RchiOBHm_Chr1g0361391
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002549
Physical Location & Seq
Reverse (-)
53373485 .. 53376395
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58627

Sequence Viewer

Length: 1395 bp
ATGATGATGATGAGCAGCGACCGCATCACACTTCCAAAGGGTTTCCGATTCCAGCCCTCGGAGGAGGAGCTGCTGAGTCATTACTTGGTGAAGAAGAATCATCAGCGCAAGGATCCCGAAATCGAGGTCATCATCCCTGAGATCAATGTGTGCGACCACGAGCCCCGCGATTTACCAGCCCTGGTGTTCACAAGGGCGAAATTTCTGCCGGCCTCTCCGAACATGGAGTGGCACTTCTTCAGTCGGCGAGTTTTTAAACACAGCGAAAGCAAAAGCAAAGGCACTCGAATCAACAGGGCTACCAAGGAAGGCTCCTGGAAGAAGCAAGGCGATGACAAAAGAATCACTCGGCCCTATTCTGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCTGCCGAAGAAACAGAGGACTGACTGGGTTATCCATGAGTATTATCTCACTAAGCCCAATTCTGATGAGCAGATCGGGGACTTTGTTCTCTGCCGCTTGAAGCACAAGTCAGGCAAGTCTGATCATGATCAGCAGGACGATCCACTGTGCGATGGAGGTGAACCTAATAGTGGTAGCTGCAGTATGGTCTCCAACGTTGAAGATCAAGGATCCAAAGAGCTGGGAACTGTTCTTCCGATTCCCAATGGCAATAATGATGAAGCTGAACATGGTGGCGGTAGCTGCAGTATGGCCTTTGATGTTGAAAATCAAGCATCCAAACAGCTGGAAAATGATCTTTCGATTCCCAATGGCAATGATAATGAAGCTGAACATGGAAGTAGCTGTTGCCCCATCACCTCTGCTTTCGATAATGAAGCTGCAGCAGATGGTATGCTTACAGAAGCAGAAGAAGACCTGGCATTTAAGGAGCTGGAAGAATTTTATGGCAATGAGCAAGATGTTAGAGGCTCGCAAACTTATCCATGTTATATTGATAAGAATGATCTTTCGATCTCTGTCAAAGGTCAACCTGCTGATAACTGCAATTCATCTGATTCTGCTATGGTTGAAGAGCCACTTGATGAGCCAGGAAATCTGGCCTTACCCCTTCATCCACCTCCGTCACCTCAACTGCAGTCACCAATATACACAAAGCCGGGCACCACCAATGTCCAAAATGATGAATCTCGTAAGAGGAAATATTCATTTGGGGATAATGACCCTTTTCTTACGAAGAAGAATCATATTGACGAAGTAGATAGCAACTCTTCATCTAATTCTGAAAATCAAGCTGCGGATGCGATTCCAGAGGTCAGAATAAGCATGCTCTTAAACCCTTTCTTATTTGAATTTCTAAATATGCAGCAGCACAAGAAGTGTATCCAAACTCAACTATTTCTTTCTGTGATTGTTAATTCAGGGATATTCTCAACCAGGAGAAAATCTGGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

464

Amino Acids

52.11

Weight (kDa)

5.2

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 148 1.4e-29 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 408, 979
AccB1I GGYRCC 1 cut(s) 1100
AccII CGCG 1 cut(s) 168
AciI CCGC 5 cut(s) 22, 166, 493, 675, 1235
AclI AACGTT 1 cut(s) 594
AclWI GGATC 6 cut(s) 107, 120, 392, 533, 603, 616
AcsI RAATTY 3 cut(s) 200, 878, 1289
AcuI CTGAAG 1 cut(s) 223
AfiI CCNNNNNNNGG 2 cut(s) 58, 569
AgsI TTSAA 5 cut(s) 499, 599, 704, 1010, 1289
AjnI CCWGG 5 cut(s) 180, 314, 855, 1027, 1373
AloI GAACNNNNNNTCC 2 cut(s) 616, 648
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 6 cut(s) 107, 120, 392, 533, 603, 616
AoxI GGCC 4 cut(s) 210, 350, 690, 1038
ApeKI GCWGC 9 cut(s) 15, 70, 576, 681, 818, 821, 1232, 1303, 1306
ApoI RAATTY 3 cut(s) 200, 878, 1289
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 351
AsuC2I CCSGG 1 cut(s) 1098
AsuHPI GGTGA 5 cut(s) 100, 569, 787, 1056, 1071
BaeGI GKGCMC 1 cut(s) 1103
BamHI GGATCC 2 cut(s) 112, 608
BanI GGYRCC 1 cut(s) 1100
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 858
BbvI GCAGC 9 cut(s) 27, 57, 563, 668, 805, 833, 1219, 1315, 1318
BccI CCATC 3 cut(s) 545, 800, 821
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 5 cut(s) 182, 316, 857, 1029, 1375
BciVI GTATCC 1 cut(s) 1331
BclI TGATCA 2 cut(s) 520, 526
BcnI CCSGG 1 cut(s) 1098
BcoDI GTCTC 1 cut(s) 592
BfmI CTRYAG 4 cut(s) 577, 682, 819, 1073
BfuAI ACCTGC 2 cut(s) 408, 979
BfuI GTATCC 1 cut(s) 1331
Bme1390I CCNGG 6 cut(s) 182, 316, 857, 1029, 1098, 1375
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 4 cut(s) 114, 313, 610, 1102
BmrFI CCNGG 6 cut(s) 182, 316, 857, 1029, 1098, 1375
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 3 cut(s) 33, 722, 1228
BmuI ACTGGG 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 858
BpuMI CCSGG 1 cut(s) 1098
BsaBI GATNNNNATC 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 3 cut(s) 57, 180, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 569
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 2 cut(s) 760, 895
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 5 cut(s) 182, 316, 857, 1029, 1375
BseDI CCNNGG 3 cut(s) 57, 180, 303
BseGI GGATG 4 cut(s) 132, 713, 1051, 1243
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 2 cut(s) 58, 569
BseMI GCAATG 2 cut(s) 760, 895
BseMII CTCAG 2 cut(s) 65, 129
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 2 cut(s) 77, 80
BseSI GKGCMC 1 cut(s) 1103
BseXI GCAGC 9 cut(s) 27, 57, 563, 668, 805, 833, 1219, 1315, 1318
BseYI CCCAGC 1 cut(s) 619
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 4 cut(s) 212, 352, 692, 1040
BshNI GGYRCC 1 cut(s) 1100
BsiEI CGRYCG 1 cut(s) 22
BsiSI CCGG 2 cut(s) 209, 1097
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 2 cut(s) 58, 569
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 4 cut(s) 212, 352, 692, 1040
Bso31I GGTCTC 1 cut(s) 592
Bsp1286I GDGCHC 2 cut(s) 165, 1103
BspACI CCGC 5 cut(s) 22, 166, 493, 675, 1235
BspANI GGCC 4 cut(s) 212, 352, 692, 1040
BspCNI CTCAG 2 cut(s) 66, 130
BspFNI CGCG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 4 cut(s) 114, 313, 610, 1102
BspMAI CTGCAG 4 cut(s) 581, 686, 823, 1077
BspMI ACCTGC 2 cut(s) 408, 979
BspPI GGATC 6 cut(s) 107, 120, 392, 533, 603, 616
BspQI GCTCTTC 1 cut(s) 1005
BspT107I GGYRCC 1 cut(s) 1100
BspTNI GGTCTC 1 cut(s) 592
BsrDI GCAATG 2 cut(s) 760, 895
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 57, 180, 303
BssSI CACGAG 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 158
Bst2UI CCWGG 5 cut(s) 182, 316, 857, 1029, 1375
Bst4CI ACNGT 2 cut(s) 546, 628
Bst6I CTCTTC 3 cut(s) 374, 1005, 1213
BstC8I GCNNGC 3 cut(s) 210, 911, 1265
BstDEI CTNAG 3 cut(s) 74, 138, 450
BstF5I GGATG 4 cut(s) 132, 713, 1051, 1243
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 592
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 3 cut(s) 21, 681, 1238
BstNI CCWGG 5 cut(s) 182, 316, 857, 1029, 1375
BstNSI RCATGY 1 cut(s) 1267
BstSCI CCNGG 6 cut(s) 180, 314, 855, 1027, 1096, 1373
BstSFI CTRYAG 4 cut(s) 577, 682, 819, 1073
BstSLI GKGCMC 1 cut(s) 1103
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 9 cut(s) 27, 57, 563, 668, 805, 833, 1219, 1315, 1318
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 4 cut(s) 112, 384, 608, 1389
BstXI CCANNNNNNTGG 2 cut(s) 619, 724
BstYI RGATCY 4 cut(s) 112, 384, 608, 1389
BsuI GTATCC 1 cut(s) 1331
BsuRI GGCC 4 cut(s) 212, 352, 692, 1040
BtgZI GCGATG 2 cut(s) 345, 564
BtsCI GGATG 4 cut(s) 132, 713, 1051, 1243
BtsIMutI CAGTG 1 cut(s) 542
BveI ACCTGC 2 cut(s) 408, 979
Cac8I GCNNGC 3 cut(s) 210, 911, 1265
CciI TCATGA 1 cut(s) 523
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 351
CviAII CATG 7 cut(s) 223, 434, 524, 668, 773, 924, 1264
DdeI CTNAG 3 cut(s) 74, 138, 450
DraI TTTAAA 1 cut(s) 256
Eam1104I CTCTTC 3 cut(s) 374, 1005, 1213
EarI CTCTTC 3 cut(s) 374, 1005, 1213
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 592
Eco57I CTGAAG 1 cut(s) 223
EcoRII CCWGG 5 cut(s) 180, 314, 855, 1027, 1373
EcoT14I CCWWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 7 cut(s) 226, 437, 527, 671, 776, 927, 1267
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 1002, 1034
FaqI GGGAC 1 cut(s) 491
FatI CATG 7 cut(s) 222, 433, 523, 667, 772, 923, 1263
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 2 cut(s) 520, 526
FokI GGATG 4 cut(s) 119, 700, 1038, 1250
FriOI GRGCYC 1 cut(s) 165
GlaI GCGC 1 cut(s) 107
GsaI CCCAGC 1 cut(s) 623
HaeIII GGCC 4 cut(s) 212, 352, 692, 1040
HapII CCGG 2 cut(s) 209, 1097
HhaI GCGC 1 cut(s) 108
Hin1II CATG 7 cut(s) 226, 437, 527, 671, 776, 927, 1267
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 1 cut(s) 968
HindII GTYRAC 1 cut(s) 968
HpaII CCGG 2 cut(s) 209, 1097
HphI GGTGA 5 cut(s) 100, 569, 787, 1056, 1071
Hpy166II GTNNAC 3 cut(s) 189, 560, 968
Hpy188III TCNNGA 4 cut(s) 116, 388, 524, 1247
Hpy8I GTNNAC 3 cut(s) 189, 560, 968
HpyAV CCTTC 3 cut(s) 302, 403, 1058
HpyCH4III ACNGT 2 cut(s) 546, 628
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 6 cut(s) 579, 684, 821, 984, 1075, 1303
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 681, 1238
HpyF3I CTNAG 3 cut(s) 74, 138, 450
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 7 cut(s) 226, 437, 527, 671, 776, 927, 1267
HspAI GCGC 1 cut(s) 106
KroI GCCGGC 1 cut(s) 208
KroNI GCCGGC 1 cut(s) 210
Ksp22I TGATCA 2 cut(s) 520, 526
LguI GCTCTTC 1 cut(s) 1005
LmnI GCTCC 3 cut(s) 67, 317, 868
Lsp1109I GCAGC 9 cut(s) 27, 57, 563, 668, 805, 833, 1219, 1315, 1318
LweI GCATC 3 cut(s) 33, 722, 1228
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 2 cut(s) 1062, 1077
MflI RGATCY 4 cut(s) 112, 384, 608, 1389
MhlI GDGCHC 2 cut(s) 165, 1103
MluCI AATT 7 cut(s) 200, 457, 878, 985, 1216, 1289, 1354
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 615
MroNI GCCGGC 1 cut(s) 208
MseI TTAA 4 cut(s) 255, 864, 1271, 1353
MspA1I CMGCKG 1 cut(s) 724
MspI CCGG 2 cut(s) 209, 1097
MspR9I CCNGG 6 cut(s) 182, 316, 857, 1029, 1098, 1375
MvaI CCWGG 5 cut(s) 182, 316, 857, 1029, 1375
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 21, 681, 1238
NaeI GCCGGC 1 cut(s) 210
NciI CCSGG 1 cut(s) 1098
NgoMIV GCCGGC 1 cut(s) 208
NlaIII CATG 7 cut(s) 226, 437, 527, 671, 776, 927, 1267
NlaIV GGNNCC 4 cut(s) 114, 313, 610, 1102
NmeAIII GCCGAG 1 cut(s) 328
NmuCI GTSAC 2 cut(s) 1062, 1077
NspI RCATGY 1 cut(s) 1267
PaeI GCATGC 1 cut(s) 1267
PagI TCATGA 1 cut(s) 523
PciSI GCTCTTC 1 cut(s) 1005
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 314
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
Psp1406I AACGTT 1 cut(s) 594
Psp6I CCWGG 5 cut(s) 180, 314, 855, 1027, 1373
PspFI CCCAGC 1 cut(s) 619
PspGI CCWGG 5 cut(s) 180, 314, 855, 1027, 1373
PspN4I GGNNCC 4 cut(s) 114, 313, 610, 1102
PspPI GGNCC 1 cut(s) 351
PstI CTGCAG 4 cut(s) 581, 686, 823, 1077
PsuI RGATCY 4 cut(s) 112, 384, 608, 1389
PvuII CAGCTG 1 cut(s) 724
SapI GCTCTTC 1 cut(s) 1005
SaqAI TTAA 4 cut(s) 255, 864, 1271, 1353
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 6 cut(s) 182, 316, 857, 1029, 1098, 1375
SduI GDGCHC 2 cut(s) 165, 1103
SfaNI GCATC 3 cut(s) 33, 722, 1228
SfcI CTRYAG 4 cut(s) 577, 682, 819, 1073
SphI GCATGC 1 cut(s) 1267
Sse9I AATT 7 cut(s) 200, 457, 878, 985, 1216, 1289, 1354
SsiI CCGC 5 cut(s) 22, 166, 493, 675, 1235
SspI AATATT 1 cut(s) 1142
StyD4I CCNGG 6 cut(s) 180, 314, 855, 1027, 1096, 1373
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 546, 628
TaiI ACGT 1 cut(s) 597
TaqI TCGA 5 cut(s) 123, 286, 740, 807, 950
TasI AATT 7 cut(s) 200, 457, 878, 985, 1216, 1289, 1354
TauI GCSGC 1 cut(s) 495
Tru1I TTAA 4 cut(s) 255, 864, 1271, 1353
Tru9I TTAA 4 cut(s) 255, 864, 1271, 1353
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 2 cut(s) 1062, 1077
TseI GCWGC 9 cut(s) 15, 70, 576, 681, 818, 821, 1232, 1303, 1306
Tsp45I GTSAC 2 cut(s) 1062, 1077
TspDTI ATGAA 8 cut(s) 672, 777, 828, 978, 1040, 1134, 1137, 1200
TspGWI ACGGA 1 cut(s) 1050
TspRI CASTG 1 cut(s) 549
XapI RAATTY 3 cut(s) 200, 878, 1289
XceI RCATGY 1 cut(s) 1267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.