Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Forward (+)

84534685 .. 84538333

Gene Structure 3649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53815

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGTGCCGAGCTGGGAGAGCGTGGCGCGCGTGGTGCCGGCGATGGACTCGGTGGTGAAGGTGTTTTGCGTTCACACGGAGCCGAATTTCTCGTTGCCGTGGCAGAGGAAGAGGCAGTACAGCTCGAGTAGTAGTGGGTTTGTGATTGGGGGAAGAAGGGTCTTGACCAATGCGCACTCTGTGGAGCACCATACACAGGTCAAGCTCAAGAAGCGTGGCTCCGAGACCAAGTACTTGGCTACTGTGTTGGCCATTGGGACTGAATGTGATATTGCCATGCTCACAGTGAGTGATGATGAGTTCTGGGAAGGAGTTTCACCTGTGGAGTTTGGAGAGTTGCCGGCGCTACAAGATGCTGTGACGGTTGTGGGCTACCCTATTGGGGGTGACACAATCTCTGTGACGAGTGGTGTAGTGTCACGTATGGAGATACTTTCATATGTTCATGGATCAACTGAGCTTCTGGGACTGCAGATAGATGCTGCCATAAACTCTGGAAACTCTGGTGGGCCTGCCTTCAACGACAAGGGGACCTGTGTGGGCATTGCTTTTCAGTCTCTTAAACATGAAGATGCAGAAAATATAGGCTACGTTATTCCAACACCTGTTATTAAGCACTTCATTACAGATTACGAGAAGAATGGGGCATATACAGGGTTCCCAATTATTGGAATTGAGTGGCAAAAGATGGAAAATCCTGATCTACGCACATCAATGGGGATGAAAGCTGATCAAAAGGGTGTACGAATTAGAAGGATCGAACCTACAGCTCCAGATTCTCATCTTCTGCAACCATCTGATGTCATTCTTAGCTTTGATGGAGTTAATATTGCAAATGATGGCACAGTTCCATTCAGGCATGGGGAGCGCATAGGTTTCAGTTACCTCGTCTCTCAGAAATATACTGGCGATAGTGCTGTAGTAAAAGTTCTTCGTAACTCACAGATACTTGAATTCAACATAAAACTTGGAACACACAAGCGTCTGATCCCAGCACACATCAACGGCAAGCCTCCTTCCTACTATATCATCGGTGGATTTGTTTTTTCAGCTGTATCCGTTCCATATCTGCGTTCTGAGTATGGAAAGGATTATGACTTTGATGCTCCAGTCAAACTTTTGGACAAACATTTACATGCAATGGCAGAATCTGCTGATGAACAGCTTGTTGTCGTTTCTCAGGTACTTGTTGCCGACATTAATATTGGATACGAGGACATTGTTAACACTCAGGTTCTTGCTTTCAATGGTAAGCCTGTGAAAAATTTAAAAAACTTGGCCACCATGGTGGAGAGTTGCGCTGATGAGTACCTAAAGTTTGATCTAGAATACAATCAGATGGTTGCCCTACAGACAAAAACAGCCAAAGCTGCAACTTTAGATATCCTTCTGACTCATTGCATACCTTCAGCCATGTCGGATGACCTTAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

478

Amino Acids

52.4

Weight (kDa)

5.71

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	30 - 208	7.7e-20	Trypsin
Trypsin_2	PF13365	45 - 182	3.2e-20	Trypsin-like peptidase domain
PDZ_2	PF13180	223 - 323	6.4e-06	PDZ domain
PDZ_3	PF17815	330 - 475	1.4e-47	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	174
AccB1I	GGYRCC	2 cut(s)	4, 34
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccII	CGCG	2 cut(s)	28, 30
AclWI	GGATC	3 cut(s)	457, 764, 982
AcoI	YGGCCR	2 cut(s)	249, 1278
AcsI	RAATTY	3 cut(s)	85, 953, 1264
AcuI	CTGAAG	1 cut(s)	1392
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	5 cut(s)	119, 233, 744, 1185, 1310
AfiI	CCNNNNNNNGG	4 cut(s)	196, 382, 383, 668
AflII	CTTAAG	1 cut(s)	1427
AgsI	TTSAA	4 cut(s)	520, 953, 958, 1246
AhdI	GACNNNNNGTC	1 cut(s)	1429
AleI	CACNNNNGTG	1 cut(s)	1286
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	3 cut(s)	218, 561, 895
AlwI	GGATC	3 cut(s)	457, 764, 982
AlwNI	CAGNNNCTG	1 cut(s)	1151
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	3 cut(s)	249, 509, 1278
ApeKI	GCWGC	2 cut(s)	482, 1370
ApoI	RAATTY	3 cut(s)	85, 953, 1264
AseI	ATTAAT	1 cut(s)	1200
AspLEI	GCGC	6 cut(s)	28, 30, 175, 346, 870, 1301
AspS9I	GGNCC	2 cut(s)	509, 531
AsuHPI	GGTGA	3 cut(s)	67, 309, 398
AvaI	CYCGRG	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	531
BalI	TGGCCA	2 cut(s)	251, 1280
BanI	GGYRCC	2 cut(s)	4, 34
BarI	GAAGNNNNNNTAC	4 cut(s)	101, 133, 915, 947
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	469, 1357
BccI	CCATC	6 cut(s)	37, 682, 802, 812, 833, 1333
BceAI	ACGGC	2 cut(s)	82, 1021
BciVI	GTATCC	2 cut(s)	1066, 1202
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	3 cut(s)	218, 561, 895
BfaI	CTAG	1 cut(s)	1325
BfmI	CTRYAG	4 cut(s)	470, 765, 918, 1349
BfoI	RGCGCY	1 cut(s)	347
BfrI	CTTAAG	1 cut(s)	1427
BfuI	GTATCC	2 cut(s)	1066, 1202
BisI	GCNGC	2 cut(s)	483, 1371
BlsI	GCNGC	2 cut(s)	484, 1372
BmcAI	AGTACT	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	531
BmeRI	GACNNNNNGTC	1 cut(s)	1429
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	509, 531
BmiI	GGNNCC	6 cut(s)	6, 36, 81, 220, 532, 659
BmsI	GCATC	4 cut(s)	343, 469, 562, 1093
BpmI	CTGGAG	2 cut(s)	756, 1092
BpuEI	CTTGAG	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	780
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	98, 1284
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 382, 383, 668
Bse118I	RCCGGY	2 cut(s)	37, 340
Bse1I	ACTGG	2 cut(s)	910, 1109
Bse3DI	GCAATG	3 cut(s)	543, 1146, 1396
Bse8I	GATNNNNATC	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	98, 1284
BseGI	GGATG	2 cut(s)	726, 1426
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	4 cut(s)	196, 382, 383, 668
BseMI	GCAATG	3 cut(s)	543, 1146, 1396
BseMII	CTCAG	5 cut(s)	447, 908, 1068, 1193, 1244
BseNI	ACTGG	2 cut(s)	910, 1109
BsePI	GCGCGC	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	469, 1357
BseYI	CCCAGC	2 cut(s)	12, 991
Bsh1236I	CGCG	2 cut(s)	28, 30
BshFI	GGCC	3 cut(s)	251, 511, 1280
BshNI	GGYRCC	2 cut(s)	4, 34
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	38, 341
BslFI	GGGAC	3 cut(s)	271, 480, 544
BslI	CCNNNNNNNGG	4 cut(s)	196, 382, 383, 668
BsmAI	GTCTC	3 cut(s)	218, 561, 895
BsmBI	CGTCTC	1 cut(s)	895
BsmFI	GGGAC	3 cut(s)	271, 480, 544
BsnI	GGCC	3 cut(s)	251, 511, 1280
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	6 cut(s)	449, 700, 730, 756, 987, 1321
Bsp19I	CCATGG	1 cut(s)	1284
BspANI	GGCC	3 cut(s)	251, 511, 1280
BspCNI	CTCAG	5 cut(s)	448, 907, 1069, 1192, 1243
BspFNI	CGCG	2 cut(s)	28, 30
BspLI	GGNNCC	6 cut(s)	6, 36, 81, 220, 532, 659
BspMAI	CTGCAG	1 cut(s)	474
BspPI	GGATC	3 cut(s)	457, 764, 982
BspT107I	GGYRCC	2 cut(s)	4, 34
BspTI	CTTAAG	1 cut(s)	1427
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	3 cut(s)	543, 1146, 1396
BsrFI	RCCGGY	2 cut(s)	37, 340
BsrI	ACTGG	2 cut(s)	910, 1109
BssAI	RCCGGY	2 cut(s)	37, 340
BssECI	CCNNGG	2 cut(s)	98, 1284
BssHII	GCGCGC	1 cut(s)	26
BssMI	GATC	6 cut(s)	449, 700, 730, 756, 987, 1321
BssT1I	CCWWGG	1 cut(s)	1284
Bst4CI	ACNGT	4 cut(s)	244, 286, 364, 847
Bst6I	CTCTTC	1 cut(s)	104
BstAFI	CTTAAG	1 cut(s)	1427
BstAPI	GCANNNNNTGC	1 cut(s)	1151
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	5 cut(s)	28, 39, 342, 513, 1010
BstDEI	CTNAG	6 cut(s)	456, 809, 894, 1077, 1179, 1230
BstDSI	CCRYGG	2 cut(s)	98, 1284
BstF5I	GGATG	2 cut(s)	726, 1426
BstFNI	CGCG	2 cut(s)	28, 30
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	6 cut(s)	28, 30, 175, 346, 870, 1301
BstKTI	GATC	6 cut(s)	452, 703, 733, 759, 990, 1324
BstMAI	GTCTC	3 cut(s)	218, 561, 895
BstMBI	GATC	6 cut(s)	449, 700, 730, 756, 987, 1321
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 27, 34, 211, 865, 1151, 1370
BstNSI	RCATGY	1 cut(s)	1139
BstSFI	CTRYAG	4 cut(s)	470, 765, 918, 1349
BstUI	CGCG	2 cut(s)	28, 30
BstV1I	GCAGC	2 cut(s)	469, 1357
BstXI	CCANNNNNNTGG	2 cut(s)	235, 1288
BsuI	GTATCC	2 cut(s)	1066, 1202
BsuRI	GGCC	3 cut(s)	251, 511, 1280
BtgI	CCRYGG	2 cut(s)	98, 1284
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	726, 1426
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	5 cut(s)	28, 39, 342, 513, 1010
CaiI	CAGNNNCTG	1 cut(s)	1151
CfoI	GCGC	6 cut(s)	28, 30, 175, 346, 870, 1301
Cfr10I	RCCGGY	2 cut(s)	37, 340
Cfr13I	GGNCC	2 cut(s)	509, 531
CseI	GACGC	1 cut(s)	971
Csp6I	GTAC	5 cut(s)	118, 232, 743, 1184, 1309
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	7 cut(s)	277, 446, 566, 860, 1136, 1285, 1414
CviQI	GTAC	5 cut(s)	118, 232, 743, 1184, 1309
DdeI	CTNAG	6 cut(s)	456, 809, 894, 1077, 1179, 1230
DpnI	GATC	6 cut(s)	451, 702, 732, 758, 989, 1323
DpnII	GATC	6 cut(s)	449, 700, 730, 756, 987, 1321
DraI	TTTAAA	1 cut(s)	1269
DraIII	CACNNNGTG	1 cut(s)	181
DriI	GACNNNNNGTC	1 cut(s)	1429
EaeI	YGGCCR	2 cut(s)	249, 1278
Eam1104I	CTCTTC	1 cut(s)	104
Eam1105I	GACNNNNNGTC	1 cut(s)	1429
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	1284
Eco31I	GGTCTC	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	1384
Eco47I	GGWCC	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	1392
Eco88I	CYCGRG	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	531
EcoRI	GAATTC	1 cut(s)	953
EcoRV	GATATC	1 cut(s)	1384
EcoT14I	CCWWGG	1 cut(s)	1284
ErhI	CCWWGG	1 cut(s)	1284
Esp3I	CGTCTC	1 cut(s)	895
FaeI	CATG	7 cut(s)	280, 449, 569, 863, 1139, 1288, 1417
FaqI	GGGAC	3 cut(s)	271, 480, 544
FatI	CATG	7 cut(s)	276, 445, 565, 859, 1135, 1284, 1413
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	2 cut(s)	483, 1371
FokI	GGATG	2 cut(s)	733, 1433
Fsp4HI	GCNGC	2 cut(s)	483, 1371
FspAI	RTGCGCAY	1 cut(s)	174
FspBI	CTAG	1 cut(s)	1325
FspI	TGCGCA	1 cut(s)	174
GlaI	GCGC	6 cut(s)	27, 29, 174, 345, 869, 1300
GluI	GCNGC	2 cut(s)	483, 1371
GsaI	CCCAGC	2 cut(s)	16, 995
GsuI	CTGGAG	2 cut(s)	756, 1092
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	251, 511, 1280
HapII	CCGG	2 cut(s)	38, 341
HgaI	GACGC	1 cut(s)	971
HhaI	GCGC	6 cut(s)	28, 30, 175, 346, 870, 1301
Hin1II	CATG	7 cut(s)	280, 449, 569, 863, 1139, 1288, 1417
Hin6I	GCGC	6 cut(s)	26, 28, 173, 344, 868, 1299
HinP1I	GCGC	6 cut(s)	26, 28, 173, 344, 868, 1299
HincII	GTYRAC	1 cut(s)	1225
HindII	GTYRAC	1 cut(s)	1225
HinfI	GANTC	4 cut(s)	47, 776, 1148, 1393
HpaI	GTTAAC	1 cut(s)	1225
HpaII	CCGG	2 cut(s)	38, 341
HphI	GGTGA	3 cut(s)	67, 309, 398
Hpy166II	GTNNAC	3 cut(s)	73, 743, 1225
Hpy188I	TCNGA	8 cut(s)	223, 799, 897, 987, 1078, 1338, 1392, 1420
Hpy188III	TCNNGA	6 cut(s)	163, 208, 495, 698, 773, 1325
Hpy8I	GTNNAC	3 cut(s)	73, 743, 1225
HpyAV	CCTTC	8 cut(s)	52, 150, 302, 526, 747, 1026, 1397, 1416
HpyCH4III	ACNGT	4 cut(s)	244, 286, 364, 847
HpyCH4IV	ACGT	2 cut(s)	421, 591
HpyCH4V	TGCA	7 cut(s)	472, 575, 790, 833, 1139, 1373, 1401
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 27, 34, 211, 865, 1151, 1370
HpyF3I	CTNAG	6 cut(s)	456, 809, 894, 1077, 1179, 1230
HpySE526I	ACGT	2 cut(s)	421, 591
Hsp92II	CATG	7 cut(s)	280, 449, 569, 863, 1139, 1288, 1417
HspAI	GCGC	6 cut(s)	26, 28, 173, 344, 868, 1299
KroI	GCCGGC	2 cut(s)	37, 340
KroNI	GCCGGC	2 cut(s)	39, 342
Ksp22I	TGATCA	1 cut(s)	730
KspAI	GTTAAC	1 cut(s)	1225
Kzo9I	GATC	6 cut(s)	449, 700, 730, 756, 987, 1321
LmnI	GCTCC	6 cut(s)	79, 184, 224, 775, 865, 1111
Lsp1109I	GCAGC	2 cut(s)	469, 1357
LweI	GCATC	4 cut(s)	343, 469, 562, 1093
MaeI	CTAG	1 cut(s)	1325
MaeII	ACGT	2 cut(s)	421, 591
MaeIII	GTNAC	6 cut(s)	358, 386, 400, 417, 881, 935
MalI	GATC	6 cut(s)	451, 702, 732, 758, 989, 1323
MboI	GATC	6 cut(s)	449, 700, 730, 756, 987, 1321
MboII	GAAGA	6 cut(s)	121, 165, 581, 649, 776, 923
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	2 cut(s)	251, 1280
MluCI	AATT	6 cut(s)	85, 663, 672, 747, 953, 1264
MluNI	TGGCCA	2 cut(s)	251, 1280
MlyI	GAGTC	2 cut(s)	41, 1387
MmeI	TCCRAC	2 cut(s)	623, 1398
MnlI	CCTC	5 cut(s)	99, 105, 896, 1023, 1207
Mox20I	TGGCCA	2 cut(s)	251, 1280
MroNI	GCCGGC	2 cut(s)	37, 340
MscI	TGGCCA	2 cut(s)	251, 1280
MseI	TTAA	8 cut(s)	561, 612, 825, 1200, 1224, 1268, 1428, 1435
MslI	CAYNNNNRTG	4 cut(s)	570, 713, 1134, 1286
Msp20I	TGGCCA	2 cut(s)	251, 1280
MspA1I	CMGCKG	1 cut(s)	1052
MspCI	CTTAAG	1 cut(s)	1427
MspI	CCGG	2 cut(s)	38, 341
MvnI	CGCG	2 cut(s)	28, 30
MwoI	GCNNNNNNNGC	7 cut(s)	18, 27, 34, 211, 865, 1151, 1370
NaeI	GCCGGC	2 cut(s)	39, 342
NcoI	CCATGG	1 cut(s)	1284
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	6 cut(s)	449, 700, 730, 756, 987, 1321
NgoMIV	GCCGGC	2 cut(s)	37, 340
NlaIII	CATG	7 cut(s)	280, 449, 569, 863, 1139, 1288, 1417
NlaIV	GGNNCC	6 cut(s)	6, 36, 81, 220, 532, 659
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	4 cut(s)	358, 386, 400, 417
NsbI	TGCGCA	1 cut(s)	174
NspI	RCATGY	1 cut(s)	1139
OliI	CACNNNNGTG	1 cut(s)	1286
PaeR7I	CTCGAG	1 cut(s)	124
PauI	GCGCGC	1 cut(s)	26
PdiI	GCCGGC	2 cut(s)	39, 342
PfeI	GAWTC	2 cut(s)	776, 1148
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	2 cut(s)	484, 1372
PleI	GAGTC	2 cut(s)	41, 1387
PpsI	GAGTC	2 cut(s)	41, 1387
Ppu21I	YACGTR	1 cut(s)	422
PpuMI	RGGWCCY	1 cut(s)	531
PshBI	ATTAAT	1 cut(s)	1200
Psp5II	RGGWCCY	1 cut(s)	531
PspFI	CCCAGC	2 cut(s)	12, 991
PspN4I	GGNNCC	6 cut(s)	6, 36, 81, 220, 532, 659
PspPI	GGNCC	2 cut(s)	509, 531
PspPPI	RGGWCCY	1 cut(s)	531
PspXI	VCTCGAGB	1 cut(s)	124
PsrI	GAACNNNNNNTAC	2 cut(s)	912, 944
PstI	CTGCAG	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	1151
PteI	GCGCGC	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	1052
RsaI	GTAC	5 cut(s)	119, 233, 744, 1185, 1310
RsaNI	GTAC	5 cut(s)	118, 232, 743, 1184, 1309
RseI	CAYNNNNRTG	4 cut(s)	570, 713, 1134, 1286
SaqAI	TTAA	8 cut(s)	561, 612, 825, 1200, 1224, 1268, 1428, 1435
SatI	GCNGC	2 cut(s)	483, 1371
Sau3AI	GATC	6 cut(s)	449, 700, 730, 756, 987, 1321
Sau96I	GGNCC	2 cut(s)	509, 531
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	2 cut(s)	41, 1387
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	4 cut(s)	343, 469, 562, 1093
SfcI	CTRYAG	4 cut(s)	470, 765, 918, 1349
Sfr274I	CTCGAG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	531
SlaI	CTCGAG	1 cut(s)	124
SmiMI	CAYNNNNRTG	4 cut(s)	570, 713, 1134, 1286
SmlI	CTYRAG	3 cut(s)	124, 206, 1427
SmoI	CTYRAG	3 cut(s)	124, 206, 1427
Sse9I	AATT	6 cut(s)	85, 663, 672, 747, 953, 1264
SspI	AATATT	2 cut(s)	829, 1204
SspMI	CTAG	1 cut(s)	1325
StyI	CCWWGG	1 cut(s)	1284
TaaI	ACNGT	4 cut(s)	244, 286, 364, 847
TaiI	ACGT	2 cut(s)	424, 594
TaqI	TCGA	2 cut(s)	125, 759
TasI	AATT	6 cut(s)	85, 663, 672, 747, 953, 1264
TatI	WGTACW	2 cut(s)	117, 231
TfiI	GAWTC	2 cut(s)	776, 1148
Tru1I	TTAA	8 cut(s)	561, 612, 825, 1200, 1224, 1268, 1428, 1435
Tru9I	TTAA	8 cut(s)	561, 612, 825, 1200, 1224, 1268, 1428, 1435
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	4 cut(s)	358, 386, 400, 417
TseI	GCWGC	2 cut(s)	482, 1370
Tsp45I	GTSAC	4 cut(s)	358, 386, 400, 417
TspDTI	ATGAA	6 cut(s)	426, 434, 582, 610, 737, 1173
TspGWI	ACGGA	2 cut(s)	92, 1048
TspRI	CASTG	1 cut(s)	291
Van91I	CCANNNNNTGG	1 cut(s)	668
Vha464I	CTTAAG	1 cut(s)	1427
VpaK11BI	GGWCC	1 cut(s)	531
VspI	ATTAAT	1 cut(s)	1200
XapI	RAATTY	3 cut(s)	85, 953, 1264
XbaI	TCTAGA	1 cut(s)	1324
XceI	RCATGY	1 cut(s)	1139
XhoI	CTCGAG	1 cut(s)	124
XspI	CTAG	1 cut(s)	1325
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.