Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Forward (+)

55825888 .. 55829518

Gene Structure 3631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGCCCCCGCCGCGCCGCGGCCGCCCCAAGAAGCTCCCGAAGCTCTCCGAAAACGGCGACCACGACCCCGACCCGCCCGGCCCGGCCGATTCGGATCCCGGAACGGCCTGGGAGGGCGGGGCGAGGGTGGTGCCGTCGATGGACGCGGTGGTGAAGGTGTTCTGCACGCACACGGAGCCGAATTTCTCGCTGCCGTGGCAGAGAAAGAGGCAGTACAGCTCGAGCAGCAGTGGGTTTGTGATTGGCGGCAGGAGGGTGCTCACCAATGCTCACTCAGTGGAGCATTACACCCAGGTCAAGCTCAAGAAGCGCGGCTCCGATACCAAGTACTTGGCCACTGTTCTTGCTATTGGCACCGAGTGTGACATTGCAATGCTTACGGTTGATGATGATGAGTTTTGGGAAGGTGTGTCACCGGTGGAGTTTGGGGAGTTGCCTGCGCTGCAAGATGCTGTTACTGTCGTGGGTTATCCGATTGGGGGAGACACAATTTCAGTGACGAGTGGCGTTGTATCGCGGATTGAGATTCTATCGTATGTTCATGGGTCAACTGAACTGCTAGGTTTGCAGATAGATGCTGCGATCAACTCTGGAAACTCGGGTGGGCCTGCTTTTAATGATAAAGGAACTTGTGTGGGTATTGCATTTCAGTCCCTAAAACACGAGGATGCGGAGAATATTGGTTATGTCATACCCACACCAGTAATAATGCACTTCATCAAAGATTATGAGAAGAATGGAGCATATACAGGATTTCCAATTCTTGGGATTGAGTGGCAGAAAATGGAAAATCCTGATTTGCGTACATCAATGGGCATGAAACCTGATCAAAAGGGTGTTCGTATCAGAAGAATTGATCCCACTGCTCTGGAATCTCAGGTTTTGAAGCCATCTGATATTCTTCTCAGCTTTGATGGAGTTAATATTGCCAATGATGGAACAGTTCCTTTTCGGCATGGAGAACGCATAGGTTTTAGTTACCTCATATCCCAGAAATATACTGGGGATAACTCAAAGGTTAAAGTTCTGCGCAATTCTGAGATTCTCAGTTTTGATATAAAACTTGCATCCCACAAAAGATTAATTCCAGCACACATCAAGGGCAGACCTCCTTCATATTATATTGTTGCAGGATTTGTTTTCACAGCTGTATCTGTTCCCTATCTTCGATCCGAGTATGGAAAGGATTATGAGTTTGAAGCTCCTGTCAAACTTTTGGACAAAATGCTGCATTCCTTGCGGCAGTCACCGGATGAGCAGCTTGTAGTGGTTTCTCAGGTGCTTGTGGCTGATATCAACATTGGGTATGAAGACATAGTTAACACGCAGGTTCTTGCTTTTAATGGTAAGCCTGTGAAGAATCTAAAAAGCTTGGCCAGCATGGTAGAGAACTGTGAGGATGAGTTTTTGAAATTTGATTTAGAATACCAACAGATGGCGGTCCTCCGAACAAATACTGCAAAAGCAGCTACCCTAGATATTCTTGCTACACACTGCATACCGTCAGCAATGTCTGATGATTTGAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

510

Amino Acids

56.05

Weight (kDa)

5.8

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	59 - 239	3.7e-19	Trypsin
Trypsin_2	PF13365	77 - 214	1.4e-20	Trypsin-like peptidase domain
PDZ_3	PF17815	362 - 507	1.6e-48	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1031
Acc36I	ACCTGC	1 cut(s)	1318
AccB1I	GGYRCC	2 cut(s)	130, 353
AccB7I	CCANNNNNTGG	2 cut(s)	764, 1435
AccII	CGCG	5 cut(s)	13, 18, 146, 312, 517
AclWI	GGATC	4 cut(s)	89, 102, 851, 1164
AcoI	YGGCCR	4 cut(s)	19, 84, 333, 1374
AcsI	RAATTY	2 cut(s)	181, 1412
AdeI	CACNNNGTG	2 cut(s)	277, 360
AfaI	GTAC	3 cut(s)	215, 329, 805
AfiI	CCNNNNNNNGG	4 cut(s)	17, 479, 764, 1435
AgeI	ACCGGT	1 cut(s)	415
AgsI	TTSAA	4 cut(s)	886, 1199, 1411, 1525
AjnI	CCWGG	2 cut(s)	107, 291
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	477
AlwI	GGATC	4 cut(s)	89, 102, 851, 1164
Ama87I	CYCGRG	2 cut(s)	220, 598
AoxI	GGCC	7 cut(s)	19, 79, 84, 105, 333, 605, 1374
ApeKI	GCWGC	7 cut(s)	190, 225, 442, 578, 1228, 1258, 1466
ApoI	RAATTY	2 cut(s)	181, 1412
AseI	ATTAAT	1 cut(s)	1082
AsiGI	ACCGGT	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	4 cut(s)	15, 312, 442, 1032
AspS9I	GGNCC	3 cut(s)	80, 605, 1441
AsuC2I	CCSGG	3 cut(s)	78, 83, 99
AsuHPI	GGTGA	4 cut(s)	163, 253, 405, 1239
AvaI	CYCGRG	2 cut(s)	220, 598
AvaII	GGWCC	1 cut(s)	1441
BaeI	ACNNNNGTAYC	2 cut(s)	1134, 1167
BalI	TGGCCA	2 cut(s)	335, 1376
BamHI	GGATCC	1 cut(s)	94
BanI	GGYRCC	2 cut(s)	130, 353
BauI	CACGAG	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	1317
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	7 cut(s)	177, 237, 429, 565, 1215, 1270, 1478
BccI	CCATC	5 cut(s)	133, 898, 908, 929, 1429
BceAI	ACGGC	4 cut(s)	70, 118, 120, 178
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	2 cut(s)	109, 293
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	3 cut(s)	78, 83, 99
BcoDI	GTCTC	1 cut(s)	477
BfaI	CTAG	2 cut(s)	560, 1475
BfuAI	ACCTGC	1 cut(s)	1318
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	5 cut(s)	78, 83, 99, 109, 293
Bme18I	GGWCC	1 cut(s)	1441
BmeT110I	CYCGRG	2 cut(s)	220, 598
BmgT120I	GGNCC	3 cut(s)	80, 605, 1441
BmiI	GGNNCC	5 cut(s)	96, 132, 177, 316, 355
BmrFI	CCNGG	5 cut(s)	78, 83, 99, 109, 293
BmrI	ACTGGG	1 cut(s)	1011
BmsI	GCATC	4 cut(s)	439, 565, 658, 1076
BmuI	ACTGGG	1 cut(s)	1011
BpiI	GAAGAC	1 cut(s)	1317
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	3 cut(s)	78, 83, 99
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	16, 108, 194, 291
BsaWI	WCCGGW	2 cut(s)	415, 1249
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 479, 764, 1435
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	701, 1006
Bse3DI	GCAATG	3 cut(s)	366, 378, 1515
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	109, 293
BseDI	CCNNGG	4 cut(s)	16, 108, 194, 291
BseGI	GGATG	4 cut(s)	673, 1067, 1258, 1405
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	4 cut(s)	17, 479, 764, 1435
BseMI	GCAATG	3 cut(s)	366, 378, 1515
BseMII	CTCAG	6 cut(s)	288, 890, 919, 1029, 1060, 1289
BseNI	ACTGG	2 cut(s)	701, 1006
BseX3I	CGGCCG	2 cut(s)	19, 84
BseXI	GCAGC	7 cut(s)	177, 237, 429, 565, 1215, 1270, 1478
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	5 cut(s)	13, 18, 146, 312, 517
Bsh1285I	CGRYCG	2 cut(s)	22, 87
BshFI	GGCC	7 cut(s)	21, 81, 86, 107, 335, 607, 1376
BshNI	GGYRCC	2 cut(s)	130, 353
BshTI	ACCGGT	1 cut(s)	415
BsiEI	CGRYCG	2 cut(s)	22, 87
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	2 cut(s)	220, 598
BsiSI	CCGG	5 cut(s)	78, 83, 99, 416, 1250
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	4 cut(s)	17, 479, 764, 1435
BsmAI	GTCTC	1 cut(s)	477
BsmFI	GGGAC	1 cut(s)	637
BsmI	GAATGC	1 cut(s)	1231
BsnI	GGCC	7 cut(s)	21, 81, 86, 107, 335, 607, 1376
BsoBI	CYCGRG	2 cut(s)	220, 598
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	94, 582, 826, 856, 1169
BspANI	GGCC	7 cut(s)	21, 81, 86, 107, 335, 607, 1376
BspCNI	CTCAG	6 cut(s)	287, 889, 918, 1030, 1059, 1288
BspFNI	CGCG	5 cut(s)	13, 18, 146, 312, 517
BspLI	GGNNCC	5 cut(s)	96, 132, 177, 316, 355
BspMI	ACCTGC	1 cut(s)	1318
BspPI	GGATC	4 cut(s)	89, 102, 851, 1164
BspT107I	GGYRCC	2 cut(s)	130, 353
BsrDI	GCAATG	3 cut(s)	366, 378, 1515
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	701, 1006
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	4 cut(s)	16, 108, 194, 291
BssMI	GATC	5 cut(s)	94, 582, 826, 856, 1169
BssSI	CACGAG	1 cut(s)	662
Bst2BI	CACGAG	1 cut(s)	662
Bst2UI	CCWGG	2 cut(s)	109, 293
Bst4CI	ACNGT	6 cut(s)	340, 382, 460, 943, 1394, 1503
BstAPI	GCANNNNNTGC	1 cut(s)	1237
BstC8I	GCNNGC	4 cut(s)	167, 438, 609, 1378
BstDEI	CTNAG	6 cut(s)	274, 876, 905, 1038, 1046, 1275
BstDSI	CCRYGG	2 cut(s)	16, 194
BstF5I	GGATG	4 cut(s)	673, 1067, 1258, 1405
BstFNI	CGCG	5 cut(s)	13, 18, 146, 312, 517
BstHHI	GCGC	4 cut(s)	15, 312, 442, 1032
BstKTI	GATC	5 cut(s)	97, 585, 829, 859, 1172
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	5 cut(s)	94, 582, 826, 856, 1169
BstMCI	CGRYCG	2 cut(s)	22, 87
BstNI	CCWGG	2 cut(s)	109, 293
BstSCI	CCNGG	5 cut(s)	76, 81, 97, 107, 291
BstUI	CGCG	5 cut(s)	13, 18, 146, 312, 517
BstV1I	GCAGC	7 cut(s)	177, 237, 429, 565, 1215, 1270, 1478
BstV2I	GAAGAC	1 cut(s)	1317
BstX2I	RGATCY	1 cut(s)	94
BstXI	CCANNNNNNTGG	2 cut(s)	331, 868
BstYI	RGATCY	1 cut(s)	94
BstZI	CGGCCG	2 cut(s)	19, 84
BsuRI	GGCC	7 cut(s)	21, 81, 86, 107, 335, 607, 1376
BtgI	CCRYGG	2 cut(s)	16, 194
BtsCI	GGATG	4 cut(s)	673, 1067, 1258, 1405
BtsI	GCAGTG	3 cut(s)	235, 861, 1492
BtsIMutI	CAGTG	6 cut(s)	235, 282, 336, 501, 861, 1492
BveI	ACCTGC	1 cut(s)	1318
Cac8I	GCNNGC	4 cut(s)	167, 438, 609, 1378
CciNI	GCGGCCGC	1 cut(s)	19
CfoI	GCGC	4 cut(s)	15, 312, 442, 1032
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	80, 605, 1441
Cfr42I	CCGCGG	1 cut(s)	19
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	214, 328, 804
CspAI	ACCGGT	1 cut(s)	415
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	4 cut(s)	542, 817, 956, 1381
CviQI	GTAC	3 cut(s)	214, 328, 804
DdeI	CTNAG	6 cut(s)	274, 876, 905, 1038, 1046, 1275
DpnI	GATC	5 cut(s)	96, 584, 828, 858, 1171
DpnII	GATC	5 cut(s)	94, 582, 826, 856, 1169
DraIII	CACNNNGTG	2 cut(s)	277, 360
EaeI	YGGCCR	4 cut(s)	19, 84, 333, 1374
EagI	CGGCCG	2 cut(s)	19, 84
EclXI	CGGCCG	2 cut(s)	19, 84
Eco32I	GATATC	1 cut(s)	1294
Eco47I	GGWCC	1 cut(s)	1441
Eco52I	CGGCCG	2 cut(s)	19, 84
Eco88I	CYCGRG	2 cut(s)	220, 598
EcoRII	CCWGG	2 cut(s)	107, 291
EcoRV	GATATC	1 cut(s)	1294
FaeI	CATG	4 cut(s)	545, 820, 959, 1384
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	4 cut(s)	541, 816, 955, 1380
FauI	CCCGC	3 cut(s)	15, 81, 110
FbaI	TGATCA	1 cut(s)	826
FokI	GGATG	4 cut(s)	680, 1054, 1265, 1412
FspBI	CTAG	2 cut(s)	560, 1475
FspI	TGCGCA	1 cut(s)	1031
GlaI	GCGC	4 cut(s)	14, 311, 441, 1031
HaeIII	GGCC	7 cut(s)	21, 81, 86, 107, 335, 607, 1376
HapII	CCGG	5 cut(s)	78, 83, 99, 416, 1250
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	4 cut(s)	15, 312, 442, 1032
Hin1II	CATG	4 cut(s)	545, 820, 959, 1384
Hin6I	GCGC	4 cut(s)	13, 310, 440, 1030
HinP1I	GCGC	4 cut(s)	13, 310, 440, 1030
HincII	GTYRAC	2 cut(s)	549, 1321
HindII	GTYRAC	2 cut(s)	549, 1321
HindIII	AAGCTT	1 cut(s)	1369
HinfI	GANTC	5 cut(s)	89, 526, 872, 1042, 1360
HpaI	GTTAAC	1 cut(s)	1321
HpaII	CCGG	5 cut(s)	78, 83, 99, 416, 1250
HphI	GGTGA	4 cut(s)	163, 253, 405, 1239
Hpy166II	GTNNAC	2 cut(s)	549, 1321
Hpy188III	TCNNGA	5 cut(s)	37, 304, 591, 794, 869
Hpy8I	GTNNAC	2 cut(s)	549, 1321
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	148, 398, 1122
HpyCH4III	ACNGT	6 cut(s)	340, 382, 460, 943, 1394, 1503
HpyF3I	CTNAG	6 cut(s)	274, 876, 905, 1038, 1046, 1275
Hsp92II	CATG	4 cut(s)	545, 820, 959, 1384
HspAI	GCGC	4 cut(s)	13, 310, 440, 1030
Ksp22I	TGATCA	1 cut(s)	826
KspAI	GTTAAC	1 cut(s)	1321
KspI	CCGCGG	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	94, 582, 826, 856, 1169
LmnI	GCTCC	6 cut(s)	39, 175, 280, 320, 740, 1207
Lsp1109I	GCAGC	7 cut(s)	177, 237, 429, 565, 1215, 1270, 1478
LweI	GCATC	4 cut(s)	439, 565, 658, 1076
MaeI	CTAG	2 cut(s)	560, 1475
MaeIII	GTNAC	6 cut(s)	362, 411, 454, 496, 977, 1245
MalI	GATC	5 cut(s)	96, 584, 828, 858, 1171
MboI	GATC	5 cut(s)	94, 582, 826, 856, 1169
MboII	GAAGA	6 cut(s)	745, 861, 893, 1157, 1322, 1369
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	2 cut(s)	335, 1376
MluCI	AATT	7 cut(s)	181, 489, 759, 852, 1033, 1083, 1412
MluNI	TGGCCA	2 cut(s)	335, 1376
MnlI	CCTC	9 cut(s)	106, 117, 201, 246, 658, 992, 1119, 1390, 1454
Mox20I	TGGCCA	2 cut(s)	335, 1376
MroXI	GAANNNNTTC	1 cut(s)	158
MscI	TGGCCA	2 cut(s)	335, 1376
MseI	TTAA	6 cut(s)	615, 921, 1020, 1082, 1320, 1341
MslI	CAYNNNNRTG	2 cut(s)	371, 666
Msp20I	TGGCCA	2 cut(s)	335, 1376
MspA1I	CMGCKG	2 cut(s)	18, 1148
MspI	CCGG	5 cut(s)	78, 83, 99, 416, 1250
MspR9I	CCNGG	5 cut(s)	78, 83, 99, 109, 293
Mva1269I	GAATGC	1 cut(s)	1231
MvaI	CCWGG	2 cut(s)	109, 293
MvnI	CGCG	5 cut(s)	13, 18, 146, 312, 517
NciI	CCSGG	3 cut(s)	78, 83, 99
NdeII	GATC	5 cut(s)	94, 582, 826, 856, 1169
NlaIII	CATG	4 cut(s)	545, 820, 959, 1384
NlaIV	GGNNCC	5 cut(s)	96, 132, 177, 316, 355
NmuCI	GTSAC	4 cut(s)	362, 411, 496, 1245
NotI	GCGGCCGC	1 cut(s)	19
NsbI	TGCGCA	1 cut(s)	1031
PaeR7I	CTCGAG	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	1 cut(s)	1231
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	5 cut(s)	89, 526, 872, 1042, 1360
PflMI	CCANNNNNTGG	2 cut(s)	764, 1435
PfoI	TCCNGGA	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	1082
Psp6I	CCWGG	2 cut(s)	107, 291
PspGI	CCWGG	2 cut(s)	107, 291
PspN4I	GGNNCC	5 cut(s)	96, 132, 177, 316, 355
PspPI	GGNCC	3 cut(s)	80, 605, 1441
PspXI	VCTCGAGB	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	1148
RsaI	GTAC	3 cut(s)	215, 329, 805
RsaNI	GTAC	3 cut(s)	214, 328, 804
RseI	CAYNNNNRTG	2 cut(s)	371, 666
SacII	CCGCGG	1 cut(s)	19
SaqAI	TTAA	6 cut(s)	615, 921, 1020, 1082, 1320, 1341
Sau3AI	GATC	5 cut(s)	94, 582, 826, 856, 1169
Sau96I	GGNCC	3 cut(s)	80, 605, 1441
ScaI	AGTACT	1 cut(s)	329
ScrFI	CCNGG	5 cut(s)	78, 83, 99, 109, 293
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	4 cut(s)	439, 565, 658, 1076
Sfr274I	CTCGAG	1 cut(s)	220
Sfr303I	CCGCGG	1 cut(s)	19
SgrAI	CRCCGGYG	1 cut(s)	415
SgrBI	CCGCGG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	1441
SlaI	CTCGAG	1 cut(s)	220
SmiMI	CAYNNNNRTG	2 cut(s)	371, 666
SmlI	CTYRAG	2 cut(s)	220, 302
SmoI	CTYRAG	2 cut(s)	220, 302
Sse9I	AATT	7 cut(s)	181, 489, 759, 852, 1033, 1083, 1412
SspI	AATATT	2 cut(s)	679, 925
SspMI	CTAG	2 cut(s)	560, 1475
StyD4I	CCNGG	5 cut(s)	76, 81, 97, 107, 291
TaaI	ACNGT	6 cut(s)	340, 382, 460, 943, 1394, 1503
TaqI	TCGA	3 cut(s)	137, 221, 1168
TasI	AATT	7 cut(s)	181, 489, 759, 852, 1033, 1083, 1412
TatI	WGTACW	2 cut(s)	213, 327
TauI	GCSGC	7 cut(s)	13, 18, 21, 24, 249, 315, 1243
TfiI	GAWTC	5 cut(s)	89, 526, 872, 1042, 1360
Tru1I	TTAA	6 cut(s)	615, 921, 1020, 1082, 1320, 1341
Tru9I	TTAA	6 cut(s)	615, 921, 1020, 1082, 1320, 1341
TscAI	CASTG	6 cut(s)	235, 282, 343, 501, 868, 1499
TseFI	GTSAC	4 cut(s)	362, 411, 496, 1245
TseI	GCWGC	7 cut(s)	190, 225, 442, 578, 1228, 1258, 1466
Tsp45I	GTSAC	4 cut(s)	362, 411, 496, 1245
TspDTI	ATGAA	5 cut(s)	530, 706, 833, 1104, 1323
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	6 cut(s)	235, 282, 343, 501, 868, 1499
Van91I	CCANNNNNTGG	2 cut(s)	764, 1435
VpaK11BI	GGWCC	1 cut(s)	1441
VspI	ATTAAT	1 cut(s)	1082
XapI	RAATTY	2 cut(s)	181, 1412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	998
XhoI	CTCGAG	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	2 cut(s)	560, 1475
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.