RchiOBHm_Chr7g0194051

protease Do-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
12269984 .. 12273653
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17355

Sequence Viewer

Length: 1395 bp
ATGGACGCGGTGGTGAAGGTGTTCTGCACGCACACCGAGCCGAATTTCTCGCTGCCGTGGCAGCGAAAGAGGCAGTACAGCTCGAGCAGCAGTGGGTTTGTGATTGGCGGCAGGAGGGTGCTCACCAATGCTCACTCAGTGGAGCATTACACCCAGGTCAAGCTCAAGAAGCGCGGCTCCGATACCAAGTACTTGGCCACTGTTCTCGCTATTGGCACCGAGTGTGACATTGCGATGCTTACGGTTGATGATGATGAGTTTTGGGAAGGTGTGTCACCGGTGGAGTTTGGGGAGTTGCCTGCGCTGCAGGATGCTGTTACTGTCGTGGGTTATCCGATTGGGGGAGACACGATTTCAGTGACGAGTGGCGTTGTATCGCGGATTGAGATTCTGTCGTATGTTCATGGGTCGACTGAACTGCTAGGTTTGCAGATAGATGCTGCGATCAACTCTGGAAACTCGGGTGGGCCTGCTTTTAATGATAAAGGAACTTGTGTGGGTATTGCATTTCAGTCCCTAAAGCATGAGGATGCGGAGAATATTGGTTATGTCATACCCACACCAGTAATAATGCACTTCATCAAAGATTATGAGAAGAATGGAGCATATACAGGATTTCCAATTCTTGGGATTGAGTGGCAGAAAATGGAAAATCCTGATTTGCGTACATCAATGGGGATGAAACCTGACCAAAAGGGTGTTCGTATCAGAAGAATTGATCCCACTGCTCTGGAATCTCAGGTTTTGAAGCCATCTGATATTCTTCTCAGCTTTGATGGAGTTAATATTGCCAATGATGGAACAGTTCCTTTTCGGCATGGAGAACGCATAGGTTTTAGTTACCTCATATCCCAGAAATATACTGGGGATAACTCAAAGGTTAAAGTTCTGCGCAATTCTGAGATTCTCAGTTTTGATATAAAACTTGCATCCCACAAAAGACTAATTCCAGCACACATCAAGGGCAGACCTCCTTCATATTATATTGTTGCAGGATTTGTTTTCACAGCTGTATCTGTTCCCTATCTTCGATCCGAGTATGGAAAGGATTATGAGTTTGAAGCTCCTGTCAAACTTCTGGACAAAATGCTGCATTCCTTGCGGCAGTCACCGGATGAGCAGCTTGTAGTGGTTTCTCAGGTGCTTGTGGCTGATATCAACATTGGGTATGAAGACATAGTTAACACGCAGGTTCTTGCTTTTAATGGTAAGCCTGTGAAGAATCTAAAAAGCTTGGCCAGCATGGTAGAGAACTGTGAGGATGAGTTTTTGAAATTTGATTTAGAATACCAACAGATGGCAGTCCTCCGAACAAATACTGCAAAAGCAGCTACCCTAGATATTCTTGCTACACACTGCATACCGTCAGCAATGTCTGATGATTTGAAGACTTGA

Protein Analysis

464

Amino Acids

51.22

Weight (kDa)

5.72

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin PF00089 13 - 193 3e-19 Trypsin
Trypsin_2 PF13365 31 - 168 1.2e-20 Trypsin-like peptidase domain
PDZ_3 PF17815 316 - 461 1.3e-48 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 1180
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 2 cut(s) 626, 1297
AccI GTMKAC 1 cut(s) 410
AccII CGCG 3 cut(s) 8, 174, 379
AciI CCGC 6 cut(s) 8, 108, 174, 379, 533, 1102
AclWI GGATC 2 cut(s) 713, 1026
AcoI YGGCCR 2 cut(s) 195, 1236
AcsI RAATTY 2 cut(s) 43, 1274
AdeI CACNNNGTG 2 cut(s) 139, 222
AfaI GTAC 3 cut(s) 77, 191, 667
AfiI CCNNNNNNNGG 3 cut(s) 341, 626, 1297
AgeI ACCGGT 1 cut(s) 277
AgsI TTSAA 4 cut(s) 748, 1061, 1273, 1387
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 2 cut(s) 684, 716
AluBI AGCT 8 cut(s) 81, 163, 771, 1010, 1064, 1123, 1233, 1331
AluI AGCT 8 cut(s) 81, 163, 771, 1010, 1064, 1123, 1233, 1331
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 2 cut(s) 713, 1026
Ama87I CYCGRG 2 cut(s) 82, 460
AoxI GGCC 3 cut(s) 195, 467, 1236
ApeKI GCWGC 8 cut(s) 52, 61, 87, 304, 440, 1090, 1120, 1328
ApoI RAATTY 2 cut(s) 43, 1274
AsiGI ACCGGT 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 3 cut(s) 174, 304, 894
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 4 cut(s) 25, 115, 267, 1101
AvaI CYCGRG 2 cut(s) 82, 460
BaeI ACNNNNGTAYC 2 cut(s) 996, 1029
BalI TGGCCA 2 cut(s) 197, 1238
BanI GGYRCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 1179
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 8 cut(s) 39, 73, 99, 291, 427, 1077, 1132, 1340
BccI CCATC 4 cut(s) 760, 770, 791, 1291
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 2 cut(s) 422, 1337
BfmI CTRYAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 1180
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 155
BmeT110I CYCGRG 2 cut(s) 82, 460
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 2 cut(s) 178, 217
BmrFI CCNGG 1 cut(s) 155
BmrI ACTGGG 1 cut(s) 873
BmsI GCATC 5 cut(s) 225, 301, 427, 520, 938
BmuI ACTGGG 1 cut(s) 873
BpiI GAAGAC 1 cut(s) 1179
BpuEI CTTGAG 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 56, 153
BsaWI WCCGGW 2 cut(s) 277, 1111
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 626, 1297
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 563, 868
Bse3DI GCAATG 2 cut(s) 228, 1377
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 56, 153
BseGI GGATG 6 cut(s) 316, 535, 684, 929, 1120, 1267
BseLI CCNNNNNNNGG 3 cut(s) 341, 626, 1297
BseMI GCAATG 2 cut(s) 228, 1377
BseMII CTCAG 6 cut(s) 150, 752, 781, 891, 922, 1151
BseNI ACTGG 2 cut(s) 563, 868
BseXI GCAGC 8 cut(s) 39, 73, 99, 291, 427, 1077, 1132, 1340
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 3 cut(s) 8, 174, 379
BshFI GGCC 3 cut(s) 197, 469, 1238
BshNI GGYRCC 1 cut(s) 215
BshTI ACCGGT 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 2 cut(s) 82, 460
BsiSI CCGG 2 cut(s) 278, 1112
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 3 cut(s) 341, 626, 1297
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 499
BsmI GAATGC 1 cut(s) 1093
BsnI GGCC 3 cut(s) 197, 469, 1238
BsoBI CYCGRG 2 cut(s) 82, 460
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 444, 718, 1031
BspACI CCGC 6 cut(s) 8, 108, 174, 379, 533, 1102
BspANI GGCC 3 cut(s) 197, 469, 1238
BspCNI CTCAG 6 cut(s) 149, 751, 780, 892, 921, 1150
BspFNI CGCG 3 cut(s) 8, 174, 379
BspLI GGNNCC 2 cut(s) 178, 217
BspMAI CTGCAG 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 1180
BspPI GGATC 2 cut(s) 713, 1026
BspT107I GGYRCC 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 228, 1377
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 563, 868
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 56, 153
BssMI GATC 3 cut(s) 444, 718, 1031
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 6 cut(s) 202, 244, 322, 805, 1256, 1365
BstAPI GCANNNNNTGC 1 cut(s) 1099
BstC8I GCNNGC 4 cut(s) 29, 300, 471, 1240
BstDEI CTNAG 6 cut(s) 136, 738, 767, 900, 908, 1137
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 6 cut(s) 316, 535, 684, 929, 1120, 1267
BstFNI CGCG 3 cut(s) 8, 174, 379
BstHHI GCGC 3 cut(s) 174, 304, 894
BstKTI GATC 3 cut(s) 447, 721, 1034
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 3 cut(s) 444, 718, 1031
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 1 cut(s) 305
BstUI CGCG 3 cut(s) 8, 174, 379
BstV1I GCAGC 8 cut(s) 39, 73, 99, 291, 427, 1077, 1132, 1340
BstV2I GAAGAC 1 cut(s) 1179
BstXI CCANNNNNNTGG 2 cut(s) 193, 730
BsuRI GGCC 3 cut(s) 197, 469, 1238
BtgI CCRYGG 1 cut(s) 56
BtgZI GCGATG 1 cut(s) 248
BtsCI GGATG 6 cut(s) 316, 535, 684, 929, 1120, 1267
BtsI GCAGTG 3 cut(s) 97, 723, 1354
BtsIMutI CAGTG 6 cut(s) 97, 144, 198, 363, 723, 1354
BveI ACCTGC 1 cut(s) 1180
Cac8I GCNNGC 4 cut(s) 29, 300, 471, 1240
CfoI GCGC 3 cut(s) 174, 304, 894
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 467
CseI GACGC 1 cut(s) 14
Csp6I GTAC 3 cut(s) 76, 190, 666
CspAI ACCGGT 1 cut(s) 277
CviAII CATG 4 cut(s) 404, 524, 818, 1243
CviQI GTAC 3 cut(s) 76, 190, 666
DdeI CTNAG 6 cut(s) 136, 738, 767, 900, 908, 1137
DpnI GATC 3 cut(s) 446, 720, 1033
DpnII GATC 3 cut(s) 444, 718, 1031
DraIII CACNNNGTG 2 cut(s) 139, 222
EaeI YGGCCR 2 cut(s) 195, 1236
Eco32I GATATC 1 cut(s) 1156
Eco88I CYCGRG 2 cut(s) 82, 460
EcoRII CCWGG 1 cut(s) 153
EcoRV GATATC 1 cut(s) 1156
FaeI CATG 4 cut(s) 407, 527, 821, 1246
FaqI GGGAC 1 cut(s) 499
FatI CATG 4 cut(s) 403, 523, 817, 1242
FblI GTMKAC 1 cut(s) 410
FokI GGATG 6 cut(s) 323, 542, 691, 916, 1127, 1274
FspBI CTAG 2 cut(s) 422, 1337
FspI TGCGCA 1 cut(s) 893
GlaI GCGC 3 cut(s) 173, 303, 893
HaeIII GGCC 3 cut(s) 197, 469, 1238
HapII CCGG 2 cut(s) 278, 1112
HgaI GACGC 1 cut(s) 14
HhaI GCGC 3 cut(s) 174, 304, 894
Hin1II CATG 4 cut(s) 407, 527, 821, 1246
Hin6I GCGC 3 cut(s) 172, 302, 892
HinP1I GCGC 3 cut(s) 172, 302, 892
HincII GTYRAC 2 cut(s) 411, 1183
HindII GTYRAC 2 cut(s) 411, 1183
HindIII AAGCTT 1 cut(s) 1231
HinfI GANTC 4 cut(s) 388, 734, 904, 1222
HpaI GTTAAC 1 cut(s) 1183
HpaII CCGG 2 cut(s) 278, 1112
HphI GGTGA 4 cut(s) 25, 115, 267, 1101
Hpy166II GTNNAC 2 cut(s) 411, 1183
Hpy188I TCNGA 8 cut(s) 181, 336, 710, 757, 901, 1036, 1310, 1378
Hpy188III TCNNGA 5 cut(s) 166, 453, 656, 731, 1079
Hpy8I GTNNAC 2 cut(s) 411, 1183
HpyAV CCTTC 3 cut(s) 10, 260, 984
HpyCH4III ACNGT 6 cut(s) 202, 244, 322, 805, 1256, 1365
HpyF3I CTNAG 6 cut(s) 136, 738, 767, 900, 908, 1137
Hsp92II CATG 4 cut(s) 407, 527, 821, 1246
HspAI GCGC 3 cut(s) 172, 302, 892
KspAI GTTAAC 1 cut(s) 1183
Kzo9I GATC 3 cut(s) 444, 718, 1031
LmnI GCTCC 4 cut(s) 142, 182, 602, 1069
Lsp1109I GCAGC 8 cut(s) 39, 73, 99, 291, 427, 1077, 1132, 1340
LweI GCATC 5 cut(s) 225, 301, 427, 520, 938
MaeI CTAG 2 cut(s) 422, 1337
MaeIII GTNAC 6 cut(s) 224, 273, 316, 358, 839, 1107
MalI GATC 3 cut(s) 446, 720, 1033
MboI GATC 3 cut(s) 444, 718, 1031
MboII GAAGA 6 cut(s) 607, 723, 755, 1019, 1184, 1231
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 2 cut(s) 197, 1238
MluCI AATT 6 cut(s) 43, 621, 714, 895, 945, 1274
MluNI TGGCCA 2 cut(s) 197, 1238
MnlI CCTC 7 cut(s) 63, 108, 520, 854, 981, 1252, 1316
Mox20I TGGCCA 2 cut(s) 197, 1238
MroXI GAANNNNTTC 1 cut(s) 20
MscI TGGCCA 2 cut(s) 197, 1238
MseI TTAA 5 cut(s) 477, 783, 882, 1182, 1203
MslI CAYNNNNRTG 2 cut(s) 233, 528
Msp20I TGGCCA 2 cut(s) 197, 1238
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 2 cut(s) 278, 1112
MspR9I CCNGG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 1093
MvaI CCWGG 1 cut(s) 155
MvnI CGCG 3 cut(s) 8, 174, 379
NdeII GATC 3 cut(s) 444, 718, 1031
NlaIII CATG 4 cut(s) 407, 527, 821, 1246
NlaIV GGNNCC 2 cut(s) 178, 217
NmuCI GTSAC 4 cut(s) 224, 273, 358, 1107
NsbI TGCGCA 1 cut(s) 893
PaeR7I CTCGAG 1 cut(s) 82
PctI GAATGC 1 cut(s) 1093
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 4 cut(s) 388, 734, 904, 1222
PflMI CCANNNNNTGG 2 cut(s) 626, 1297
PinAI ACCGGT 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 178, 217
PspPI GGNCC 1 cut(s) 467
PspXI VCTCGAGB 1 cut(s) 82
PstI CTGCAG 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 1010
RsaI GTAC 3 cut(s) 77, 191, 667
RsaNI GTAC 3 cut(s) 76, 190, 666
RseI CAYNNNNRTG 2 cut(s) 233, 528
SalI GTCGAC 1 cut(s) 409
SaqAI TTAA 5 cut(s) 477, 783, 882, 1182, 1203
Sau3AI GATC 3 cut(s) 444, 718, 1031
Sau96I GGNCC 1 cut(s) 467
ScaI AGTACT 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 5 cut(s) 225, 301, 427, 520, 938
SfcI CTRYAG 1 cut(s) 305
Sfr274I CTCGAG 1 cut(s) 82
SgrAI CRCCGGYG 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 82
SmiMI CAYNNNNRTG 2 cut(s) 233, 528
SmlI CTYRAG 2 cut(s) 82, 164
SmoI CTYRAG 2 cut(s) 82, 164
Sse9I AATT 6 cut(s) 43, 621, 714, 895, 945, 1274
SsiI CCGC 6 cut(s) 8, 108, 174, 379, 533, 1102
SspI AATATT 2 cut(s) 541, 787
SspMI CTAG 2 cut(s) 422, 1337
StyD4I CCNGG 1 cut(s) 153
TaaI ACNGT 6 cut(s) 202, 244, 322, 805, 1256, 1365
TaqI TCGA 3 cut(s) 83, 410, 1030
TasI AATT 6 cut(s) 43, 621, 714, 895, 945, 1274
TatI WGTACW 2 cut(s) 75, 189
TauI GCSGC 3 cut(s) 111, 177, 1105
TfiI GAWTC 4 cut(s) 388, 734, 904, 1222
Tru1I TTAA 5 cut(s) 477, 783, 882, 1182, 1203
Tru9I TTAA 5 cut(s) 477, 783, 882, 1182, 1203
TscAI CASTG 6 cut(s) 97, 144, 205, 363, 730, 1361
TseFI GTSAC 4 cut(s) 224, 273, 358, 1107
TseI GCWGC 8 cut(s) 52, 61, 87, 304, 440, 1090, 1120, 1328
Tsp45I GTSAC 4 cut(s) 224, 273, 358, 1107
TspDTI ATGAA 5 cut(s) 392, 568, 695, 966, 1185
TspRI CASTG 6 cut(s) 97, 144, 205, 363, 730, 1361
Van91I CCANNNNNTGG 2 cut(s) 626, 1297
XapI RAATTY 2 cut(s) 43, 1274
XcmI CCANNNNNNNNNTGG 1 cut(s) 860
XhoI CTCGAG 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 2 cut(s) 422, 1337
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.