Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Forward (+)

46493294 .. 46496984

Gene Structure 3691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCAAGAAGATTTTAATATTAGGCTTGAGAGCCGAACCTCCTACTGGATTCCAGCAATCAAAATAAAAGAAAAGTCGGTGGTGAAGGTGTTTTGCGTCCACACGGAGCCGAATTTCTCGTTGCCGTGGCAGAGGAAGAGGCAGTACAGCTCGAGTAGTAGTGGGTTTGTGATTGGGGGAAGAAGGGTCTTGACCAATGTGCACTCTGTGGAGCACCATACACAGGTCAAGCTCAAGAAGCGTGGCTCCGAGACCAAGTACTTGGCTACTGTGTTGGCCATTGGGACTGAATGTGATATTGCCATGCTCACAGTGAGTGATGATGAGTTCTGGAAAGGAGTTTCACCTGTGGAGTTTGGAGAGTTGCCAGCGCTCCAAGATGCTGTGACGGTTGTGGGCTACCCTATTGGGGGTGACACAATCTCTGTGACGAGTGGTGTAGTGTCACGTATGGAGATACTTTCATATGTTCATGGATCAACTGAGCTTCTGGGACTGCAGATAGATGCTGCCATAAACTCTGGAAACTCTGGTGGGCCTGCCTTCAATGACAAGGGGACCTGTGTGGGCATTGCTTTTCAGTCTCTTAAACATGAAGATGCAGAAAATATAGGCTACGTTATTCCAACACCTGTTATCAAGCACTTCATTACAGATTACGAGAAGAATGGGGCATATACAGGGTTCCCAATTATTGGAATTGAGTGGCAAAAGATGGAAAATCCTGATCTACGCACGTCAATGGGGATGAAAGCTGATCAAAAGGGTGTGCGTATTAGAAGGATCGAACCTACAGCTCCAGATTCTCATCTTCTGCAACCATCTGATGTCATTCTTAGCTTTGATGGAGTTAATATTGCAAATGATGGCACAGTTCCATTCAGGCATGGGGAGCGCATAGGTTTCAGTTACCTCGTCTCCCAGAAATTGACTGGCGATAGTGCTGTAGTAAAAGTTCTTCGTAACTCACAGATACTTGAATTCAACATAAAACTTGGAACACACAAGCGTCTGATCCCGGCACACATCAACGGCAAACCTCCCTCCTATTATATCATCGGTGGATTTGTTTTTTCAGCTGTATCTGTTCCATATCTGCGTTCTGAGGTGTGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

372

Amino Acids

41.03

Weight (kDa)

8.22

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	39 - 217	6.2e-19	Trypsin
Trypsin_2	PF13365	54 - 191	2.3e-19	Trypsin-like peptidase domain
PDZ_3	PF17815	339 - 369	8.4e-06	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	695
AclWI	GGATC	3 cut(s)	484, 791, 1009
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	112, 980
AdeI	CACNNNGTG	1 cut(s)	208
AfaI	GTAC	2 cut(s)	146, 260
AfeI	AGCGCT	1 cut(s)	372
AfiI	CCNNNNNNNGG	5 cut(s)	45, 223, 409, 410, 695
AgsI	TTSAA	3 cut(s)	547, 980, 985
AjiI	CACGTC	1 cut(s)	738
AluBI	AGCT	7 cut(s)	150, 232, 487, 755, 797, 840, 1079
AluI	AGCT	7 cut(s)	150, 232, 487, 755, 797, 840, 1079
Alw21I	GWGCWC	2 cut(s)	204, 216
Alw26I	GTCTC	3 cut(s)	245, 588, 922
Alw44I	GTGCAC	1 cut(s)	200
AlwI	GGATC	3 cut(s)	484, 791, 1009
Ama87I	CYCGRG	1 cut(s)	151
Aor51HI	AGCGCT	1 cut(s)	372
AoxI	GGCC	2 cut(s)	276, 536
ApaLI	GTGCAC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	2 cut(s)	112, 980
AspLEI	GCGC	2 cut(s)	373, 897
AspS9I	GGNCC	2 cut(s)	536, 558
AsuC2I	CCSGG	1 cut(s)	1019
AsuHPI	GGTGA	3 cut(s)	94, 336, 425
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	558
BaeGI	GKGCMC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	278
BarI	GAAGNNNNNNTAC	4 cut(s)	128, 160, 942, 974
Bbv12I	GWGCWC	2 cut(s)	204, 216
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	4 cut(s)	709, 829, 839, 860
BceAI	ACGGC	3 cut(s)	109, 1048, 1098
BclI	TGATCA	1 cut(s)	757
BcnI	CCSGG	1 cut(s)	1019
BcoDI	GTCTC	3 cut(s)	245, 588, 922
BfmI	CTRYAG	3 cut(s)	497, 792, 945
BfoI	RGCGCY	1 cut(s)	374
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
BmcAI	AGTACT	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	1019
Bme18I	GGWCC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	738
BmgT120I	GGNCC	2 cut(s)	536, 558
BmiI	GGNNCC	4 cut(s)	108, 247, 559, 686
BmrFI	CCNGG	1 cut(s)	1019
BmsI	GCATC	3 cut(s)	370, 496, 589
BpmI	CTGGAG	1 cut(s)	783
BpuEI	CTTGAG	2 cut(s)	47, 218
BpuMI	CCSGG	1 cut(s)	1019
BsaAI	YACGTR	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	807
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	902, 932
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 223, 409, 410, 695
Bse1I	ACTGG	2 cut(s)	50, 937
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	807
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	753
BseJI	GATNNNNATC	1 cut(s)	807
BseLI	CCNNNNNNNGG	5 cut(s)	45, 223, 409, 410, 695
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	474, 1095
BseNI	ACTGG	2 cut(s)	50, 937
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	496
BshFI	GGCC	2 cut(s)	278, 538
BsiHKAI	GWGCWC	2 cut(s)	204, 216
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	1019
BslFI	GGGAC	3 cut(s)	298, 507, 571
BslI	CCNNNNNNNGG	5 cut(s)	45, 223, 409, 410, 695
BsmAI	GTCTC	3 cut(s)	245, 588, 922
BsmBI	CGTCTC	1 cut(s)	922
BsmFI	GGGAC	3 cut(s)	298, 507, 571
BsnI	GGCC	2 cut(s)	278, 538
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	204, 216
Bsp143I	GATC	5 cut(s)	476, 727, 757, 783, 1014
BspANI	GGCC	2 cut(s)	278, 538
BspCNI	CTCAG	2 cut(s)	475, 1096
BspLI	GGNNCC	4 cut(s)	108, 247, 559, 686
BspMAI	CTGCAG	1 cut(s)	501
BspPI	GGATC	3 cut(s)	484, 791, 1009
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	50, 937
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	5 cut(s)	476, 727, 757, 783, 1014
Bst4CI	ACNGT	4 cut(s)	271, 313, 391, 874
Bst6I	CTCTTC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	369, 540
BstDEI	CTNAG	3 cut(s)	483, 836, 1104
BstDSI	CCRYGG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	753
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	2 cut(s)	373, 897
BstKTI	GATC	5 cut(s)	479, 730, 760, 786, 1017
BstMAI	GTCTC	3 cut(s)	245, 588, 922
BstMBI	GATC	5 cut(s)	476, 727, 757, 783, 1014
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 892
BstSCI	CCNGG	1 cut(s)	1017
BstSFI	CTRYAG	3 cut(s)	497, 792, 945
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	278, 538
BtgI	CCRYGG	1 cut(s)	125
BtrI	CACGTC	1 cut(s)	738
BtsCI	GGATG	1 cut(s)	753
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	369, 540
CfoI	GCGC	2 cut(s)	373, 897
Cfr13I	GGNCC	2 cut(s)	536, 558
CseI	GACGC	2 cut(s)	85, 998
Csp6I	GTAC	2 cut(s)	145, 259
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	4 cut(s)	304, 473, 593, 887
CviQI	GTAC	2 cut(s)	145, 259
DdeI	CTNAG	3 cut(s)	483, 836, 1104
DpnI	GATC	5 cut(s)	478, 729, 759, 785, 1016
DpnII	GATC	5 cut(s)	476, 727, 757, 783, 1014
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	558
Eco47III	AGCGCT	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	980
Esp3I	CGTCTC	1 cut(s)	922
FaeI	CATG	4 cut(s)	307, 476, 596, 890
FaqI	GGGAC	3 cut(s)	298, 507, 571
FatI	CATG	4 cut(s)	303, 472, 592, 886
FauNDI	CATATG	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	1 cut(s)	760
Fsp4HI	GCNGC	1 cut(s)	510
GlaI	GCGC	2 cut(s)	372, 896
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	783
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	278, 538
HapII	CCGG	1 cut(s)	1019
HgaI	GACGC	2 cut(s)	85, 998
HhaI	GCGC	2 cut(s)	373, 897
Hin1II	CATG	4 cut(s)	307, 476, 596, 890
Hin6I	GCGC	2 cut(s)	371, 895
HinP1I	GCGC	2 cut(s)	371, 895
HinfI	GANTC	2 cut(s)	49, 803
HpaII	CCGG	1 cut(s)	1019
HphI	GGTGA	3 cut(s)	94, 336, 425
Hpy166II	GTNNAC	2 cut(s)	100, 202
Hpy188I	TCNGA	4 cut(s)	250, 826, 1014, 1105
Hpy188III	TCNNGA	6 cut(s)	190, 235, 331, 522, 725, 800
Hpy8I	GTNNAC	2 cut(s)	100, 202
HpyAV	CCTTC	4 cut(s)	79, 177, 553, 774
HpyCH4III	ACNGT	4 cut(s)	271, 313, 391, 874
HpyCH4IV	ACGT	3 cut(s)	448, 618, 737
HpyCH4V	TGCA	6 cut(s)	4, 202, 499, 602, 817, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 892
HpyF3I	CTNAG	3 cut(s)	483, 836, 1104
HpySE526I	ACGT	3 cut(s)	448, 618, 737
Hsp92II	CATG	4 cut(s)	307, 476, 596, 890
HspAI	GCGC	2 cut(s)	371, 895
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	5 cut(s)	476, 727, 757, 783, 1014
LmnI	GCTCC	6 cut(s)	106, 211, 251, 378, 802, 892
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	3 cut(s)	370, 496, 589
MaeII	ACGT	3 cut(s)	448, 618, 737
MaeIII	GTNAC	6 cut(s)	385, 413, 427, 444, 908, 962
MalI	GATC	5 cut(s)	478, 729, 759, 785, 1016
MboI	GATC	5 cut(s)	476, 727, 757, 783, 1014
MboII	GAAGA	7 cut(s)	20, 148, 192, 608, 676, 803, 950
MhlI	GDGCHC	2 cut(s)	204, 216
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	5 cut(s)	112, 690, 699, 926, 980
MluNI	TGGCCA	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	650
MnlI	CCTC	7 cut(s)	49, 126, 132, 923, 1050, 1054, 1099
Mox20I	TGGCCA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	3 cut(s)	15, 588, 852
MslI	CAYNNNNRTG	2 cut(s)	597, 740
Msp20I	TGGCCA	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	1079
MspI	CCGG	1 cut(s)	1019
MspR9I	CCNGG	1 cut(s)	1019
MwoI	GCNNNNNNNGC	2 cut(s)	238, 892
NciI	CCSGG	1 cut(s)	1019
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	5 cut(s)	476, 727, 757, 783, 1014
NlaIII	CATG	4 cut(s)	307, 476, 596, 890
NlaIV	GGNNCC	4 cut(s)	108, 247, 559, 686
NmuCI	GTSAC	4 cut(s)	385, 413, 427, 444
PaeR7I	CTCGAG	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	49, 803
PflMI	CCANNNNNTGG	1 cut(s)	695
PkrI	GCNGC	1 cut(s)	511
Ppu21I	YACGTR	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	558
PspN4I	GGNNCC	4 cut(s)	108, 247, 559, 686
PspPI	GGNCC	2 cut(s)	536, 558
PspPPI	RGGWCCY	1 cut(s)	558
PspXI	VCTCGAGB	1 cut(s)	151
PsrI	GAACNNNNNNTAC	2 cut(s)	939, 971
PstI	CTGCAG	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	1079
RsaI	GTAC	2 cut(s)	146, 260
RsaNI	GTAC	2 cut(s)	145, 259
RseI	CAYNNNNRTG	2 cut(s)	597, 740
SaqAI	TTAA	3 cut(s)	15, 588, 852
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	5 cut(s)	476, 727, 757, 783, 1014
Sau96I	GGNCC	2 cut(s)	536, 558
ScaI	AGTACT	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	1019
SduI	GDGCHC	2 cut(s)	204, 216
SfaNI	GCATC	3 cut(s)	370, 496, 589
SfcI	CTRYAG	3 cut(s)	497, 792, 945
Sfr274I	CTCGAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	558
SlaI	CTCGAG	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	597, 740
SmlI	CTYRAG	3 cut(s)	26, 151, 233
SmoI	CTYRAG	3 cut(s)	26, 151, 233
Sse9I	AATT	5 cut(s)	112, 690, 699, 926, 980
SspI	AATATT	2 cut(s)	19, 856
StyD4I	CCNGG	1 cut(s)	1017
TaaI	ACNGT	4 cut(s)	271, 313, 391, 874
TaiI	ACGT	3 cut(s)	451, 621, 740
TaqI	TCGA	2 cut(s)	152, 786
TasI	AATT	5 cut(s)	112, 690, 699, 926, 980
TatI	WGTACW	2 cut(s)	144, 258
TfiI	GAWTC	2 cut(s)	49, 803
Tru1I	TTAA	3 cut(s)	15, 588, 852
Tru9I	TTAA	3 cut(s)	15, 588, 852
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	4 cut(s)	385, 413, 427, 444
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	4 cut(s)	385, 413, 427, 444
TspDTI	ATGAA	5 cut(s)	453, 461, 609, 637, 764
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	318
Van91I	CCANNNNNTGG	1 cut(s)	695
VneI	GTGCAC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	558
XapI	RAATTY	2 cut(s)	112, 980
XcmI	CCANNNNNNNNNTGG	1 cut(s)	929
XhoI	CTCGAG	1 cut(s)	151
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.