Rw1G026620
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002549
Physical Location & Seq
Reverse (-)
53838693 .. 53841815
3123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026620.1

Sequence Viewer

Length: 1158 bp
ATGATGATGAGCAGCGGCCGCATCACACTTCCTAAGGGTTTCCGATTCCGGCCCTCCGATGAGGAGCTGCTGAGTCATTACTTGGAGAAGAAGAATCAGCGCAAGGATCCCGAAATCGAGGTCATCATCCCTGAGATCAATGTGTGCGACCACGAGCCCCGCGATTTACCAGCCCTGGTGTTCACAAGGGCGGTATTTCTGGACAGGGAGTGGTTCACCATGGCGGACTCTCCGGACATGGAGTGGTACTTCTTCAGTCCGCGAGTTTTTAAACACAGCAAAAGCAAAAGCACTCGGTCCAACAGGACCACGGAGGAAGGCTACTGGAAGAAGCAAGGCAAGGACCGCAGAATCATGACTCGGGCACGTTCTGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCAAACTGATGGAGTGCAAAAAAAACAGAAGACTGACTGGGTTATTCATGAGTATTATCTCACTAAGGCCGATTCTAATGAGCAGATCGGGGACTTTGTTCTCTGCCGCTTGAAGAAAAAGTCCGACAAGTCTGATCATGATAAGCAGGAAGGTCCATGCTACAGTATGGCCTTCATTAATGTTGAAAATCAAGCATCCAAAGAGCTGGGAAATGTTCTTTCGATTTCTGTTGAAGGTCAACCTGATAGCTGCAATTCATCTGATTCCAATATGGTTGAAGAGCTACTTGATGAGCCAGGAAATCAACCTCCGCCACCTCAACTACAGTCACCAATAAAGCTGGGTAATGTTTCACACTCCACCAATGTCCATATTGATGAATGTCGTAAGAGGAAATATCAATTTGCGGATAATGATTCTTCTCCTACTAAAAATAATCATATTTCAACCAATGATGTTGATGAACTAGTTAGCAACACTTCATCTTATTCTGAAAGTCATGCTGCAGATGCTATTCCAAAGGAGTATTCTCAACCAGGAGAAAATCTAGGATCTGATTTATTTCAGTCACTGGAACCACTATCAGTAAACAGAGAACCGAGAGATTTTTCCCATCACAATAATTTTATTGGATGGGATGATTTGCCATATTTAATTGAAGATGACGGAAGTAATCTCAACCAATTGAACTACTTTATTAGTTTGCTATGTTACATCGTTTGTGTGTTGCAAAATTATTTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

385

Amino Acids

44.37

Weight (kDa)

5.47

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 156 1.5e-32 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 162, 262
AccIII TCCGGA 1 cut(s) 232
AclWI GGATC 4 cut(s) 101, 114, 404, 970
AcoI YGGCCR 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 7 cut(s) 523, 596, 644, 689, 858, 1070, 1099
AhlI ACTAGT 1 cut(s) 877
AjnI CCWGG 3 cut(s) 174, 706, 946
AjuI GAANNNNNNNTTGG 2 cut(s) 922, 954
AluBI AGCT 5 cut(s) 67, 616, 660, 694, 751
AluI AGCT 5 cut(s) 67, 616, 660, 694, 751
AlwI GGATC 4 cut(s) 101, 114, 404, 970
AlwNI CAGNNNCTG 1 cut(s) 982
Ama87I CYCGRG 1 cut(s) 360
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 4 cut(s) 16, 50, 477, 579
ApeKI GCWGC 4 cut(s) 12, 67, 660, 914
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AseI ATTAAT 1 cut(s) 588
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 5 cut(s) 51, 297, 306, 343, 563
AsuHPI GGTGA 2 cut(s) 208, 732
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 4 cut(s) 297, 306, 343, 563
AxyI CCTNAGG 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 367
BamHI GGATCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 159
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 446
BbvI GCAGC 4 cut(s) 24, 54, 647, 901
BccI CCATC 3 cut(s) 413, 1032, 1038
BciT130I CCWGG 3 cut(s) 176, 708, 948
BclI TGATCA 1 cut(s) 544
BcuI ACTAGT 1 cut(s) 877
BfaI CTAG 2 cut(s) 878, 959
BfmI CTRYAG 3 cut(s) 571, 734, 915
BisI GCNGC 7 cut(s) 13, 16, 19, 68, 517, 661, 915
BlsI GCNGC 7 cut(s) 14, 17, 20, 69, 518, 662, 916
Bme1390I CCNGG 3 cut(s) 176, 708, 948
Bme18I GGWCC 4 cut(s) 297, 306, 343, 563
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 5 cut(s) 51, 297, 306, 343, 563
BmiI GGNNCC 2 cut(s) 108, 987
BmrFI CCNGG 3 cut(s) 176, 708, 948
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 3 cut(s) 30, 614, 910
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 174, 219, 309
BsaWI WCCGGW 1 cut(s) 232
Bse1I ACTGG 3 cut(s) 329, 452, 987
Bse21I CCTNAGG 1 cut(s) 33
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 3 cut(s) 176, 708, 948
BseDI CCNNGG 3 cut(s) 174, 219, 309
BseGI GGATG 4 cut(s) 126, 605, 1049, 1054
BseMII CTCAG 2 cut(s) 62, 123
BseNI ACTGG 3 cut(s) 329, 452, 987
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 367
BseX3I CGGCCG 1 cut(s) 16
BseXI GCAGC 4 cut(s) 24, 54, 647, 901
BseYI CCCAGC 2 cut(s) 616, 751
Bsh1236I CGCG 2 cut(s) 162, 262
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 4 cut(s) 18, 52, 479, 581
BsiEI CGRYCG 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 2 cut(s) 49, 233
BslFI GGGAC 1 cut(s) 515
BsmFI GGGAC 1 cut(s) 515
BsnI GGCC 4 cut(s) 18, 52, 479, 581
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 159, 367
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 7 cut(s) 106, 135, 381, 396, 495, 544, 962
Bsp19I CCATGG 1 cut(s) 219
BspANI GGCC 4 cut(s) 18, 52, 479, 581
BspCNI CTCAG 2 cut(s) 63, 124
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 2 cut(s) 162, 262
BspHI TCATGA 3 cut(s) 354, 457, 547
BspLI GGNNCC 2 cut(s) 108, 987
BspMAI CTGCAG 1 cut(s) 919
BspPI GGATC 4 cut(s) 101, 114, 404, 970
BspQI GCTCTTC 1 cut(s) 684
BsrI ACTGG 3 cut(s) 329, 452, 987
BssECI CCNNGG 3 cut(s) 174, 219, 309
BssMI GATC 7 cut(s) 106, 135, 381, 396, 495, 544, 962
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 3 cut(s) 176, 708, 948
Bst4CI ACNGT 2 cut(s) 575, 738
Bst6I CTCTTC 2 cut(s) 386, 684
BstDEI CTNAG 4 cut(s) 33, 71, 132, 474
BstDSI CCRYGG 2 cut(s) 219, 309
BstF5I GGATG 4 cut(s) 126, 605, 1049, 1054
BstFNI CGCG 2 cut(s) 162, 262
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 7 cut(s) 109, 138, 384, 399, 498, 547, 965
BstMBI GATC 7 cut(s) 106, 135, 381, 396, 495, 544, 962
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 3 cut(s) 18, 345, 920
BstNI CCWGG 3 cut(s) 176, 708, 948
BstSCI CCNGG 3 cut(s) 174, 706, 946
BstSFI CTRYAG 3 cut(s) 571, 734, 915
BstSLI GKGCMC 1 cut(s) 367
BstUI CGCG 2 cut(s) 162, 262
BstV1I GCAGC 4 cut(s) 24, 54, 647, 901
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 3 cut(s) 106, 396, 962
BstXI CCANNNNNNTGG 2 cut(s) 419, 616
BstYI RGATCY 3 cut(s) 106, 396, 962
BstZI CGGCCG 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 4 cut(s) 18, 52, 479, 581
BtgI CCRYGG 2 cut(s) 219, 309
BtsCI GGATG 4 cut(s) 126, 605, 1049, 1054
BtsIMutI CAGTG 1 cut(s) 980
CaiI CAGNNNCTG 1 cut(s) 982
CciI TCATGA 3 cut(s) 354, 457, 547
CciNI GCGGCCGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 5 cut(s) 51, 297, 306, 343, 563
Csp6I GTAC 1 cut(s) 247
CviAII CATG 7 cut(s) 220, 238, 355, 458, 548, 567, 911
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 4 cut(s) 33, 71, 132, 474
DpnI GATC 7 cut(s) 108, 137, 383, 398, 497, 546, 964
DpnII GATC 7 cut(s) 106, 135, 381, 396, 495, 544, 962
DraI TTTAAA 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 16
EagI CGGCCG 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 386, 684
EarI CTCTTC 2 cut(s) 386, 684
EciI GGCGGA 2 cut(s) 239, 711
EclXI CGGCCG 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 4 cut(s) 297, 306, 343, 563
Eco52I CGGCCG 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 360
EcoRII CCWGG 3 cut(s) 174, 706, 946
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 7 cut(s) 223, 241, 358, 461, 551, 570, 914
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 681, 713
FaqI GGGAC 1 cut(s) 515
FatI CATG 7 cut(s) 219, 237, 354, 457, 547, 566, 910
FauI CCCGC 1 cut(s) 167
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 7 cut(s) 13, 16, 19, 68, 517, 661, 915
FokI GGATG 4 cut(s) 113, 592, 1056, 1061
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 7 cut(s) 13, 16, 19, 68, 517, 661, 915
FspBI CTAG 2 cut(s) 878, 959
GlaI GCGC 1 cut(s) 101
GluI GCNGC 7 cut(s) 13, 16, 19, 68, 517, 661, 915
GsaI CCCAGC 2 cut(s) 620, 755
HaeIII GGCC 4 cut(s) 18, 52, 479, 581
HapII CCGG 2 cut(s) 49, 233
HhaI GCGC 1 cut(s) 102
Hin1II CATG 7 cut(s) 223, 241, 358, 461, 551, 570, 914
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 650
HindII GTYRAC 1 cut(s) 650
HinfI GANTC 9 cut(s) 45, 73, 94, 227, 351, 358, 482, 674, 827
HpaII CCGG 2 cut(s) 49, 233
HphI GGTGA 2 cut(s) 208, 732
Hpy166II GTNNAC 4 cut(s) 183, 216, 650, 1000
Hpy188I TCNGA 8 cut(s) 44, 58, 373, 535, 544, 673, 904, 967
Hpy188III TCNNGA 7 cut(s) 110, 200, 233, 355, 400, 458, 548
Hpy8I GTNNAC 4 cut(s) 183, 216, 650, 1000
HpyAV CCTTC 5 cut(s) 311, 415, 554, 592, 638
HpyCH4III ACNGT 2 cut(s) 575, 738
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 427, 663, 917, 1141
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 345, 920
HpyF3I CTNAG 4 cut(s) 33, 71, 132, 474
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 7 cut(s) 223, 241, 358, 461, 551, 570, 914
HspAI GCGC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 7 cut(s) 106, 135, 381, 396, 495, 544, 962
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 4 cut(s) 24, 54, 647, 901
LweI GCATC 3 cut(s) 30, 614, 910
MaeI CTAG 2 cut(s) 878, 959
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 3 cut(s) 738, 978, 1121
MalI GATC 7 cut(s) 108, 137, 383, 398, 497, 546, 964
MboI GATC 7 cut(s) 106, 135, 381, 396, 495, 544, 962
MfeI CAATTG 1 cut(s) 1094
MflI RGATCY 3 cut(s) 106, 396, 962
MhlI GDGCHC 2 cut(s) 159, 367
MluCI AATT 6 cut(s) 664, 812, 1033, 1065, 1094, 1144
MlyI GAGTC 3 cut(s) 82, 221, 352
MmeI TCCRAC 2 cut(s) 324, 558
MnlI CCTC 8 cut(s) 55, 64, 112, 307, 387, 729, 738, 795
MroI TCCGGA 1 cut(s) 232
MseI TTAA 4 cut(s) 270, 588, 1064, 1156
MslI CAYNNNNRTG 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 2 cut(s) 49, 233
MspR9I CCNGG 3 cut(s) 176, 708, 948
MunI CAATTG 1 cut(s) 1094
MvaI CCWGG 3 cut(s) 176, 708, 948
MvnI CGCG 2 cut(s) 162, 262
MwoI GCNNNNNNNGC 3 cut(s) 18, 345, 920
NcoI CCATGG 1 cut(s) 219
NdeII GATC 7 cut(s) 106, 135, 381, 396, 495, 544, 962
NlaIII CATG 7 cut(s) 223, 241, 358, 461, 551, 570, 914
NlaIV GGNNCC 2 cut(s) 108, 987
NmuCI GTSAC 2 cut(s) 738, 978
NotI GCGGCCGC 1 cut(s) 16
PagI TCATGA 3 cut(s) 354, 457, 547
PciSI GCTCTTC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 6 cut(s) 45, 94, 351, 482, 674, 827
PkrI GCNGC 7 cut(s) 14, 17, 20, 69, 518, 662, 916
PleI GAGTC 3 cut(s) 81, 221, 352
PpsI GAGTC 3 cut(s) 81, 221, 352
PshBI ATTAAT 1 cut(s) 588
Psp6I CCWGG 3 cut(s) 174, 706, 946
PspFI CCCAGC 2 cut(s) 616, 751
PspGI CCWGG 3 cut(s) 174, 706, 946
PspN4I GGNNCC 2 cut(s) 108, 987
PspPI GGNCC 5 cut(s) 51, 297, 306, 343, 563
PstI CTGCAG 1 cut(s) 919
PstNI CAGNNNCTG 1 cut(s) 982
PsuI RGATCY 3 cut(s) 106, 396, 962
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 786
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 4 cut(s) 270, 588, 1064, 1156
SatI GCNGC 7 cut(s) 13, 16, 19, 68, 517, 661, 915
Sau3AI GATC 7 cut(s) 106, 135, 381, 396, 495, 544, 962
Sau96I GGNCC 5 cut(s) 51, 297, 306, 343, 563
SchI GAGTC 3 cut(s) 82, 221, 352
ScrFI CCNGG 3 cut(s) 176, 708, 948
SduI GDGCHC 2 cut(s) 159, 367
SfaNI GCATC 3 cut(s) 30, 614, 910
SfcI CTRYAG 3 cut(s) 571, 734, 915
SinI GGWCC 4 cut(s) 297, 306, 343, 563
SmiMI CAYNNNNRTG 1 cut(s) 786
SpeI ACTAGT 1 cut(s) 877
Sse9I AATT 6 cut(s) 664, 812, 1033, 1065, 1094, 1144
SspMI CTAG 2 cut(s) 878, 959
StyD4I CCNGG 3 cut(s) 174, 706, 946
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 575, 738
TaiI ACGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 117, 632
TaqII GACCGA 1 cut(s) 285
TasI AATT 6 cut(s) 664, 812, 1033, 1065, 1094, 1144
TauI GCSGC 3 cut(s) 18, 21, 519
TfiI GAWTC 6 cut(s) 45, 94, 351, 482, 674, 827
Tru1I TTAA 4 cut(s) 270, 588, 1064, 1156
Tru9I TTAA 4 cut(s) 270, 588, 1064, 1156
TscAI CASTG 1 cut(s) 987
TseFI GTSAC 2 cut(s) 738, 978
TseI GCWGC 4 cut(s) 12, 67, 660, 914
Tsp45I GTSAC 2 cut(s) 738, 978
TspDTI ATGAA 6 cut(s) 446, 574, 657, 804, 882, 888
TspGWI ACGGA 2 cut(s) 326, 1092
TspRI CASTG 1 cut(s) 987
VpaK11BI GGWCC 4 cut(s) 297, 306, 343, 563
VspI ATTAAT 1 cut(s) 588
XspI CTAG 2 cut(s) 878, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.