Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Reverse (-)

2270757 .. 2271203

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1037100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATGCTTTTAGCAATGCTTACGGTGAGCGATGATGAGTTCTGGGAAGGAACTTCACCTCTGGAGTTTGGAGAGTTACCCGCACTACAAGATGCTGTGACGGTTGCGGGCTACCCTATTGGGGGTGACACAATCTCTGTGACAAGTAGTGTTGTGTCACGTACGGAGATACTGTCTTATGTTCATGGATCGACTGAGCTTCTAGCTAGGACTGCAGGTTATTTCTGTTGGGCATTGTCTTCTACGACCATATCTAGCTACCTACTTACGTACAAATACATGATTATTTACCTGTTGTGGCTTCCTCGTTTCCTTTCTTTTGTAATCCTTTTGCAGATAGGTGCTTTAATAAACTCTGGAAGCTCCAGTGGCCCTGCCTTCGACGATAAGGGAAAATGTGTGGTATCGCATTTCAGTCTCTTAAACATGAAGATGCTGAGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

149

Amino Acids

16.24

Weight (kDa)

4.94

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AciI	CCGC	2 cut(s)	81, 107
AclWI	GGATC	1 cut(s)	196
AfaI	GTAC	2 cut(s)	163, 272
AfiI	CCNNNNNNNGG	2 cut(s)	121, 122
AluBI	AGCT	4 cut(s)	199, 206, 258, 363
AluI	AGCT	4 cut(s)	199, 206, 258, 363
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	37, 48, 137
BbsI	GAAGAC	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	3 cut(s)	203, 207, 255
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	371
BmsI	GCATC	2 cut(s)	82, 423
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	2 cut(s)	83, 349
BsaAI	YACGTR	2 cut(s)	161, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 122
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	121, 122
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	186, 428
BseNI	ACTGG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	372
BsiWI	CGTACG	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	121, 122
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	188
BspACI	CCGC	2 cut(s)	81, 107
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	2 cut(s)	187, 429
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	25, 103, 174
BstBAI	YACGTR	2 cut(s)	161, 270
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	195, 437
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 369
BstSFI	CTRYAG	1 cut(s)	213
BstSNI	TACGTA	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	162, 271
CviAII	CATG	3 cut(s)	185, 280, 427
CviJI	RGCY	7 cut(s)	111, 199, 206, 258, 301, 363, 372
CviKI_1	RGCY	7 cut(s)	111, 199, 206, 258, 301, 363, 372
CviQI	GTAC	2 cut(s)	162, 271
DdeI	CTNAG	2 cut(s)	195, 437
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
Eco105I	TACGTA	1 cut(s)	270
FaeI	CATG	3 cut(s)	188, 283, 430
FaiI	YATR	6 cut(s)	180, 186, 251, 281, 428, 445
FatI	CATG	3 cut(s)	184, 279, 426
FauI	CCCGC	2 cut(s)	88, 100
FspBI	CTAG	3 cut(s)	203, 207, 255
GsuI	CTGGAG	2 cut(s)	83, 349
HaeIII	GGCC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	188, 283, 430
HphI	GGTGA	3 cut(s)	37, 48, 137
Hpy188III	TCNNGA	2 cut(s)	62, 357
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	41, 388
HpyCH4III	ACNGT	3 cut(s)	25, 103, 174
HpyCH4IV	ACGT	2 cut(s)	160, 269
HpyCH4V	TGCA	2 cut(s)	215, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 369
HpyF3I	CTNAG	2 cut(s)	195, 437
HpySE526I	ACGT	2 cut(s)	160, 269
Hsp92II	CATG	3 cut(s)	188, 283, 430
Kzo9I	GATC	1 cut(s)	188
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	7 cut(s)	28, 47, 201, 305, 342, 379, 387
LweI	GCATC	2 cut(s)	82, 423
MaeI	CTAG	3 cut(s)	203, 207, 255
MaeII	ACGT	2 cut(s)	160, 269
MaeIII	GTNAC	5 cut(s)	75, 97, 125, 139, 156
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	2 cut(s)	231, 442
MnlI	CCTC	2 cut(s)	69, 315
MseI	TTAA	2 cut(s)	347, 422
MslI	CAYNNNNRTG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	212, 369
NdeII	GATC	1 cut(s)	188
NlaIII	CATG	3 cut(s)	188, 283, 430
NmuCI	GTSAC	4 cut(s)	97, 125, 139, 156
Pfl23II	CGTACG	1 cut(s)	161
Ppu21I	YACGTR	2 cut(s)	161, 270
PspLI	CGTACG	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	217
RsaI	GTAC	2 cut(s)	163, 272
RsaNI	GTAC	2 cut(s)	162, 271
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	347, 422
Sau3AI	GATC	1 cut(s)	188
Sau96I	GGNCC	1 cut(s)	371
SfaNI	GCATC	2 cut(s)	82, 423
SfcI	CTRYAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	431
SnaBI	TACGTA	1 cut(s)	270
SsiI	CCGC	2 cut(s)	81, 107
SspMI	CTAG	3 cut(s)	203, 207, 255
TaaI	ACNGT	3 cut(s)	25, 103, 174
TaiI	ACGT	2 cut(s)	163, 272
TaqI	TCGA	2 cut(s)	191, 381
Tru1I	TTAA	2 cut(s)	347, 422
Tru9I	TTAA	2 cut(s)	347, 422
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	4 cut(s)	97, 125, 139, 156
Tsp45I	GTSAC	4 cut(s)	97, 125, 139, 156
TspDTI	ATGAA	2 cut(s)	173, 443
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	373
XspI	CTAG	3 cut(s)	203, 207, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.