Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Reverse (-)

31830798 .. 31832481

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1178200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGCAAACGAGGCCGCAAGCCCAAAACCCCCACCTGGGAAACCCTAGATTCACCCGCCACCGCCATCGCATCGCCACCGCCACCGCCGGTTACGACGGCCACAACCGCAGTCGACGACGTATTCTCCGTCAGCAACGTCGAGATTATCGAGCAGCCTCAATCCTCTCAGCCCCAACACGGAGGTCGCCGCCGCGGTCGACCCAAGAAGCTCCAAAAGCTCTCCGACAAGCCCGAGGCCATGGCCCCTTCCCGGAGGATCCCTCGGGCTGTCGACAATGGCGACCACAAGGGCGCGGTGGGCCCGTTTGTGACGGTTTCGGATCCTGGTGAGGCGTGGGAGGCTGTGGCGAGGGTGGTGCCCGCCATGGATGCGGTTGTGAAGGTGTTTTGTACGCATACAGAGCCGAATTTCTCGCTGCCATGGCAGAGGAAGAGGCAGTACAGCTCGAGCAGCAGTGGGTTTGTGATTGGTGGGAGGAGGGTGCTGACCAATGCGCACTCTGTGGAGCATTATACGCAGGTCAAGCTCAAGAAGCGTGGCTCTGATACTAAGTACTTGGCTACTGTTCTCGCCATTGGCACCGAGTGCGATATTGGAAGTGATTTATTTTTGGAAGGGAAGGAGAACTTCCATCGTAGGGGGTGTTATGGAGTAAAACAGTTAGATATAAGGGATATAGAAAAGCTCAGAATAAATCACGTAGTAAATGAAGGCATAGGGGATGAAAAACTAATGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

248

Amino Acids

27.2

Weight (kDa)

9.54

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	498
Acc36I	ACCTGC	1 cut(s)	511
AccB1I	GGYRCC	2 cut(s)	358, 581
AccI	GTMKAC	3 cut(s)	114, 199, 273
AccII	CGCG	2 cut(s)	195, 296
AclWI	GGATC	4 cut(s)	253, 266, 317, 330
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	409
AdeI	CACNNNGTG	2 cut(s)	505, 588
AfaI	GTAC	3 cut(s)	394, 443, 557
AfiI	CCNNNNNNNGG	5 cut(s)	36, 37, 179, 252, 640
AjnI	CCWGG	2 cut(s)	35, 325
AluBI	AGCT	5 cut(s)	211, 220, 447, 529, 688
AluI	AGCT	5 cut(s)	211, 220, 447, 529, 688
AlwI	GGATC	4 cut(s)	253, 266, 317, 330
Ama87I	CYCGRG	3 cut(s)	233, 264, 448
AoxI	GGCC	5 cut(s)	13, 99, 237, 243, 301
ApaI	GGGCCC	1 cut(s)	305
ApeKI	GCWGC	3 cut(s)	154, 418, 453
ApoI	RAATTY	1 cut(s)	409
AspLEI	GCGC	2 cut(s)	296, 499
AspS9I	GGNCC	3 cut(s)	244, 301, 302
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	45, 341
AvaI	CYCGRG	3 cut(s)	233, 264, 448
BaeGI	GKGCMC	2 cut(s)	305, 363
BamHI	GGATCC	2 cut(s)	258, 322
BanI	GGYRCC	2 cut(s)	358, 581
BanII	GRGCYC	1 cut(s)	305
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BbvI	GCAGC	3 cut(s)	166, 405, 465
BccI	CCATC	2 cut(s)	74, 642
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	2 cut(s)	37, 327
BcnI	CCSGG	1 cut(s)	253
BfaI	CTAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	511
BisI	GCNGC	6 cut(s)	16, 155, 190, 193, 419, 454
BlsI	GCNGC	6 cut(s)	17, 156, 191, 194, 420, 455
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	3 cut(s)	37, 253, 327
BmeT110I	CYCGRG	3 cut(s)	233, 264, 448
BmgT120I	GGNCC	3 cut(s)	244, 301, 302
BmiI	GGNNCC	6 cut(s)	246, 260, 303, 324, 360, 583
BmrFI	CCNGG	3 cut(s)	37, 253, 327
BmsI	GCATC	2 cut(s)	80, 361
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	703
BsaJI	CCNNGG	7 cut(s)	36, 193, 234, 240, 263, 366, 422
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 37, 179, 252, 640
Bse118I	RCCGGY	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	37, 327
BseDI	CCNNGG	7 cut(s)	36, 193, 234, 240, 263, 366, 422
BseGI	GGATG	2 cut(s)	376, 730
BseLI	CCNNNNNNNGG	5 cut(s)	36, 37, 179, 252, 640
BseMII	CTCAG	2 cut(s)	182, 703
BseRI	GAGGAG	1 cut(s)	493
BseSI	GKGCMC	2 cut(s)	305, 363
BseXI	GCAGC	3 cut(s)	166, 405, 465
Bsh1236I	CGCG	2 cut(s)	195, 296
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	5 cut(s)	15, 101, 239, 245, 303
BshNI	GGYRCC	2 cut(s)	358, 581
BsiEI	CGRYCG	1 cut(s)	199
BsiHKCI	CYCGRG	3 cut(s)	233, 264, 448
BsiSI	CCGG	2 cut(s)	89, 253
BslI	CCNNNNNNNGG	5 cut(s)	36, 37, 179, 252, 640
BsnI	GGCC	5 cut(s)	15, 101, 239, 245, 303
BsoBI	CYCGRG	3 cut(s)	233, 264, 448
Bsp120I	GGGCCC	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	305, 363
Bsp143I	GATC	2 cut(s)	258, 322
Bsp19I	CCATGG	3 cut(s)	240, 366, 422
BspANI	GGCC	5 cut(s)	15, 101, 239, 245, 303
BspCNI	CTCAG	2 cut(s)	181, 702
BspFNI	CGCG	2 cut(s)	195, 296
BspLI	GGNNCC	6 cut(s)	246, 260, 303, 324, 360, 583
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	4 cut(s)	253, 266, 317, 330
BspT107I	GGYRCC	2 cut(s)	358, 581
BsrFI	RCCGGY	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	7 cut(s)	36, 193, 234, 240, 263, 366, 422
BssMI	GATC	2 cut(s)	258, 322
BssT1I	CCWWGG	3 cut(s)	240, 366, 422
Bst2UI	CCWGG	2 cut(s)	37, 327
Bst4CI	ACNGT	3 cut(s)	316, 568, 663
Bst6I	CTCTTC	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	588
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	2 cut(s)	20, 363
BstDEI	CTNAG	3 cut(s)	168, 552, 689
BstDSI	CCRYGG	4 cut(s)	193, 240, 366, 422
BstF5I	GGATG	2 cut(s)	376, 730
BstFNI	CGCG	2 cut(s)	195, 296
BstHHI	GCGC	2 cut(s)	296, 499
BstKTI	GATC	2 cut(s)	261, 325
BstMBI	GATC	2 cut(s)	258, 322
BstMCI	CGRYCG	1 cut(s)	199
BstNI	CCWGG	2 cut(s)	37, 327
BstSCI	CCNGG	3 cut(s)	35, 251, 325
BstSLI	GKGCMC	2 cut(s)	305, 363
BstUI	CGCG	2 cut(s)	195, 296
BstV1I	GCAGC	3 cut(s)	166, 405, 465
BstX2I	RGATCY	2 cut(s)	258, 322
BstYI	RGATCY	2 cut(s)	258, 322
BsuRI	GGCC	5 cut(s)	15, 101, 239, 245, 303
BtgI	CCRYGG	4 cut(s)	193, 240, 366, 422
BtgZI	GCGATG	2 cut(s)	52, 57
BtsCI	GGATG	2 cut(s)	376, 730
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	463
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	20, 363
CfoI	GCGC	2 cut(s)	296, 499
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	3 cut(s)	244, 301, 302
Cfr42I	CCGCGG	1 cut(s)	196
Csp6I	GTAC	3 cut(s)	393, 442, 556
CspCI	CAANNNNNGTGG	2 cut(s)	520, 555
CviAII	CATG	3 cut(s)	241, 367, 423
CviQI	GTAC	3 cut(s)	393, 442, 556
DdeI	CTNAG	3 cut(s)	168, 552, 689
DpnI	GATC	2 cut(s)	260, 324
DpnII	GATC	2 cut(s)	258, 322
DraIII	CACNNNGTG	2 cut(s)	505, 588
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Eco130I	CCWWGG	3 cut(s)	240, 366, 422
Eco24I	GRGCYC	1 cut(s)	305
Eco88I	CYCGRG	3 cut(s)	233, 264, 448
EcoRII	CCWGG	2 cut(s)	35, 325
EcoT14I	CCWWGG	3 cut(s)	240, 366, 422
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	3 cut(s)	240, 366, 422
FaeI	CATG	3 cut(s)	244, 370, 426
FaiI	YATR	9 cut(s)	242, 368, 399, 424, 516, 651, 671, 680, 719
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FatI	CATG	3 cut(s)	240, 366, 422
FauI	CCCGC	2 cut(s)	64, 370
FblI	GTMKAC	3 cut(s)	114, 199, 273
Fnu4HI	GCNGC	6 cut(s)	16, 155, 190, 193, 419, 454
FokI	GGATG	2 cut(s)	383, 737
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	6 cut(s)	16, 155, 190, 193, 419, 454
FspAI	RTGCGCAY	1 cut(s)	498
FspBI	CTAG	1 cut(s)	47
FspI	TGCGCA	1 cut(s)	498
GlaI	GCGC	2 cut(s)	295, 498
GluI	GCNGC	6 cut(s)	16, 155, 190, 193, 419, 454
HaeIII	GGCC	5 cut(s)	15, 101, 239, 245, 303
HapII	CCGG	2 cut(s)	89, 253
HhaI	GCGC	2 cut(s)	296, 499
Hin1II	CATG	3 cut(s)	244, 370, 426
Hin6I	GCGC	2 cut(s)	294, 497
HinP1I	GCGC	2 cut(s)	294, 497
HincII	GTYRAC	3 cut(s)	115, 200, 274
HindII	GTYRAC	3 cut(s)	115, 200, 274
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	2 cut(s)	89, 253
HphI	GGTGA	2 cut(s)	45, 341
Hpy166II	GTNNAC	3 cut(s)	115, 200, 274
Hpy188I	TCNGA	4 cut(s)	226, 322, 547, 692
Hpy188III	TCNNGA	2 cut(s)	142, 532
Hpy8I	GTNNAC	3 cut(s)	115, 200, 274
Hpy99I	CGWCG	4 cut(s)	100, 119, 122, 143
HpyAV	CCTTC	5 cut(s)	258, 376, 611, 616, 707
HpyCH4III	ACNGT	3 cut(s)	316, 568, 663
HpyCH4IV	ACGT	3 cut(s)	120, 138, 702
HpyCH4V	TGCA	1 cut(s)	739
HpyF3I	CTNAG	3 cut(s)	168, 552, 689
HpySE526I	ACGT	3 cut(s)	120, 138, 702
Hsp92II	CATG	3 cut(s)	244, 370, 426
HspAI	GCGC	2 cut(s)	294, 497
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	258, 322
LmnI	GCTCC	2 cut(s)	216, 508
LpnPI	CCDG	7 cut(s)	22, 49, 102, 266, 312, 339, 506
Lsp1109I	GCAGC	3 cut(s)	166, 405, 465
LweI	GCATC	2 cut(s)	80, 361
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	3 cut(s)	120, 138, 702
MaeIII	GTNAC	2 cut(s)	91, 310
MalI	GATC	2 cut(s)	260, 324
MboI	GATC	2 cut(s)	258, 322
MboII	GAAGA	1 cut(s)	445
MflI	RGATCY	2 cut(s)	258, 322
MhlI	GDGCHC	2 cut(s)	305, 363
MluCI	AATT	1 cut(s)	409
MmeI	TCCRAC	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	2 cut(s)	89, 253
MspR9I	CCNGG	3 cut(s)	37, 253, 327
MvaI	CCWGG	2 cut(s)	37, 327
MvnI	CGCG	2 cut(s)	195, 296
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	3 cut(s)	240, 366, 422
NdeII	GATC	2 cut(s)	258, 322
NlaIII	CATG	3 cut(s)	244, 370, 426
NlaIV	GGNNCC	6 cut(s)	246, 260, 303, 324, 360, 583
NmuCI	GTSAC	1 cut(s)	310
NsbI	TGCGCA	1 cut(s)	498
PaeR7I	CTCGAG	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 147, 279
PfeI	GAWTC	1 cut(s)	50
PfoI	TCCNGGA	1 cut(s)	251
PkrI	GCNGC	6 cut(s)	17, 156, 191, 194, 420, 455
Ppu21I	YACGTR	1 cut(s)	703
Psp6I	CCWGG	2 cut(s)	35, 325
PspGI	CCWGG	2 cut(s)	35, 325
PspN4I	GGNNCC	6 cut(s)	246, 260, 303, 324, 360, 583
PspOMI	GGGCCC	1 cut(s)	301
PspPI	GGNCC	3 cut(s)	244, 301, 302
PspXI	VCTCGAGB	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	258, 322
RsaI	GTAC	3 cut(s)	394, 443, 557
RsaNI	GTAC	3 cut(s)	393, 442, 556
SacII	CCGCGG	1 cut(s)	196
SalI	GTCGAC	3 cut(s)	113, 198, 272
SatI	GCNGC	6 cut(s)	16, 155, 190, 193, 419, 454
Sau3AI	GATC	2 cut(s)	258, 322
Sau96I	GGNCC	3 cut(s)	244, 301, 302
ScaI	AGTACT	1 cut(s)	557
ScrFI	CCNGG	3 cut(s)	37, 253, 327
SduI	GDGCHC	2 cut(s)	305, 363
SfaNI	GCATC	2 cut(s)	80, 361
Sfr274I	CTCGAG	1 cut(s)	448
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	448
SmlI	CTYRAG	2 cut(s)	448, 530
SmoI	CTYRAG	2 cut(s)	448, 530
Sse9I	AATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	35, 251, 325
StyI	CCWWGG	3 cut(s)	240, 366, 422
TaaI	ACNGT	3 cut(s)	316, 568, 663
TaiI	ACGT	3 cut(s)	123, 141, 705
TaqI	TCGA	6 cut(s)	114, 141, 150, 199, 273, 449
TasI	AATT	1 cut(s)	409
TatI	WGTACW	2 cut(s)	441, 555
TauI	GCSGC	3 cut(s)	18, 192, 195
TfiI	GAWTC	1 cut(s)	50
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	154, 418, 453
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	726, 741
TspGWI	ACGGA	2 cut(s)	118, 195
TspRI	CASTG	1 cut(s)	463
XapI	RAATTY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	448
XmiI	GTMKAC	3 cut(s)	114, 199, 273
XspI	CTAG	1 cut(s)	47
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.