Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Forward (+)

87300776 .. 87312656

Gene Structure 11881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG646500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

ATGGGAGAAACCAAAAGAAAACGAGGACGAGCTCCAAAACCCAAAACCCCAGAAACCGCCACCACCTCAATGGACATCGACGACGCCGCTCCGCCCCCCACGACGGAGCCTCTCTCCGACGCCGGCACCTCCCAGCCCTCCCGCCGCGGCCGCGGCCGCCCCAGGAAGGCCGAGTCCGCCAACATCACCGCCTCGCCGGAGCGGCGGAGCTCCCGGCACGCGTCGGAGCAGAACGGCGACGCCGGGGCGGTGAGTTCGGAGCCGCCGCTGATGGCGCCGAGCTGGGAGAGCGTGGCGCGCGTGGTGCCGGCGATGGACTCGGTGGTGAAGGTGTTTTGCGTCCACACGGAGCCGAATTTCTCGTTGCCGTGGCAGAGGAAGAGGCAGTACAGCTCGAGTAGCAGTGGGTTTGTGATTGGAGGAAGAAGGGTCTTGACCAATGCGCACTCTGTGGAGCACCATACACAGGTTAAGCTCAAGAAGCGTGGCTCTGAGACTAAGTACTTGGCTACTGTGTTGGCGATTGGGACCGAATGTGATATTGCCATGCTCACAGTGAGTGATGATGAGTTCTGGGAAGGCGTTTCACCTGTGGAGTTTGGAGAGTTGCCGGCGCTCCAAGATGCTGTGACGGTTGTGGGCTACCCTATTGGGGGTGACACGATCTCTGTGACGAGTGGTGTAGTGTCACGTATGGAGATACTTTCATATGTTCATGGATCAACTGAGCTTCTGGGACTGCAGATAGATGCTGCCATAAACTCTGGAAACTCTGGTGGGCCTGCCTTCAACGACAAGGGGACCTGTGTGGGCATTGCTTTTCAGTCTCTTAAACATGAAGATGCAGAAAATATAGGCTACGTTATTCCAACACCTGTTATTAAGCACTTCATTACAGATTACGAGAAGAATGGGGCCTATACAGGGTTCCCAATTATTGGAATTGAGTGGCAAAAGATGGAAAATCCTGATCTACGCACGTCAATGGGGATGAAAGCTGATCAAAAGGGTGTACGTATTAGAAGGATCGAACCTACAGCTCCAGATTCTCATCTTCTGCAACCATCTGATGTCATTCTTAGCTTTGATGGAGTTAATATTGCAAATGATGGCACAGTTCCATTCAGGCATGGAGAGCGCATAGGTTTCAGTTACCTTGTCTCCCAAAAATACATTGGGGATAATGCTCTAGTCAAAGTTCTAAGAAACTCAGAGACACTTGAATTCAACATAAAACTAGCAAAACACAAGGAACTGATCCCGTCACACATAGAGGGAAAACCTCCTTCTTATTACATCATTGCTGGATTTGTTTTCACAGCTGTATCTGTTCCATATCTGCGTTCTGAGTTTGGAAATATATTTGATGTTCCAATCAAATTATTGGACAAGCATTTACATGCAATGGCACAGTCTATTGATGAACAGCTTGTTGTTGTTTCTCAGGTACTTGTTGCTGACATTAATATTGGATATGAGGATATCGTTAACAATCAGGTTCTTGACTTCAATGGTAAGCCTGTGAAGAACCTGAAGAGCTTAGCCAAGATGGTCGAGAATTGTGATGACCAGTACCTAAAGTTTAGCCTAGAATATAATCAGATGGTTGTTCTACAGACAAAAACTGCCAAGGCAGCAACACTAGATATCCTCACAACGCATTGCATATCTTCGTCCATGTCTGATGACCTTAAGACTAAAGACATTATGTTACAGGAAGTAGAGTCTTTGTCTGATGACCTTAAGACTAAGATATTAGAGGAAGAACAAATGCTTACTTCTCCTTTAGCTGTATCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

600

Amino Acids

65.7

Weight (kDa)

5.75

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	120 - 298	1.2e-19	Trypsin
Trypsin_2	PF13365	135 - 272	4.9e-20	Trypsin-like peptidase domain
PDZ_2	PF13180	313 - 413	2e-06	PDZ domain
PDZ_3	PF17815	420 - 563	1.7e-44	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	444
AccB1I	GGYRCC	3 cut(s)	125, 274, 304
AccB7I	CCANNNNNTGG	1 cut(s)	938
AccBSI	CCGCTC	2 cut(s)	89, 202
AccII	CGCG	5 cut(s)	147, 153, 221, 298, 300
AclWI	GGATC	3 cut(s)	727, 1034, 1252
AcoI	YGGCCR	2 cut(s)	148, 154
AcsI	RAATTY	2 cut(s)	355, 1223
AcuI	CTGAAG	1 cut(s)	1553
AcyI	GRCGYC	4 cut(s)	84, 120, 240, 275
AdeI	CACNNNGTG	1 cut(s)	451
AfaI	GTAC	5 cut(s)	389, 503, 1014, 1449, 1574
AfiI	CCNNNNNNNGG	7 cut(s)	103, 166, 466, 652, 653, 924, 938
AflII	CTTAAG	2 cut(s)	1691, 1742
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	4 cut(s)	790, 1223, 1228, 1510
AjiI	CACGTC	1 cut(s)	981
AjnI	CCWGG	1 cut(s)	161
Alw21I	GWGCWC	3 cut(s)	34, 212, 459
Alw26I	GTCTC	4 cut(s)	488, 831, 1165, 1208
AlwI	GGATC	3 cut(s)	727, 1034, 1252
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	5 cut(s)	148, 154, 168, 779, 915
ApeKI	GCWGC	2 cut(s)	752, 1634
ApoI	RAATTY	2 cut(s)	355, 1223
AseI	ATTAAT	1 cut(s)	1464
AspLEI	GCGC	6 cut(s)	277, 298, 300, 445, 616, 1140
AspS9I	GGNCC	4 cut(s)	528, 779, 801, 915
AsuC2I	CCSGG	2 cut(s)	214, 244
AsuHPI	GGTGA	5 cut(s)	178, 262, 337, 579, 668
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	2 cut(s)	528, 801
BaeI	ACNNNNGTAYC	2 cut(s)	1308, 1341
BanI	GGYRCC	3 cut(s)	125, 274, 304
BanII	GRGCYC	2 cut(s)	34, 212
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
Bbv12I	GWGCWC	3 cut(s)	34, 212, 459
BbvI	GCAGC	2 cut(s)	739, 1646
BccI	CCATC	8 cut(s)	265, 307, 952, 1072, 1082, 1103, 1543, 1597
BceAI	ACGGC	2 cut(s)	250, 352
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	1 cut(s)	1000
BcnI	CCSGG	2 cut(s)	214, 244
BcoDI	GTCTC	4 cut(s)	488, 831, 1165, 1208
BfaI	CTAG	4 cut(s)	1190, 1238, 1589, 1643
BfmI	CTRYAG	3 cut(s)	740, 1035, 1613
BfoI	RGCGCY	2 cut(s)	278, 617
BfrI	CTTAAG	2 cut(s)	1691, 1742
BglI	GCCNNNNNGGC	1 cut(s)	202
BlpI	GCTNAGC	1 cut(s)	1540
BmcAI	AGTACT	1 cut(s)	503
Bme1390I	CCNGG	3 cut(s)	163, 214, 244
Bme18I	GGWCC	2 cut(s)	528, 801
BmeT110I	CYCGRG	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	981
BmgT120I	GGNCC	4 cut(s)	528, 779, 801, 915
BmrFI	CCNGG	3 cut(s)	163, 214, 244
BmsI	GCATC	3 cut(s)	613, 739, 832
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	1026
Bpu1102I	GCTNAGC	1 cut(s)	1540
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	2 cut(s)	214, 244
BsaAI	YACGTR	2 cut(s)	692, 1016
BsaBI	GATNNNNATC	1 cut(s)	1050
BsaHI	GRCGYC	4 cut(s)	84, 120, 240, 275
BsaJI	CCNNGG	6 cut(s)	145, 151, 161, 243, 368, 1629
BsaXI	ACNNNNNCTCC	2 cut(s)	1145, 1175
Bsc4I	CCNNNNNNNGG	7 cut(s)	103, 166, 466, 652, 653, 924, 938
Bse118I	RCCGGY	3 cut(s)	122, 307, 610
Bse1I	ACTGG	1 cut(s)	1570
Bse3DI	GCAATG	4 cut(s)	813, 1299, 1410, 1660
Bse8I	GATNNNNATC	1 cut(s)	1050
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	6 cut(s)	145, 151, 161, 243, 368, 1629
BseGI	GGATG	1 cut(s)	996
BseJI	GATNNNNATC	1 cut(s)	1050
BseLI	CCNNNNNNNGG	7 cut(s)	103, 166, 466, 652, 653, 924, 938
BseMI	GCAATG	4 cut(s)	813, 1299, 1410, 1660
BseMII	CTCAG	5 cut(s)	483, 717, 1224, 1338, 1457
BseNI	ACTGG	1 cut(s)	1570
BsePI	GCGCGC	1 cut(s)	296
BseX3I	CGGCCG	2 cut(s)	148, 154
BseXI	GCAGC	2 cut(s)	739, 1646
BseYI	CCCAGC	2 cut(s)	132, 282
Bsh1236I	CGCG	5 cut(s)	147, 153, 221, 298, 300
Bsh1285I	CGRYCG	2 cut(s)	151, 157
BshFI	GGCC	5 cut(s)	150, 156, 170, 781, 917
BshNI	GGYRCC	3 cut(s)	125, 274, 304
BsiEI	CGRYCG	2 cut(s)	151, 157
BsiHKAI	GWGCWC	3 cut(s)	34, 212, 459
BsiHKCI	CYCGRG	1 cut(s)	394
BsiSI	CCGG	6 cut(s)	123, 197, 214, 243, 308, 611
BslFI	GGGAC	3 cut(s)	541, 750, 814
BslI	CCNNNNNNNGG	7 cut(s)	103, 166, 466, 652, 653, 924, 938
BsmAI	GTCTC	4 cut(s)	488, 831, 1165, 1208
BsmFI	GGGAC	3 cut(s)	541, 750, 814
BsnI	GGCC	5 cut(s)	150, 156, 170, 781, 917
BsoBI	CYCGRG	1 cut(s)	394
Bsp1286I	GDGCHC	3 cut(s)	34, 212, 459
Bsp143I	GATC	6 cut(s)	663, 719, 970, 1000, 1026, 1257
Bsp1720I	GCTNAGC	1 cut(s)	1540
BspANI	GGCC	5 cut(s)	150, 156, 170, 781, 917
BspCNI	CTCAG	5 cut(s)	484, 718, 1223, 1339, 1456
BspFNI	CGCG	5 cut(s)	147, 153, 221, 298, 300
BspMAI	CTGCAG	1 cut(s)	744
BspPI	GGATC	3 cut(s)	727, 1034, 1252
BspQI	GCTCTTC	1 cut(s)	1529
BspT107I	GGYRCC	3 cut(s)	125, 274, 304
BspTI	CTTAAG	2 cut(s)	1691, 1742
BsrBI	CCGCTC	2 cut(s)	89, 202
BsrDI	GCAATG	4 cut(s)	813, 1299, 1410, 1660
BsrFI	RCCGGY	3 cut(s)	122, 307, 610
BsrI	ACTGG	1 cut(s)	1570
BssAI	RCCGGY	3 cut(s)	122, 307, 610
BssECI	CCNNGG	6 cut(s)	145, 151, 161, 243, 368, 1629
BssHII	GCGCGC	1 cut(s)	296
BssMI	GATC	6 cut(s)	663, 719, 970, 1000, 1026, 1257
BssNI	GRCGYC	4 cut(s)	84, 120, 240, 275
BssT1I	CCWWGG	1 cut(s)	1629
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	5 cut(s)	514, 556, 634, 1117, 1413
Bst6I	CTCTTC	2 cut(s)	374, 1529
BstACI	GRCGYC	4 cut(s)	84, 120, 240, 275
BstAFI	CTTAAG	2 cut(s)	1691, 1742
BstBAI	YACGTR	2 cut(s)	692, 1016
BstC8I	GCNNGC	6 cut(s)	124, 219, 298, 309, 612, 783
BstDSI	CCRYGG	3 cut(s)	145, 151, 368
BstF5I	GGATG	1 cut(s)	996
BstFNI	CGCG	5 cut(s)	147, 153, 221, 298, 300
BstH2I	RGCGCY	2 cut(s)	278, 617
BstHHI	GCGC	6 cut(s)	277, 298, 300, 445, 616, 1140
BstKTI	GATC	6 cut(s)	666, 722, 973, 1003, 1029, 1260
BstMAI	GTCTC	4 cut(s)	488, 831, 1165, 1208
BstMBI	GATC	6 cut(s)	663, 719, 970, 1000, 1026, 1257
BstMCI	CGRYCG	2 cut(s)	151, 157
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	1403
BstSCI	CCNGG	3 cut(s)	161, 212, 242
BstSFI	CTRYAG	3 cut(s)	740, 1035, 1613
BstSNI	TACGTA	1 cut(s)	1016
BstUI	CGCG	5 cut(s)	147, 153, 221, 298, 300
BstV1I	GCAGC	2 cut(s)	739, 1646
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstZI	CGGCCG	2 cut(s)	148, 154
BsuRI	GGCC	5 cut(s)	150, 156, 170, 781, 917
BtgI	CCRYGG	3 cut(s)	145, 151, 368
BtgZI	GCGATG	1 cut(s)	326
BtrI	CACGTC	1 cut(s)	981
BtsCI	GGATG	1 cut(s)	996
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	409, 561
Cac8I	GCNNGC	6 cut(s)	124, 219, 298, 309, 612, 783
CciNI	GCGGCCGC	2 cut(s)	148, 154
CfoI	GCGC	6 cut(s)	277, 298, 300, 445, 616, 1140
Cfr10I	RCCGGY	3 cut(s)	122, 307, 610
Cfr13I	GGNCC	4 cut(s)	528, 779, 801, 915
Cfr42I	CCGCGG	2 cut(s)	148, 154
CseI	GACGC	5 cut(s)	92, 128, 210, 248, 328
Csp6I	GTAC	5 cut(s)	388, 502, 1013, 1448, 1573
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	6 cut(s)	547, 716, 836, 1130, 1400, 1678
CviQI	GTAC	5 cut(s)	388, 502, 1013, 1448, 1573
DinI	GGCGCC	1 cut(s)	276
DpnI	GATC	6 cut(s)	665, 721, 972, 1002, 1028, 1259
DpnII	GATC	6 cut(s)	663, 719, 970, 1000, 1026, 1257
DraIII	CACNNNGTG	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	148, 154
EagI	CGGCCG	2 cut(s)	148, 154
Eam1104I	CTCTTC	2 cut(s)	374, 1529
EarI	CTCTTC	2 cut(s)	374, 1529
EciI	GGCGGA	3 cut(s)	81, 166, 220
Ecl136II	GAGCTC	2 cut(s)	32, 210
EclXI	CGGCCG	2 cut(s)	148, 154
Eco105I	TACGTA	1 cut(s)	1016
Eco130I	CCWWGG	1 cut(s)	1629
Eco24I	GRGCYC	2 cut(s)	34, 212
Eco32I	GATATC	2 cut(s)	1483, 1648
Eco47I	GGWCC	2 cut(s)	528, 801
Eco52I	CGGCCG	2 cut(s)	148, 154
Eco53kI	GAGCTC	2 cut(s)	32, 210
Eco57I	CTGAAG	1 cut(s)	1553
Eco88I	CYCGRG	1 cut(s)	394
EcoICRI	GAGCTC	2 cut(s)	32, 210
EcoO109I	RGGNCCY	2 cut(s)	801, 915
EcoRI	GAATTC	1 cut(s)	1223
EcoRII	CCWGG	1 cut(s)	161
EcoRV	GATATC	2 cut(s)	1483, 1648
EcoT14I	CCWWGG	1 cut(s)	1629
EcoT38I	GRGCYC	2 cut(s)	34, 212
EgeI	GGCGCC	1 cut(s)	276
EheI	GGCGCC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	1629
FaeI	CATG	6 cut(s)	550, 719, 839, 1133, 1403, 1681
FaqI	GGGAC	3 cut(s)	541, 750, 814
FatI	CATG	6 cut(s)	546, 715, 835, 1129, 1399, 1677
FauI	CCCGC	1 cut(s)	149
FauNDI	CATATG	1 cut(s)	709
FbaI	TGATCA	1 cut(s)	1000
FokI	GGATG	1 cut(s)	1003
FriOI	GRGCYC	2 cut(s)	34, 212
FspAI	RTGCGCAY	1 cut(s)	444
FspBI	CTAG	4 cut(s)	1190, 1238, 1589, 1643
FspI	TGCGCA	1 cut(s)	444
GlaI	GCGC	6 cut(s)	276, 297, 299, 444, 615, 1139
GsaI	CCCAGC	2 cut(s)	136, 286
GsuI	CTGGAG	1 cut(s)	1026
HaeII	RGCGCY	2 cut(s)	278, 617
HaeIII	GGCC	5 cut(s)	150, 156, 170, 781, 917
HapII	CCGG	6 cut(s)	123, 197, 214, 243, 308, 611
HgaI	GACGC	5 cut(s)	92, 128, 210, 248, 328
HhaI	GCGC	6 cut(s)	277, 298, 300, 445, 616, 1140
Hin1I	GRCGYC	4 cut(s)	84, 120, 240, 275
Hin1II	CATG	6 cut(s)	550, 719, 839, 1133, 1403, 1681
Hin6I	GCGC	6 cut(s)	275, 296, 298, 443, 614, 1138
HinP1I	GCGC	6 cut(s)	275, 296, 298, 443, 614, 1138
HincII	GTYRAC	1 cut(s)	1489
HindII	GTYRAC	1 cut(s)	1489
HinfI	GANTC	4 cut(s)	173, 317, 1046, 1724
HpaI	GTTAAC	1 cut(s)	1489
HpaII	CCGG	6 cut(s)	123, 197, 214, 243, 308, 611
HphI	GGTGA	5 cut(s)	178, 262, 337, 579, 668
Hpy166II	GTNNAC	3 cut(s)	343, 1013, 1489
Hpy188III	TCNNGA	7 cut(s)	433, 478, 765, 968, 1043, 1502, 1555
Hpy8I	GTNNAC	3 cut(s)	343, 1013, 1489
Hpy99I	CGWCG	6 cut(s)	83, 86, 106, 122, 226, 242
HpyAV	CCTTC	7 cut(s)	160, 322, 420, 572, 796, 1017, 1296
HpyCH4III	ACNGT	5 cut(s)	514, 556, 634, 1117, 1413
HpyCH4IV	ACGT	4 cut(s)	691, 861, 980, 1015
HpyCH4V	TGCA	6 cut(s)	742, 845, 1060, 1103, 1403, 1665
HpySE526I	ACGT	4 cut(s)	691, 861, 980, 1015
Hsp92I	GRCGYC	4 cut(s)	84, 120, 240, 275
Hsp92II	CATG	6 cut(s)	550, 719, 839, 1133, 1403, 1681
HspAI	GCGC	6 cut(s)	275, 296, 298, 443, 614, 1138
KasI	GGCGCC	1 cut(s)	274
KroI	GCCGGC	3 cut(s)	122, 307, 610
KroNI	GCCGGC	3 cut(s)	124, 309, 612
Ksp22I	TGATCA	1 cut(s)	1000
KspAI	GTTAAC	1 cut(s)	1489
KspI	CCGCGG	2 cut(s)	148, 154
Kzo9I	GATC	6 cut(s)	663, 719, 970, 1000, 1026, 1257
LguI	GCTCTTC	1 cut(s)	1529
Lsp1109I	GCAGC	2 cut(s)	739, 1646
LweI	GCATC	3 cut(s)	613, 739, 832
MaeI	CTAG	4 cut(s)	1190, 1238, 1589, 1643
MaeII	ACGT	4 cut(s)	691, 861, 980, 1015
MaeIII	GTNAC	7 cut(s)	628, 656, 670, 687, 1151, 1263, 1710
MalI	GATC	6 cut(s)	665, 721, 972, 1002, 1028, 1259
MbiI	CCGCTC	2 cut(s)	89, 202
MboI	GATC	6 cut(s)	663, 719, 970, 1000, 1026, 1257
MboII	GAAGA	9 cut(s)	391, 435, 851, 919, 1046, 1537, 1546, 1662, 1775
MhlI	GDGCHC	3 cut(s)	34, 212, 459
MluCI	AATT	6 cut(s)	355, 933, 942, 1223, 1379, 1558
MluI	ACGCGT	1 cut(s)	219
Mly113I	GGCGCC	1 cut(s)	275
MlyI	GAGTC	3 cut(s)	182, 311, 1733
MmeI	TCCRAC	3 cut(s)	141, 204, 893
MroNI	GCCGGC	3 cut(s)	122, 307, 610
MseI	TTAA	8 cut(s)	471, 831, 882, 1095, 1464, 1488, 1692, 1743
MslI	CAYNNNNRTG	4 cut(s)	68, 840, 983, 1398
MspA1I	CMGCKG	4 cut(s)	147, 153, 268, 1322
MspCI	CTTAAG	2 cut(s)	1691, 1742
MspI	CCGG	6 cut(s)	123, 197, 214, 243, 308, 611
MspR9I	CCNGG	3 cut(s)	163, 214, 244
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	5 cut(s)	147, 153, 221, 298, 300
NaeI	GCCGGC	3 cut(s)	124, 309, 612
NarI	GGCGCC	1 cut(s)	275
NciI	CCSGG	2 cut(s)	214, 244
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	6 cut(s)	663, 719, 970, 1000, 1026, 1257
NgoMIV	GCCGGC	3 cut(s)	122, 307, 610
NlaIII	CATG	6 cut(s)	550, 719, 839, 1133, 1403, 1681
NmeAIII	GCCGAG	2 cut(s)	196, 303
NmuCI	GTSAC	5 cut(s)	628, 656, 670, 687, 1263
NotI	GCGGCCGC	2 cut(s)	148, 154
NsbI	TGCGCA	1 cut(s)	444
NspI	RCATGY	1 cut(s)	1403
PaeR7I	CTCGAG	1 cut(s)	394
PauI	GCGCGC	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	1529
PdiI	GCCGGC	3 cut(s)	124, 309, 612
PfeI	GAWTC	1 cut(s)	1046
PflMI	CCANNNNNTGG	1 cut(s)	938
PleI	GAGTC	3 cut(s)	181, 311, 1732
PluTI	GGCGCC	1 cut(s)	278
PpsI	GAGTC	3 cut(s)	181, 311, 1732
Ppu21I	YACGTR	2 cut(s)	692, 1016
PpuMI	RGGWCCY	1 cut(s)	801
PshBI	ATTAAT	1 cut(s)	1464
Psp124BI	GAGCTC	2 cut(s)	34, 212
Psp5II	RGGWCCY	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	2 cut(s)	132, 282
PspGI	CCWGG	1 cut(s)	161
PspPI	GGNCC	4 cut(s)	528, 779, 801, 915
PspPPI	RGGWCCY	1 cut(s)	801
PspXI	VCTCGAGB	1 cut(s)	394
PstI	CTGCAG	1 cut(s)	744
PteI	GCGCGC	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	1322
RsaI	GTAC	5 cut(s)	389, 503, 1014, 1449, 1574
RsaNI	GTAC	5 cut(s)	388, 502, 1013, 1448, 1573
RseI	CAYNNNNRTG	4 cut(s)	68, 840, 983, 1398
SacI	GAGCTC	2 cut(s)	34, 212
SacII	CCGCGG	2 cut(s)	148, 154
SapI	GCTCTTC	1 cut(s)	1529
SaqAI	TTAA	8 cut(s)	471, 831, 882, 1095, 1464, 1488, 1692, 1743
Sau3AI	GATC	6 cut(s)	663, 719, 970, 1000, 1026, 1257
Sau96I	GGNCC	4 cut(s)	528, 779, 801, 915
ScaI	AGTACT	1 cut(s)	503
SchI	GAGTC	3 cut(s)	182, 311, 1733
ScrFI	CCNGG	3 cut(s)	163, 214, 244
SduI	GDGCHC	3 cut(s)	34, 212, 459
SfaNI	GCATC	3 cut(s)	613, 739, 832
SfcI	CTRYAG	3 cut(s)	740, 1035, 1613
SfoI	GGCGCC	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	394
Sfr303I	CCGCGG	2 cut(s)	148, 154
SgrBI	CCGCGG	2 cut(s)	148, 154
SinI	GGWCC	2 cut(s)	528, 801
SlaI	CTCGAG	1 cut(s)	394
SmiMI	CAYNNNNRTG	4 cut(s)	68, 840, 983, 1398
SmlI	CTYRAG	4 cut(s)	394, 476, 1691, 1742
SmoI	CTYRAG	4 cut(s)	394, 476, 1691, 1742
SnaBI	TACGTA	1 cut(s)	1016
Sse9I	AATT	6 cut(s)	355, 933, 942, 1223, 1379, 1558
SspDI	GGCGCC	1 cut(s)	274
SspI	AATATT	2 cut(s)	1099, 1468
SspMI	CTAG	4 cut(s)	1190, 1238, 1589, 1643
SstI	GAGCTC	2 cut(s)	34, 212
StyD4I	CCNGG	3 cut(s)	161, 212, 242
StyI	CCWWGG	1 cut(s)	1629
TaaI	ACNGT	5 cut(s)	514, 556, 634, 1117, 1413
TaiI	ACGT	4 cut(s)	694, 864, 983, 1018
TaqI	TCGA	4 cut(s)	78, 395, 1029, 1554
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	6 cut(s)	355, 933, 942, 1223, 1379, 1558
TatI	WGTACW	2 cut(s)	387, 501
TauI	GCSGC	9 cut(s)	89, 147, 150, 153, 156, 159, 205, 265, 268
TfiI	GAWTC	1 cut(s)	1046
Tru1I	TTAA	8 cut(s)	471, 831, 882, 1095, 1464, 1488, 1692, 1743
Tru9I	TTAA	8 cut(s)	471, 831, 882, 1095, 1464, 1488, 1692, 1743
TscAI	CASTG	2 cut(s)	409, 561
TseFI	GTSAC	5 cut(s)	628, 656, 670, 687, 1263
TseI	GCWGC	2 cut(s)	752, 1634
Tsp45I	GTSAC	5 cut(s)	628, 656, 670, 687, 1263
TspDTI	ATGAA	6 cut(s)	696, 704, 852, 880, 1007, 1437
TspGWI	ACGGA	2 cut(s)	119, 362
TspRI	CASTG	2 cut(s)	409, 561
Van91I	CCANNNNNTGG	1 cut(s)	938
Vha464I	CTTAAG	2 cut(s)	1691, 1742
VpaK11BI	GGWCC	2 cut(s)	528, 801
VspI	ATTAAT	1 cut(s)	1464
XapI	RAATTY	2 cut(s)	355, 1223
XceI	RCATGY	1 cut(s)	1403
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 1172
XhoI	CTCGAG	1 cut(s)	394
XspI	CTAG	4 cut(s)	1190, 1238, 1589, 1643
ZrmI	AGTACT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.