Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002549

Physical Location & Seq

Genomic Coordinates Reverse (-)

40466887 .. 40467600

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0289500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGATTCAAATGTGGTGGTCAGAAGCTCATCACCTCCGTCCCATGAAGGAATCAGAAAGGTACGGACAGCTATAAGGCTGTTCTTAGTGTTGGTGGTGTTTGGAGGGTGTGTTTTGATCTATGTCATGATGCCCACAAACACATATAGGCAAATATGGCTGCCTCGAATCCGAGCTGAGGCCGGCTCAAGTACCTATTTTGGAGCACAAGGTTCAACTCTTCTGTTTTACACATTTCCCATTATGTTCATTGCTGTGATGGGTTGTGTGTATCTCCATCTGGGAAAGAAGATTAATGATTATAAAATGGAAAGCAGTGATGGCAAAACGAACCGTATAGCTGTGTGGAAACAACCCATGCTGGTGAAAGGTCCCTTAGGCATTGTTTCTGGGATAGAGTTCACCTTCTTCATCATGTTCATTGCACTCCTAATTTGGTCTATCTCCACGTACTTGACCAACGGTTTTAAGATAATCACACCACAATCCTCGGCAAAGAGCCATGAAAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

171

Amino Acids

19.2

Weight (kDa)

9.86

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g17950 FvH4_7g17950 FvH4_7g17950 FvH4_7g18000 FvH4_7g18000 FvH4_7g18210 FvH4_7g18210 FvH4_7g18260 FvH4_7g18260
rosa_chinensis	RchiOBHm_Chr1g0333721 RchiOBHm_Chr1g0361391 RchiOBHm_Chr1g0361441 RchiOBHm_Chr1g0361471 RchiOBHm_Chr1g0361531
rosa_laevigata	RLG00000014879 RLG00000027718 RLG00000027720 RLG00000029533
rosa_multiflora	Rmu_sc0002119.1_g000005 Rmu_sc0002119.1_g000006 Rmu_sc0002119.1_g000022 Rmu_sc0003693.1_g000011 Rmu_sc0006417.1_g000010 Rmu_sc0010384.1_g000005 Rmu_sc0042164.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294940 Rroxscaffold_4G00294980 Rroxscaffold_4G00294990
rosa_rugosa	Rorug01G0111500 Rorug01G0289400 Rorug01G0289500 Rorug01G0289600 Rorug01G0289600 Rorug01G0289700 Rorug01G0289900
rosa_samantha	Rh1AG133600 Rh1AG300200
rosa_wichuraiana	Rw1G011160 Rw1G026560 Rw1G026600 Rw1G026620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AfaI	GTAC	3 cut(s)	63, 193, 452
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	9, 216
AluBI	AGCT	4 cut(s)	27, 71, 176, 341
AluI	AGCT	4 cut(s)	27, 71, 176, 341
Alw21I	GWGCWC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	160
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	24, 376, 394
AvaII	GGWCC	1 cut(s)	371
AxyI	CCTNAGG	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	208
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	3 cut(s)	253, 285, 314
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	373
BmsI	GCATC	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	489
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	182
Bse21I	CCTNAGG	1 cut(s)	376
Bse3DI	GCAATG	2 cut(s)	249, 420
BseDI	CCNNGG	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	2 cut(s)	249, 420
BseMII	CTCAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	147
BshFI	GGCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	25, 357
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmFI	GGGAC	2 cut(s)	25, 357
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	373
BsrDI	GCAATG	2 cut(s)	249, 420
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	335, 464
Bst6I	CTCTTC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	3 cut(s)	85, 177, 376
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 321
BstV1I	GCAGC	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	184
CciI	TCATGA	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	3 cut(s)	62, 192, 451
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	5 cut(s)	44, 127, 358, 415, 503
CviJI	RGCY	9 cut(s)	27, 71, 79, 160, 176, 182, 186, 341, 501
CviKI_1	RGCY	9 cut(s)	27, 71, 79, 160, 176, 182, 186, 341, 501
CviQI	GTAC	3 cut(s)	62, 192, 451
DdeI	CTNAG	3 cut(s)	85, 177, 376
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	371
Eco81I	CCTNAGG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	371
FaeI	CATG	5 cut(s)	47, 130, 361, 418, 506
FaqI	GGGAC	2 cut(s)	25, 357
FatI	CATG	5 cut(s)	43, 126, 357, 414, 502
Fnu4HI	GCNGC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	161
GluI	GCNGC	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	5 cut(s)	47, 130, 361, 418, 506
HinfI	GANTC	3 cut(s)	5, 51, 168
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	3 cut(s)	24, 376, 394
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	3 cut(s)	23, 56, 173
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	2 cut(s)	41, 415
HpyCH4III	ACNGT	2 cut(s)	335, 464
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 321
HpyF3I	CTNAG	3 cut(s)	85, 177, 376
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	5 cut(s)	47, 130, 361, 418, 506
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	4 cut(s)	196, 266, 347, 375
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	449
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	3 cut(s)	212, 301, 400
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	1 cut(s)	432
MnlI	CCTC	5 cut(s)	45, 98, 172, 174, 499
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	2 cut(s)	294, 468
MslI	CAYNNNNRTG	2 cut(s)	254, 362
MspI	CCGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	157, 321
NaeI	GCCGGC	1 cut(s)	184
NdeII	GATC	1 cut(s)	117
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	5 cut(s)	47, 130, 361, 418, 506
NlaIV	GGNNCC	1 cut(s)	373
NmeAIII	GCCGAG	1 cut(s)	470
PagI	TCATGA	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	5, 51, 168
PkrI	GCNGC	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	450
PpuMI	RGGWCCY	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
RsaI	GTAC	3 cut(s)	63, 193, 452
RsaNI	GTAC	3 cut(s)	62, 192, 451
RseI	CAYNNNNRTG	2 cut(s)	254, 362
SaqAI	TTAA	2 cut(s)	294, 468
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	254, 362
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	335, 464
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	432
TfiI	GAWTC	3 cut(s)	5, 51, 168
Tru1I	TTAA	2 cut(s)	294, 468
Tru9I	TTAA	2 cut(s)	294, 468
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	4 cut(s)	60, 238, 400, 409
TspGWI	ACGGA	2 cut(s)	27, 79
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	371
VspI	ATTAAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.