Rmu_sc0003787.1_g000010

Protease Do-like 9

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003787.1
Physical Location & Seq
Reverse (-)
47689 .. 50633
2945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003787.1_g000010.1.cds

Sequence Viewer

Length: 1734 bp
atgtatctccaattcatcaatcccacaagcacaaccaccgccctaaatgacaaccttcccatctccaagatagtttcttcattgccgcaacaatcaccacttgttcaccaaaacggtgactcgggtgttgtctcggagccggagccgatggtgcagaggtgggagggtggtggcgggagagtggtgccggcgatggacgcggtggtgaaggtgttttgtgttcatacggagccgaatttctcgttgccgtggcagaggaagaagcagtacagttcgagtagtagtgggtttgtgattaggggcaggagggtcttgaccaatgcgcattctgtggatcatcatacacaggtcaaggtcaagaagcgtggctctgacaccaagtacttggccactgtgttggccattggaaccgagtgtgatattgcaatgcttacggtgagtgatgatgagttctgggaagggatttcacctgtggagtttgggaacttgcctgcgctgcaagatgctgtgactgttgtgggctatcctattgggggtgacacaatctctgtgacgagtggtgttgtgtcacgcatggagatactttcttatgttcatggctccactgagcttctgggaatgcagatagatgctgcaataaactctggaaactccggtgggccggcgtttaatgataagggaaaatgtgtggggattgcattccagtctctcaagcatgaagatgtggaaaatataggctatgtcataccaataccagttattatgcacttcattttggattatgagaagaacgggtcatatacagggttcccaattcttggaattgagtggcagaagatggaaaatcctgatctgcgcatgtcaatggggatgggacctgatcaaaagggtgtgcgaatcagaagaatggagcctacttctccagaatctcttgttctgaaaccatctgatgttattcttagctttgatggggttaatattgctaatgatggcacagttccattcaggcatggagagcgcataggtttcagttaccttgtctcccaaaaatacattggggataatgcgctagtcaaagttctaagaaactcagagacacttgaattcaacataaaactagcaaaacacaaggaactgatcccgtcacacatagagggaaaacctccttcttattacatcattgctggatttgttttcacagctgtatctgttccatatctgcgttctgagtttggaaatatatttgatgttccaatcaaattattggacaagcatttacatgcaatggcacagtctattgatgaacaacttgttgttgtttctcaggtacttgttgctgacattaatattggatatgaggatattgttaacaatcaggtacttgttgctgacattaatattggatatgaggatattgttaacaatcaggttcttgacttcaatggtaagcctgtgaagaacctgaagagcttagccaagatggtcgagaattgtgatgacgagtacctaaagtttagcctagaatataatcagatggttgttctacagacaaaaactgccaaggcagcaacactagatatcctcacaacgcattgcatatcttcgtccatgtctgatgaccttaagactaaagacattatgttacaggaagtagagtctttgtctgatgaccttaagactaagatattagaggaagaacaaatgcttacttctcctttagctgtatctacatag

Protein Analysis

577

Amino Acids

63.56

Weight (kDa)

5.18

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 324, 857
AccB1I GGYRCC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 818
AccII CGCG 1 cut(s) 200
AciI CCGC 4 cut(s) 39, 86, 174, 200
AclWI GGATC 2 cut(s) 342, 1132
AcoI YGGCCR 2 cut(s) 387, 399
AcsI RAATTY 2 cut(s) 235, 1103
AcuI CTGAAG 1 cut(s) 1484
AfaI GTAC 5 cut(s) 269, 383, 1329, 1380, 1505
AfiI CCNNNNNNNGG 2 cut(s) 533, 818
AflII CTTAAG 2 cut(s) 1622, 1673
AgsI TTSAA 3 cut(s) 1103, 1108, 1441
AluBI AGCT 5 cut(s) 610, 963, 1202, 1470, 1721
AluI AGCT 5 cut(s) 610, 963, 1202, 1470, 1721
Alw26I GTCTC 4 cut(s) 136, 711, 1045, 1088
AlwI GGATC 2 cut(s) 342, 1132
Ama87I CYCGRG 1 cut(s) 121
AoxI GGCC 3 cut(s) 387, 399, 659
ApeKI GCWGC 3 cut(s) 496, 632, 1565
ApoI RAATTY 2 cut(s) 235, 1103
AseI ATTAAT 2 cut(s) 1344, 1395
AspLEI GCGC 5 cut(s) 325, 496, 858, 1020, 1069
AspS9I GGNCC 2 cut(s) 659, 875
AsuHPI GGTGA 7 cut(s) 87, 98, 128, 217, 448, 459, 548
AvaI CYCGRG 1 cut(s) 121
AvaII GGWCC 1 cut(s) 875
BaeI ACNNNNGTAYC 2 cut(s) 1188, 1221
BalI TGGCCA 2 cut(s) 389, 401
BanI GGYRCC 1 cut(s) 184
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
BbvI GCAGC 3 cut(s) 483, 619, 1577
BceAI ACGGC 1 cut(s) 232
BclI TGATCA 1 cut(s) 880
BcoDI GTCTC 4 cut(s) 136, 711, 1045, 1088
BfaI CTAG 4 cut(s) 1070, 1118, 1520, 1574
BfmI CTRYAG 1 cut(s) 1544
BfrI CTTAAG 2 cut(s) 1622, 1673
BisI GCNGC 4 cut(s) 86, 497, 633, 1566
BlpI GCTNAGC 1 cut(s) 1471
BlsI GCNGC 4 cut(s) 87, 498, 634, 1567
BmcAI AGTACT 1 cut(s) 383
Bme18I GGWCC 1 cut(s) 875
BmeT110I CYCGRG 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 659, 875
BmiI GGNNCC 9 cut(s) 138, 144, 186, 231, 409, 601, 809, 876, 912
BmsI GCATC 2 cut(s) 493, 619
BpmI CTGGAG 1 cut(s) 906
Bpu1102I GCTNAGC 1 cut(s) 1471
BpuEI CTTGAG 1 cut(s) 695
BsaJI CCNNGG 2 cut(s) 248, 1560
BsaWI WCCGGW 1 cut(s) 653
BsaXI ACNNNNNCTCC 2 cut(s) 1025, 1055
Bsc4I CCNNNNNNNGG 2 cut(s) 533, 818
Bse118I RCCGGY 2 cut(s) 187, 661
Bse1I ACTGG 2 cut(s) 703, 755
Bse3DI GCAATG 5 cut(s) 80, 432, 1179, 1290, 1591
BseDI CCNNGG 2 cut(s) 248, 1560
BseGI GGATG 1 cut(s) 876
BseLI CCNNNNNNNGG 2 cut(s) 533, 818
BseMI GCAATG 5 cut(s) 80, 432, 1179, 1290, 1591
BseMII CTCAG 4 cut(s) 597, 1104, 1218, 1337
BseNI ACTGG 2 cut(s) 703, 755
BseXI GCAGC 3 cut(s) 483, 619, 1577
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 3 cut(s) 389, 401, 661
BshNI GGYRCC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 4 cut(s) 140, 188, 654, 662
BslFI GGGAC 1 cut(s) 888
BslI CCNNNNNNNGG 2 cut(s) 533, 818
BsmAI GTCTC 4 cut(s) 136, 711, 1045, 1088
BsmFI GGGAC 1 cut(s) 888
BsmI GAATGC 3 cut(s) 325, 624, 698
BsnI GGCC 3 cut(s) 389, 401, 661
BsoBI CYCGRG 1 cut(s) 121
Bsp143I GATC 4 cut(s) 334, 850, 880, 1137
Bsp1720I GCTNAGC 1 cut(s) 1471
BspACI CCGC 4 cut(s) 39, 86, 174, 200
BspANI GGCC 3 cut(s) 389, 401, 661
BspCNI CTCAG 4 cut(s) 598, 1103, 1219, 1336
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 9 cut(s) 138, 144, 186, 231, 409, 601, 809, 876, 912
BspPI GGATC 2 cut(s) 342, 1132
BspQI GCTCTTC 1 cut(s) 1460
BspT107I GGYRCC 1 cut(s) 184
BspTI CTTAAG 2 cut(s) 1622, 1673
BsrDI GCAATG 5 cut(s) 80, 432, 1179, 1290, 1591
BsrFI RCCGGY 2 cut(s) 187, 661
BsrI ACTGG 2 cut(s) 703, 755
BssAI RCCGGY 2 cut(s) 187, 661
BssECI CCNNGG 2 cut(s) 248, 1560
BssMI GATC 4 cut(s) 334, 850, 880, 1137
BssT1I CCWWGG 1 cut(s) 1560
Bst4CI ACNGT 7 cut(s) 116, 272, 394, 436, 514, 997, 1293
Bst6I CTCTTC 1 cut(s) 1460
BstAFI CTTAAG 2 cut(s) 1622, 1673
BstC8I GCNNGC 3 cut(s) 189, 492, 663
BstDEI CTNAG 8 cut(s) 606, 959, 1082, 1090, 1227, 1323, 1471, 1680
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 876
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 5 cut(s) 325, 496, 858, 1020, 1069
BstKTI GATC 4 cut(s) 337, 853, 883, 1140
BstMAI GTCTC 4 cut(s) 136, 711, 1045, 1088
BstMBI GATC 4 cut(s) 334, 850, 880, 1137
BstMWI GCNNNNNNNGC 5 cut(s) 151, 197, 496, 1015, 1565
BstNSI RCATGY 2 cut(s) 862, 1283
BstSFI CTRYAG 1 cut(s) 1544
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 483, 619, 1577
BstXI CCANNNNNNTGG 2 cut(s) 385, 397
BsuRI GGCC 3 cut(s) 389, 401, 661
BtgI CCRYGG 1 cut(s) 248
BtgZI GCGATG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 876
BtsIMutI CAGTG 2 cut(s) 390, 603
Cac8I GCNNGC 3 cut(s) 189, 492, 663
CfoI GCGC 5 cut(s) 325, 496, 858, 1020, 1069
Cfr10I RCCGGY 2 cut(s) 187, 661
Cfr13I GGNCC 2 cut(s) 659, 875
CseI GACGC 1 cut(s) 206
Csp6I GTAC 5 cut(s) 268, 382, 1328, 1379, 1504
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 7 cut(s) 574, 596, 716, 859, 1010, 1280, 1609
CviQI GTAC 5 cut(s) 268, 382, 1328, 1379, 1504
DdeI CTNAG 8 cut(s) 606, 959, 1082, 1090, 1227, 1323, 1471, 1680
DpnI GATC 4 cut(s) 336, 852, 882, 1139
DpnII GATC 4 cut(s) 334, 850, 880, 1137
EaeI YGGCCR 2 cut(s) 387, 399
Eam1104I CTCTTC 1 cut(s) 1460
EarI CTCTTC 1 cut(s) 1460
Eco130I CCWWGG 1 cut(s) 1560
Eco32I GATATC 1 cut(s) 1579
Eco47I GGWCC 1 cut(s) 875
Eco57I CTGAAG 1 cut(s) 1484
Eco88I CYCGRG 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 875
EcoRI GAATTC 1 cut(s) 1103
EcoRV GATATC 1 cut(s) 1579
EcoT14I CCWWGG 1 cut(s) 1560
ErhI CCWWGG 1 cut(s) 1560
FaeI CATG 7 cut(s) 577, 599, 719, 862, 1013, 1283, 1612
FaqI GGGAC 1 cut(s) 888
FatI CATG 7 cut(s) 573, 595, 715, 858, 1009, 1279, 1608
FauI CCCGC 1 cut(s) 167
FbaI TGATCA 1 cut(s) 880
Fnu4HI GCNGC 4 cut(s) 86, 497, 633, 1566
FokI GGATG 1 cut(s) 883
Fsp4HI GCNGC 4 cut(s) 86, 497, 633, 1566
FspAI RTGCGCAY 1 cut(s) 324
FspBI CTAG 4 cut(s) 1070, 1118, 1520, 1574
FspI TGCGCA 2 cut(s) 324, 857
GlaI GCGC 5 cut(s) 324, 495, 857, 1019, 1068
GluI GCNGC 4 cut(s) 86, 497, 633, 1566
GsuI CTGGAG 1 cut(s) 906
HaeIII GGCC 3 cut(s) 389, 401, 661
HapII CCGG 4 cut(s) 140, 188, 654, 662
HgaI GACGC 1 cut(s) 206
HhaI GCGC 5 cut(s) 325, 496, 858, 1020, 1069
Hin1II CATG 7 cut(s) 577, 599, 719, 862, 1013, 1283, 1612
Hin6I GCGC 5 cut(s) 323, 494, 856, 1018, 1067
HinP1I GCGC 5 cut(s) 323, 494, 856, 1018, 1067
HincII GTYRAC 2 cut(s) 1369, 1420
HindII GTYRAC 2 cut(s) 1369, 1420
HinfI GANTC 4 cut(s) 119, 897, 926, 1655
HpaI GTTAAC 2 cut(s) 1369, 1420
HpaII CCGG 4 cut(s) 140, 188, 654, 662
HphI GGTGA 7 cut(s) 87, 98, 128, 217, 448, 459, 548
Hpy166II GTNNAC 3 cut(s) 106, 1369, 1420
Hpy188III TCNNGA 7 cut(s) 313, 358, 645, 848, 923, 1433, 1486
Hpy8I GTNNAC 3 cut(s) 106, 1369, 1420
HpyAV CCTTC 4 cut(s) 65, 202, 452, 1176
HpyCH4III ACNGT 7 cut(s) 116, 272, 394, 436, 514, 997, 1293
HpyCH4V TGCA 9 cut(s) 154, 425, 499, 622, 635, 698, 766, 1283, 1596
HpyF10VI GCNNNNNNNGC 5 cut(s) 151, 197, 496, 1015, 1565
HpyF3I CTNAG 8 cut(s) 606, 959, 1082, 1090, 1227, 1323, 1471, 1680
Hsp92II CATG 7 cut(s) 577, 599, 719, 862, 1013, 1283, 1612
HspAI GCGC 5 cut(s) 323, 494, 856, 1018, 1067
KroI GCCGGC 2 cut(s) 187, 661
KroNI GCCGGC 2 cut(s) 189, 663
Ksp22I TGATCA 1 cut(s) 880
KspAI GTTAAC 2 cut(s) 1369, 1420
Kzo9I GATC 4 cut(s) 334, 850, 880, 1137
LguI GCTCTTC 1 cut(s) 1460
LmnI GCTCC 5 cut(s) 136, 142, 229, 605, 910
Lsp1109I GCAGC 3 cut(s) 483, 619, 1577
LweI GCATC 2 cut(s) 493, 619
MaeI CTAG 4 cut(s) 1070, 1118, 1520, 1574
MaeIII GTNAC 8 cut(s) 116, 508, 536, 550, 567, 1031, 1143, 1641
MalI GATC 4 cut(s) 336, 852, 882, 1139
MboI GATC 4 cut(s) 334, 850, 880, 1137
MlsI TGGCCA 2 cut(s) 389, 401
MluCI AATT 7 cut(s) 11, 235, 813, 822, 1103, 1259, 1489
MluNI TGGCCA 2 cut(s) 389, 401
MlyI GAGTC 2 cut(s) 113, 1664
Mox20I TGGCCA 2 cut(s) 389, 401
MroNI GCCGGC 2 cut(s) 187, 661
MscI TGGCCA 2 cut(s) 389, 401
MseI TTAA 8 cut(s) 669, 975, 1344, 1368, 1395, 1419, 1623, 1674
MslI CAYNNNNRTG 3 cut(s) 720, 863, 1278
Msp20I TGGCCA 2 cut(s) 389, 401
MspA1I CMGCKG 1 cut(s) 1202
MspCI CTTAAG 2 cut(s) 1622, 1673
MspI CCGG 4 cut(s) 140, 188, 654, 662
Mva1269I GAATGC 3 cut(s) 325, 624, 698
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 5 cut(s) 151, 197, 496, 1015, 1565
NaeI GCCGGC 2 cut(s) 189, 663
NdeII GATC 4 cut(s) 334, 850, 880, 1137
NgoMIV GCCGGC 2 cut(s) 187, 661
NlaIII CATG 7 cut(s) 577, 599, 719, 862, 1013, 1283, 1612
NlaIV GGNNCC 9 cut(s) 138, 144, 186, 231, 409, 601, 809, 876, 912
NmuCI GTSAC 6 cut(s) 116, 508, 536, 550, 567, 1143
NsbI TGCGCA 2 cut(s) 324, 857
NspI RCATGY 2 cut(s) 862, 1283
PciSI GCTCTTC 1 cut(s) 1460
PctI GAATGC 3 cut(s) 325, 624, 698
PdiI GCCGGC 2 cut(s) 189, 663
PfeI GAWTC 2 cut(s) 897, 926
PflMI CCANNNNNTGG 1 cut(s) 818
PkrI GCNGC 4 cut(s) 87, 498, 634, 1567
PleI GAGTC 2 cut(s) 113, 1663
PpsI GAGTC 2 cut(s) 113, 1663
PpuMI RGGWCCY 1 cut(s) 875
PshBI ATTAAT 2 cut(s) 1344, 1395
Psp5II RGGWCCY 1 cut(s) 875
PspN4I GGNNCC 9 cut(s) 138, 144, 186, 231, 409, 601, 809, 876, 912
PspPI GGNCC 2 cut(s) 659, 875
PspPPI RGGWCCY 1 cut(s) 875
PvuII CAGCTG 1 cut(s) 1202
RsaI GTAC 5 cut(s) 269, 383, 1329, 1380, 1505
RsaNI GTAC 5 cut(s) 268, 382, 1328, 1379, 1504
RseI CAYNNNNRTG 3 cut(s) 720, 863, 1278
SapI GCTCTTC 1 cut(s) 1460
SaqAI TTAA 8 cut(s) 669, 975, 1344, 1368, 1395, 1419, 1623, 1674
SatI GCNGC 4 cut(s) 86, 497, 633, 1566
Sau3AI GATC 4 cut(s) 334, 850, 880, 1137
Sau96I GGNCC 2 cut(s) 659, 875
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 2 cut(s) 113, 1664
SfaNI GCATC 2 cut(s) 493, 619
SfcI CTRYAG 1 cut(s) 1544
SinI GGWCC 1 cut(s) 875
SmiMI CAYNNNNRTG 3 cut(s) 720, 863, 1278
SmlI CTYRAG 3 cut(s) 710, 1622, 1673
SmoI CTYRAG 3 cut(s) 710, 1622, 1673
Sse9I AATT 7 cut(s) 11, 235, 813, 822, 1103, 1259, 1489
SsiI CCGC 4 cut(s) 39, 86, 174, 200
SspI AATATT 3 cut(s) 979, 1348, 1399
SspMI CTAG 4 cut(s) 1070, 1118, 1520, 1574
StyI CCWWGG 1 cut(s) 1560
TaaI ACNGT 7 cut(s) 116, 272, 394, 436, 514, 997, 1293
TaqI TCGA 2 cut(s) 275, 1485
TasI AATT 7 cut(s) 11, 235, 813, 822, 1103, 1259, 1489
TatI WGTACW 2 cut(s) 267, 381
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 2 cut(s) 897, 926
Tru1I TTAA 8 cut(s) 669, 975, 1344, 1368, 1395, 1419, 1623, 1674
Tru9I TTAA 8 cut(s) 669, 975, 1344, 1368, 1395, 1419, 1623, 1674
TscAI CASTG 2 cut(s) 397, 610
TseFI GTSAC 6 cut(s) 116, 508, 536, 550, 567, 1143
TseI GCWGC 3 cut(s) 496, 632, 1565
Tsp45I GTSAC 6 cut(s) 116, 508, 536, 550, 567, 1143
TspDTI ATGAA 7 cut(s) 4, 69, 212, 584, 732, 760, 1317
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 2 cut(s) 397, 610
Van91I CCANNNNNTGG 1 cut(s) 818
Vha464I CTTAAG 2 cut(s) 1622, 1673
VpaK11BI GGWCC 1 cut(s) 875
VspI ATTAAT 2 cut(s) 1344, 1395
XapI RAATTY 2 cut(s) 235, 1103
XceI RCATGY 2 cut(s) 862, 1283
XcmI CCANNNNNNNNNTGG 2 cut(s) 610, 1052
XspI CTAG 4 cut(s) 1070, 1118, 1520, 1574
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.