Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Reverse (-)

11352882 .. 11356752

Gene Structure 3871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG140600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTGGATTTGTAGGATGAAAGTTTTTGTCTTACGTGCAAGTGTTTTGTATGTGGTGTTTGCAGCGATGCTTACGGTTGATGATGATGAGTTTTGGGAAGGTGTGTCACCGGTGGAGTTTGGGGAGTTGCCTGCGCTGCAAGATGCTGTTACTGTTGTGGGTTATCCGATTGGGGGAGACACGATTTCAGTGACGAGTGGCGTTGTATCGCGGATTGAGATTCTGTCGTATGTTCATGGGTCGACTGAACTGCTAGGTTTGCAGATAGATGCTGCGATCAACTCTGGAAACTCGGGTGGGCCTGCTTTTAATGATAAAGGAACTTGTGTGGGTATTGCATTTCAGTCCCTAAAACATGAGGATGCGGAGAATATTGGTTATGTCATACCCACACCAGTAATAATGCACTTCATCAAAGATTATGAGAAGAATGGAGCATATACAGGATTTCCAATTCTTGGGATTGAGTGGCAGAAAATGGAAAATCCTGATTTGCGTACATCAATGGGCATGAAACCTGATCAAAAGGGTGTTCGTATCAGAAGAATTGATCCCACTGCTCTGGAATCTCAGGTTTTGAAGCCATCTGATATTCTTCTCAGCTTTGATGGAGTTAATATTGCCAATGATGGAACAGTTCCTTTTCGGCATGGAGAACGCATAGGTTTTAGTTACCTCATATCCCAGAAATATACTGGGGATAACTCAAAGGTTAAAGTTCTGCGCAATTCTGAGATTCTCAGTTTTGATATAAAACTTGCATCCCACAAAAGACTAATTCCAGCACACATCAAGGGCAGACCTCCTTCATATTATATTGTTGCAGGATTTGTTTTCACAGCTGTATCTGTTCCCTATCTTCGATCCGAGTATGGAAAGGATTATGAGTTTGAAGCTCCTGTCAAACTTTTGGACAAAATGCTGCATTCCTTGCGGCAGTCACCGGATGAGCAGCTTGTAGTGGTTTCTCAGGTGCTTGTGGCTGATATCAACATTGGGTATGAAGACATAGTTAACACGCAGGTTCTTGCTTTTAATGGTAAGCCTGTGAAGAATCTAAAAAGCTTGGCCAGCATGGTAGAGAACTGTGACGATGAGTTTTTGAAATTTGATTTAGAATACCAACAGATGGCAGTCCTCCGAACAAATACTGCAAAAGCAGCTACCCTAGATATTCTTGCTACACACTGCATACCGTCAGCAATGTCTGATGATTTGAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

408

Amino Acids

45.1

Weight (kDa)

5.29

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	22 - 137	2.8e-09	Trypsin
Trypsin_2	PF13365	34 - 112	1.2e-11	Trypsin-like peptidase domain
PDZ_3	PF17815	260 - 405	1.3e-48	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	725
Acc36I	ACCTGC	1 cut(s)	1012
AccB7I	CCANNNNNTGG	2 cut(s)	458, 1129
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	1 cut(s)	211
AciI	CCGC	3 cut(s)	211, 365, 934
AclWI	GGATC	2 cut(s)	545, 858
AcoI	YGGCCR	1 cut(s)	1068
AcsI	RAATTY	1 cut(s)	1106
AfaI	GTAC	1 cut(s)	499
AfiI	CCNNNNNNNGG	3 cut(s)	173, 458, 1129
AgeI	ACCGGT	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	580, 893, 1105, 1219
AluBI	AGCT	6 cut(s)	603, 842, 896, 955, 1065, 1163
AluI	AGCT	6 cut(s)	603, 842, 896, 955, 1065, 1163
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	545, 858
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	2 cut(s)	299, 1068
ApeKI	GCWGC	6 cut(s)	62, 136, 272, 922, 952, 1160
ApoI	RAATTY	1 cut(s)	1106
AsiGI	ACCGGT	1 cut(s)	109
AspLEI	GCGC	2 cut(s)	136, 726
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	99, 933
AvaI	CYCGRG	1 cut(s)	292
BaeI	ACNNNNGTAYC	2 cut(s)	828, 861
BalI	TGGCCA	1 cut(s)	1070
BbsI	GAAGAC	1 cut(s)	1011
BbvI	GCAGC	6 cut(s)	74, 123, 259, 909, 964, 1172
BccI	CCATC	4 cut(s)	592, 602, 623, 1123
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	2 cut(s)	254, 1169
BfuAI	ACCTGC	1 cut(s)	1012
BisI	GCNGC	7 cut(s)	63, 137, 273, 923, 935, 953, 1161
BlsI	GCNGC	7 cut(s)	64, 138, 274, 924, 936, 954, 1162
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	5 cut(s)	57, 133, 259, 352, 770
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	1011
BsaAI	YACGTR	1 cut(s)	35
BsaWI	WCCGGW	2 cut(s)	109, 943
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 458, 1129
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	395, 700
Bse3DI	GCAATG	1 cut(s)	1209
BseGI	GGATG	4 cut(s)	21, 367, 761, 952
BseLI	CCNNNNNNNGG	3 cut(s)	173, 458, 1129
BseMI	GCAATG	1 cut(s)	1209
BseMII	CTCAG	5 cut(s)	584, 613, 723, 754, 983
BseNI	ACTGG	2 cut(s)	395, 700
BseXI	GCAGC	6 cut(s)	74, 123, 259, 909, 964, 1172
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	301, 1070
BshTI	ACCGGT	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	110, 944
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	173, 458, 1129
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	2 cut(s)	301, 1070
BsoBI	CYCGRG	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	276, 520, 550, 863
BspACI	CCGC	3 cut(s)	211, 365, 934
BspANI	GGCC	2 cut(s)	301, 1070
BspCNI	CTCAG	5 cut(s)	583, 612, 724, 753, 982
BspFNI	CGCG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	1012
BspPI	GGATC	2 cut(s)	545, 858
BsrDI	GCAATG	1 cut(s)	1209
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	395, 700
BssAI	RCCGGY	1 cut(s)	109
BssMI	GATC	4 cut(s)	276, 520, 550, 863
Bst4CI	ACNGT	5 cut(s)	76, 154, 637, 1088, 1197
BstAPI	GCANNNNNTGC	1 cut(s)	931
BstBAI	YACGTR	1 cut(s)	35
BstC8I	GCNNGC	3 cut(s)	132, 303, 1072
BstDEI	CTNAG	5 cut(s)	570, 599, 732, 740, 969
BstF5I	GGATG	4 cut(s)	21, 367, 761, 952
BstFNI	CGCG	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	136, 726
BstKTI	GATC	4 cut(s)	279, 523, 553, 866
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	4 cut(s)	276, 520, 550, 863
BstMWI	GCNNNNNNNGC	5 cut(s)	136, 259, 931, 1071, 1160
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	6 cut(s)	74, 123, 259, 909, 964, 1172
BstV2I	GAAGAC	1 cut(s)	1011
BstXI	CCANNNNNNTGG	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	301, 1070
BtgZI	GCGATG	1 cut(s)	80
BtsCI	GGATG	4 cut(s)	21, 367, 761, 952
BtsI	GCAGTG	2 cut(s)	555, 1186
BtsIMutI	CAGTG	3 cut(s)	195, 555, 1186
BveI	ACCTGC	1 cut(s)	1012
Cac8I	GCNNGC	3 cut(s)	132, 303, 1072
CfoI	GCGC	2 cut(s)	136, 726
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	498
CspAI	ACCGGT	1 cut(s)	109
CviAII	CATG	5 cut(s)	236, 356, 511, 650, 1075
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	5 cut(s)	570, 599, 732, 740, 969
DpnI	GATC	4 cut(s)	278, 522, 552, 865
DpnII	GATC	4 cut(s)	276, 520, 550, 863
EaeI	YGGCCR	1 cut(s)	1068
Eco32I	GATATC	1 cut(s)	988
Eco88I	CYCGRG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	988
FaeI	CATG	5 cut(s)	239, 359, 514, 653, 1078
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	5 cut(s)	235, 355, 510, 649, 1074
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	7 cut(s)	63, 137, 273, 923, 935, 953, 1161
FokI	GGATG	4 cut(s)	28, 374, 748, 959
Fsp4HI	GCNGC	7 cut(s)	63, 137, 273, 923, 935, 953, 1161
FspBI	CTAG	2 cut(s)	254, 1169
FspI	TGCGCA	1 cut(s)	725
GlaI	GCGC	2 cut(s)	135, 725
GluI	GCNGC	7 cut(s)	63, 137, 273, 923, 935, 953, 1161
HaeIII	GGCC	2 cut(s)	301, 1070
HapII	CCGG	2 cut(s)	110, 944
HhaI	GCGC	2 cut(s)	136, 726
Hin1II	CATG	5 cut(s)	239, 359, 514, 653, 1078
Hin6I	GCGC	2 cut(s)	134, 724
HinP1I	GCGC	2 cut(s)	134, 724
HincII	GTYRAC	2 cut(s)	243, 1015
HindII	GTYRAC	2 cut(s)	243, 1015
HindIII	AAGCTT	1 cut(s)	1063
HinfI	GANTC	4 cut(s)	220, 566, 736, 1054
HpaI	GTTAAC	1 cut(s)	1015
HpaII	CCGG	2 cut(s)	110, 944
HphI	GGTGA	2 cut(s)	99, 933
Hpy166II	GTNNAC	2 cut(s)	243, 1015
Hpy188I	TCNGA	7 cut(s)	168, 542, 589, 733, 868, 1142, 1210
Hpy188III	TCNNGA	3 cut(s)	285, 488, 563
Hpy8I	GTNNAC	2 cut(s)	243, 1015
HpyAV	CCTTC	2 cut(s)	92, 816
HpyCH4III	ACNGT	5 cut(s)	76, 154, 637, 1088, 1197
HpyCH4IV	ACGT	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	5 cut(s)	136, 259, 931, 1071, 1160
HpyF3I	CTNAG	5 cut(s)	570, 599, 732, 740, 969
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	5 cut(s)	239, 359, 514, 653, 1078
HspAI	GCGC	2 cut(s)	134, 724
Ksp22I	TGATCA	1 cut(s)	520
KspAI	GTTAAC	1 cut(s)	1015
Kzo9I	GATC	4 cut(s)	276, 520, 550, 863
LmnI	GCTCC	2 cut(s)	434, 901
Lsp1109I	GCAGC	6 cut(s)	74, 123, 259, 909, 964, 1172
LweI	GCATC	5 cut(s)	57, 133, 259, 352, 770
MaeI	CTAG	2 cut(s)	254, 1169
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	6 cut(s)	105, 148, 190, 671, 939, 1088
MalI	GATC	4 cut(s)	278, 522, 552, 865
MboI	GATC	4 cut(s)	276, 520, 550, 863
MboII	GAAGA	6 cut(s)	439, 555, 587, 851, 1016, 1063
MlsI	TGGCCA	1 cut(s)	1070
MluCI	AATT	5 cut(s)	453, 546, 727, 777, 1106
MluNI	TGGCCA	1 cut(s)	1070
MnlI	CCTC	4 cut(s)	352, 686, 813, 1148
Mox20I	TGGCCA	1 cut(s)	1070
MscI	TGGCCA	1 cut(s)	1070
MseI	TTAA	5 cut(s)	309, 615, 714, 1014, 1035
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	1070
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	2 cut(s)	110, 944
Mva1269I	GAATGC	1 cut(s)	925
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	5 cut(s)	136, 259, 931, 1071, 1160
NdeII	GATC	4 cut(s)	276, 520, 550, 863
NlaIII	CATG	5 cut(s)	239, 359, 514, 653, 1078
NmuCI	GTSAC	4 cut(s)	105, 190, 939, 1088
NsbI	TGCGCA	1 cut(s)	725
PctI	GAATGC	1 cut(s)	925
PfeI	GAWTC	4 cut(s)	220, 566, 736, 1054
PflMI	CCANNNNNTGG	2 cut(s)	458, 1129
PinAI	ACCGGT	1 cut(s)	109
PkrI	GCNGC	7 cut(s)	64, 138, 274, 924, 936, 954, 1162
Ppu21I	YACGTR	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
RseI	CAYNNNNRTG	1 cut(s)	360
SalI	GTCGAC	1 cut(s)	241
SaqAI	TTAA	5 cut(s)	309, 615, 714, 1014, 1035
SatI	GCNGC	7 cut(s)	63, 137, 273, 923, 935, 953, 1161
Sau3AI	GATC	4 cut(s)	276, 520, 550, 863
Sau96I	GGNCC	1 cut(s)	299
SfaNI	GCATC	5 cut(s)	57, 133, 259, 352, 770
SgrAI	CRCCGGYG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	5 cut(s)	453, 546, 727, 777, 1106
SsiI	CCGC	3 cut(s)	211, 365, 934
SspI	AATATT	2 cut(s)	373, 619
SspMI	CTAG	2 cut(s)	254, 1169
TaaI	ACNGT	5 cut(s)	76, 154, 637, 1088, 1197
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	242, 862
TasI	AATT	5 cut(s)	453, 546, 727, 777, 1106
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	4 cut(s)	220, 566, 736, 1054
Tru1I	TTAA	5 cut(s)	309, 615, 714, 1014, 1035
Tru9I	TTAA	5 cut(s)	309, 615, 714, 1014, 1035
TscAI	CASTG	3 cut(s)	195, 562, 1193
TseFI	GTSAC	4 cut(s)	105, 190, 939, 1088
TseI	GCWGC	6 cut(s)	62, 136, 272, 922, 952, 1160
Tsp45I	GTSAC	4 cut(s)	105, 190, 939, 1088
TspDTI	ATGAA	6 cut(s)	32, 224, 400, 527, 798, 1017
TspRI	CASTG	3 cut(s)	195, 562, 1193
Van91I	CCANNNNNTGG	2 cut(s)	458, 1129
XapI	RAATTY	1 cut(s)	1106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	2 cut(s)	254, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.