Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Reverse (-)

67766559 .. 67767066

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0550300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCATTGGTTTGCACCGCTAAAGTCACAATAAAAGCGATACTAGTGGGATGTAAGGGTGGGTTTGATAATGTGGCAACACTGGTGGATGTTGGTGGTGGGACTGGAAGCGCAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAAGGGCATCAACTTTGATCTACCACATGTAGTTGCAACAGCGCCGGTGTACCATGGGGTGTCACATGTTGGAGAATTAAAATTGCAGTGGATTATGCACCACTGGAGCGACAGTGATTGCGTCAAGATATTGAAGAATTGTCGAAAGGCATTAATACTGGAGAGCAGTGGCAAGGTGATTATTGTGGACGTTGTTCTAGAGCCAAATGGTAATGGCATGTTCGACGACACAGGCTTGACAAAGGACAATGGTGATGGCCCTATTTTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

139

Amino Acids

14.71

Weight (kDa)

6.16

Isoelectric Point (pI)

18.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_2	PF00891	8 - 125	1.7e-26	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	18, 119
AfaI	GTAC	1 cut(s)	197
AflIII	ACRYGT	2 cut(s)	172, 211
AgsI	TTSAA	2 cut(s)	280, 416
AhlI	ACTAGT	1 cut(s)	43
AoxI	GGCC	1 cut(s)	403
AseI	ATTAAT	1 cut(s)	299
AspLEI	GCGC	2 cut(s)	113, 190
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	334, 410
BccI	CCATC	1 cut(s)	395
BciVI	GTATCC	1 cut(s)	147
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	2 cut(s)	44, 344
BfoI	RGCGCY	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	404
BmsI	GCATC	1 cut(s)	162
BpmI	CTGGAG	2 cut(s)	271, 326
BsaJI	CCNNGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	4 cut(s)	87, 109, 254, 309
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	56, 94
BseNI	ACTGG	4 cut(s)	87, 109, 254, 309
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	163
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	2 cut(s)	18, 119
BspANI	GGCC	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	4 cut(s)	87, 109, 254, 309
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	260
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	56, 94
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	2 cut(s)	113, 190
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNSI	RCATGY	3 cut(s)	176, 215, 367
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	56, 94
BtsI	GCAGTG	3 cut(s)	120, 239, 319
BtsIMutI	CAGTG	6 cut(s)	80, 120, 239, 247, 265, 319
CfoI	GCGC	2 cut(s)	113, 190
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	404
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	196
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviAII	CATG	4 cut(s)	173, 200, 212, 364
CviJI	RGCY	3 cut(s)	349, 381, 405
CviKI_1	RGCY	3 cut(s)	349, 381, 405
CviQI	GTAC	1 cut(s)	196
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	4 cut(s)	176, 203, 215, 367
FaiI	YATR	5 cut(s)	174, 201, 213, 242, 365
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	172, 199, 211, 363
FokI	GGATG	2 cut(s)	63, 101
FspBI	CTAG	2 cut(s)	44, 344
GlaI	GCGC	2 cut(s)	112, 189
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	2 cut(s)	271, 326
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	191
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	2 cut(s)	113, 190
Hin1II	CATG	4 cut(s)	176, 203, 215, 367
Hin6I	GCGC	2 cut(s)	111, 188
HinP1I	GCGC	2 cut(s)	111, 188
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	2 cut(s)	334, 410
Hpy166II	GTNNAC	2 cut(s)	196, 334
Hpy188III	TCNNGA	2 cut(s)	271, 344
Hpy8I	GTNNAC	2 cut(s)	196, 334
Hpy99I	CGWCG	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	4 cut(s)	15, 182, 232, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	176, 203, 215, 367
HspAI	GCGC	2 cut(s)	111, 188
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	7 cut(s)	68, 90, 154, 204, 235, 290, 363
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	44, 344
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	25, 207
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	292
MluCI	AATT	3 cut(s)	221, 227, 283
MmeI	TCCRAC	1 cut(s)	196
MseI	TTAA	3 cut(s)	147, 224, 299
MspI	CCGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	4 cut(s)	176, 203, 215, 367
NmuCI	GTSAC	2 cut(s)	25, 207
NspI	RCATGY	3 cut(s)	176, 215, 367
PciI	ACATGT	2 cut(s)	172, 211
PscI	ACATGT	2 cut(s)	172, 211
PshBI	ATTAAT	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	404
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	3 cut(s)	147, 224, 299
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	404
SetI	ASST	2 cut(s)	324, 339
SfaNI	GCATC	1 cut(s)	162
SgrAI	CRCCGGYG	1 cut(s)	190
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	3 cut(s)	221, 227, 283
SsiI	CCGC	2 cut(s)	18, 119
SspMI	CTAG	2 cut(s)	44, 344
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	289, 369
TasI	AATT	3 cut(s)	221, 227, 283
Tru1I	TTAA	3 cut(s)	147, 224, 299
Tru9I	TTAA	3 cut(s)	147, 224, 299
TscAI	CASTG	6 cut(s)	87, 120, 239, 254, 265, 319
TseFI	GTSAC	2 cut(s)	25, 207
Tsp45I	GTSAC	2 cut(s)	25, 207
TspRI	CASTG	6 cut(s)	87, 120, 239, 254, 265, 319
VspI	ATTAAT	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	343
XceI	RCATGY	3 cut(s)	176, 215, 367
XspI	CTAG	2 cut(s)	44, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.