCAAAAGCAAAGGCAAAGACAAAAGCAAAAGCACTCAAATCAACAGGGCTACCAAGGAAGGCTCCTGGAAGAAGCAAGGCGGTGACAAAAGAATCACTCGGCCCTATTCTGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCTGCCGAAGAAACAGAGGACTGACTGGGTTATCCATGAGTATTATCTCACCAAGGCCAATTCTGATGAGCAGGTCGGGGACTTTGTTCTCTGCCGCTTGAAGAACAAGTCAGGCAAGTCTGATCATGATCAGCAGGATGATCCACTGTGCGATGGAGGTGAACCTAATAGTGGTAGCTGCAGTATGGTCTCCAATGTTGAAGATCAAGGATCCAAAGAGCTGGGAACTGTTCTTCCGATTTCCAATATCAATGATGATGAAGCTGAACATGGTGGCGGTAGCTGCAGTATGGCCTTCAATGTTGAAAATCAAGCATCCAAACAGCTGGAGAATGTTCTTCAGATTCCCAATCGCAATGATGGTGACACTGAACATGGTGGTGGCAGCGGCCACATCGCCTCTGGTTTCGAAAATGAAGCTGCAGAATTTGGTATGCTTACACAAGCAGAATATTACCTGGCATTCGAGGTGCTGGAAGATGCTGTTAGGGAATATGATGGTAATGACCAAGAAGTTAGAGGCTCACAAACTGATTTTTGTTATATTGATCAGAATGATCTTTGGTTCTCTGTTGAAGATCAACCAGCTGATAGCTGCAATTCATCTGATTCCAATATAGTTGAAAAGCCCCTTGATGAGCCTGGAAATCTGGCCTTGCCCCTTCATCCACTTCCGCCACCCAATATGTTTGAAAAGCCACTTGATGAGCCAGGAAATCTGGCCTTACCCCTTCATCCACCTCCATCACCTCAACTGCAGTCACCAATATACACAAAGCTGGGCAACACCAATGTCCAAAATGATGAATCTCGTAAGAGGAAATATTCATTTGGGGATAATGACCCTTTTCTTACGAAGAAGAATCATATTGATGAAGTAGATAGCAACTCTTCATCTAATTCTGAAAATCAAGCTGCGGATGCGATTCCAGAGGGATATTCTCAACCAGGAGAAAATCTGGGATCTGGTTCATTTCAGTCGCAGAAACTACCATCAATAAACAGAGAACCGGAGATTTTCCCCATGACAATAATAGTTGGTGAAGATGCAGAGGCATTATATTTGCTGTTTATCTTGCCCAGAAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

505

Amino Acids

56.56

Weight (kDa)

4.79

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 157 1.9e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 435, 487
AccII CGCG 2 cut(s) 156, 256
AccIII TCCGGA 1 cut(s) 226
AclWI GGATC 8 cut(s) 23, 95, 108, 419, 560, 630, 643, 1396
AcoI YGGCCR 2 cut(s) 10, 814
AcsI RAATTY 2 cut(s) 188, 851
AcuI CTGAAG 2 cut(s) 232, 749
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 112, 596
AgsI TTSAA 7 cut(s) 526, 626, 724, 731, 1001, 1049, 1118
AjnI CCWGG 6 cut(s) 168, 341, 882, 1066, 1135, 1372
AloI GAACNNNNNNTCC 2 cut(s) 643, 675
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 8 cut(s) 23, 95, 108, 419, 560, 630, 643, 1396
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 8 cut(s) 10, 114, 377, 480, 717, 814, 1077, 1146
ApeKI GCWGC 8 cut(s) 6, 61, 603, 708, 810, 845, 1020, 1340
ApoI RAATTY 2 cut(s) 188, 851
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 8 cut(s) 202, 371, 466, 596, 800, 1164, 1179, 1478
AsuII TTCGAA 1 cut(s) 834
BamHI GGATCC 2 cut(s) 100, 635
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 1 cut(s) 146
BbvI GCAGC 8 cut(s) 18, 48, 590, 695, 822, 832, 1007, 1327
BccI CCATC 7 cut(s) 55, 125, 572, 779, 917, 1177, 1426
BciT130I CCWGG 6 cut(s) 170, 343, 884, 1068, 1137, 1374
BclI TGATCA 3 cut(s) 547, 553, 973
BcoDI GTCTC 1 cut(s) 619
BfmI CTRYAG 4 cut(s) 604, 709, 846, 1181
BfuAI ACCTGC 2 cut(s) 435, 487
Bme1390I CCNGG 6 cut(s) 170, 343, 884, 1068, 1137, 1374
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 3 cut(s) 102, 340, 637
BmrFI CCNGG 6 cut(s) 170, 343, 884, 1068, 1137, 1374
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 4 cut(s) 749, 895, 1336, 1462
BmuI ACTGGG 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 215, 773
Bpu14I TTCGAA 1 cut(s) 834
BsaBI GATNNNNATC 1 cut(s) 552
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 4 cut(s) 168, 213, 330, 477
BsaWI WCCGGW 2 cut(s) 226, 1435
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 596
Bse1I ACTGG 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 787
Bse8I GATNNNNATC 1 cut(s) 552
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 6 cut(s) 170, 343, 884, 1068, 1137, 1374
BseDI CCNNGG 4 cut(s) 168, 213, 330, 477
BseGI GGATG 7 cut(s) 47, 120, 568, 740, 1090, 1159, 1351
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 2 cut(s) 112, 596
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 71
BseX3I CGGCCG 1 cut(s) 10
BseXI GCAGC 8 cut(s) 18, 48, 590, 695, 822, 832, 1007, 1327
BseYI CCCAGC 2 cut(s) 646, 1204
Bsh1236I CGCG 2 cut(s) 156, 256
Bsh1285I CGRYCG 1 cut(s) 13
BshFI GGCC 8 cut(s) 12, 116, 379, 482, 719, 816, 1079, 1148
BsiEI CGRYCG 1 cut(s) 13
BsiSI CCGG 3 cut(s) 13, 227, 1436
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 2 cut(s) 112, 596
BsmAI GTCTC 1 cut(s) 619
BsmFI GGGAC 1 cut(s) 518
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 8 cut(s) 12, 116, 379, 482, 719, 816, 1079, 1148
Bso31I GGTCTC 1 cut(s) 619
Bsp119I TTCGAA 1 cut(s) 834
Bsp1286I GDGCHC 1 cut(s) 153
Bsp13I TCCGGA 1 cut(s) 226
Bsp19I CCATGG 1 cut(s) 213
BspANI GGCC 8 cut(s) 12, 116, 379, 482, 719, 816, 1079, 1148
BspCNI CTCAG 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 226
BspFNI CGCG 2 cut(s) 156, 256
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 3 cut(s) 102, 340, 637
BspMAI CTGCAG 4 cut(s) 608, 713, 850, 1185
BspMI ACCTGC 2 cut(s) 435, 487
BspPI GGATC 8 cut(s) 23, 95, 108, 419, 560, 630, 643, 1396
BspT104I TTCGAA 1 cut(s) 834
BspTNI GGTCTC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 787
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 4 cut(s) 168, 213, 330, 477
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 3 cut(s) 213, 330, 477
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 6 cut(s) 170, 343, 884, 1068, 1137, 1374
Bst4CI ACNGT 2 cut(s) 573, 655
Bst6I CTCTTC 2 cut(s) 401, 1321
BstBI TTCGAA 1 cut(s) 834
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 7 cut(s) 47, 120, 568, 740, 1090, 1159, 1351
BstFNI CGCG 2 cut(s) 156, 256
BstHHI GCGC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 619
BstMCI CGRYCG 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 708, 1346
BstNI CCWGG 6 cut(s) 170, 343, 884, 1068, 1137, 1374
BstSCI CCNGG 6 cut(s) 168, 341, 882, 1066, 1135, 1372
BstSFI CTRYAG 4 cut(s) 604, 709, 846, 1181
BstUI CGCG 2 cut(s) 156, 256
BstV1I GCAGC 8 cut(s) 18, 48, 590, 695, 822, 832, 1007, 1327
BstX2I RGATCY 4 cut(s) 100, 411, 635, 1388
BstXI CCANNNNNNTGG 2 cut(s) 646, 751
BstYI RGATCY 4 cut(s) 100, 411, 635, 1388
BstZI CGGCCG 1 cut(s) 10
BsuRI GGCC 8 cut(s) 12, 116, 379, 482, 719, 816, 1079, 1148
BtgI CCRYGG 1 cut(s) 213
BtgZI GCGATG 2 cut(s) 591, 805
BtsCI GGATG 7 cut(s) 47, 120, 568, 740, 1090, 1159, 1351
BtsIMutI CAGTG 2 cut(s) 569, 792
BveI ACCTGC 2 cut(s) 435, 487
CciI TCATGA 1 cut(s) 550
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 378
Csp6I GTAC 1 cut(s) 241
CviAII CATG 7 cut(s) 214, 232, 461, 551, 695, 800, 1450
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 65
DraI TTTAAA 1 cut(s) 265
EaeI YGGCCR 2 cut(s) 10, 814
EagI CGGCCG 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 401, 1321
EarI CTCTTC 2 cut(s) 401, 1321
EciI GGCGGA 3 cut(s) 200, 233, 1089
EclXI CGGCCG 1 cut(s) 10
Eco130I CCWWGG 3 cut(s) 213, 330, 477
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 619
Eco52I CGGCCG 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 232, 749
EcoRII CCWGG 6 cut(s) 168, 341, 882, 1066, 1135, 1372
EcoT14I CCWWGG 3 cut(s) 213, 330, 477
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 3 cut(s) 213, 330, 477
FaeI CATG 7 cut(s) 217, 235, 464, 554, 698, 803, 1453
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 1 cut(s) 518
FatI CATG 7 cut(s) 213, 231, 460, 550, 694, 799, 1449
FauI CCCGC 1 cut(s) 161
FbaI TGATCA 3 cut(s) 547, 553, 973
FokI GGATG 7 cut(s) 34, 107, 575, 727, 1077, 1146, 1358
FriOI GRGCYC 1 cut(s) 153
GlaI GCGC 1 cut(s) 95
GsaI CCCAGC 2 cut(s) 650, 1208
GsuI CTGGAG 2 cut(s) 215, 773
HaeIII GGCC 8 cut(s) 12, 116, 379, 482, 719, 816, 1079, 1148
HapII CCGG 3 cut(s) 13, 227, 1436
HhaI GCGC 1 cut(s) 96
Hin1II CATG 7 cut(s) 217, 235, 464, 554, 698, 803, 1453
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HpaII CCGG 3 cut(s) 13, 227, 1436
HphI GGTGA 8 cut(s) 202, 371, 466, 596, 800, 1164, 1179, 1478
Hpy166II GTNNAC 3 cut(s) 177, 210, 587
Hpy188III TCNNGA 5 cut(s) 194, 227, 415, 551, 1355
Hpy8I GTNNAC 3 cut(s) 177, 210, 587
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 6 cut(s) 193, 329, 430, 730, 1097, 1166
HpyCH4III ACNGT 2 cut(s) 573, 655
HpyCH4V TGCA 6 cut(s) 606, 711, 848, 1023, 1183, 1475
HpyF10VI GCNNNNNNNGC 2 cut(s) 708, 1346
HpyF3I CTNAG 1 cut(s) 65
Hsp92II CATG 7 cut(s) 217, 235, 464, 554, 698, 803, 1453
HspAI GCGC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 226
Ksp22I TGATCA 3 cut(s) 547, 553, 973
LmnI GCTCC 2 cut(s) 58, 344
Lsp1109I GCAGC 8 cut(s) 18, 48, 590, 695, 822, 832, 1007, 1327
LweI GCATC 4 cut(s) 749, 895, 1336, 1462
MaeIII GTNAC 3 cut(s) 359, 788, 1185
MflI RGATCY 4 cut(s) 100, 411, 635, 1388
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 5 cut(s) 188, 484, 851, 1024, 1324
MlyI GAGTC 2 cut(s) 76, 215
MmeI TCCRAC 1 cut(s) 75
MroI TCCGGA 1 cut(s) 226
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 2 cut(s) 804, 1296
MspA1I CMGCKG 4 cut(s) 9, 751, 813, 1013
MspI CCGG 3 cut(s) 13, 227, 1436
MspR9I CCNGG 6 cut(s) 170, 343, 884, 1068, 1137, 1374
Mva1269I GAATGC 1 cut(s) 887
MvaI CCWGG 6 cut(s) 170, 343, 884, 1068, 1137, 1374
MvnI CGCG 2 cut(s) 156, 256
MwoI GCNNNNNNNGC 2 cut(s) 708, 1346
NcoI CCATGG 1 cut(s) 213
NlaIII CATG 7 cut(s) 217, 235, 464, 554, 698, 803, 1453
NlaIV GGNNCC 3 cut(s) 102, 340, 637
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 3 cut(s) 359, 788, 1185
NspV TTCGAA 1 cut(s) 834
PagI TCATGA 1 cut(s) 550
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 887
PfeI GAWTC 8 cut(s) 39, 88, 369, 769, 1034, 1232, 1288, 1351
PfoI TCCNGGA 1 cut(s) 341
PleI GAGTC 2 cut(s) 75, 215
PpsI GAGTC 2 cut(s) 75, 215
Psp6I CCWGG 6 cut(s) 168, 341, 882, 1066, 1135, 1372
PspFI CCCAGC 2 cut(s) 646, 1204
PspGI CCWGG 6 cut(s) 168, 341, 882, 1066, 1135, 1372
PspN4I GGNNCC 3 cut(s) 102, 340, 637
PspPI GGNCC 1 cut(s) 378
PstI CTGCAG 4 cut(s) 608, 713, 850, 1185
PsuI RGATCY 4 cut(s) 100, 411, 635, 1388
PvuII CAGCTG 2 cut(s) 751, 1013
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 2 cut(s) 804, 1296
SaqAI TTAA 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 2 cut(s) 76, 215
ScrFI CCNGG 6 cut(s) 170, 343, 884, 1068, 1137, 1374
SduI GDGCHC 1 cut(s) 153
SfaNI GCATC 4 cut(s) 749, 895, 1336, 1462
SfcI CTRYAG 4 cut(s) 604, 709, 846, 1181
SfuI TTCGAA 1 cut(s) 834
SmiMI CAYNNNNRTG 2 cut(s) 804, 1296
Sse9I AATT 5 cut(s) 188, 484, 851, 1024, 1324
SspI AATATT 2 cut(s) 878, 1250
StyD4I CCNGG 6 cut(s) 168, 341, 882, 1066, 1135, 1372
StyI CCWWGG 3 cut(s) 213, 330, 477
TaaI ACNGT 2 cut(s) 573, 655
TaqI TCGA 3 cut(s) 111, 834, 891
TasI AATT 5 cut(s) 188, 484, 851, 1024, 1324
TauI GCSGC 3 cut(s) 12, 522, 816
TfiI GAWTC 8 cut(s) 39, 88, 369, 769, 1034, 1232, 1288, 1351
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 576, 799
TseFI GTSAC 3 cut(s) 359, 788, 1185
TseI GCWGC 8 cut(s) 6, 61, 603, 708, 810, 845, 1020, 1340
Tsp45I GTSAC 3 cut(s) 359, 788, 1185
TspRI CASTG 2 cut(s) 576, 799
XapI RAATTY 2 cut(s) 188, 851
XcmI CCANNNNNNNNNTGG 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.