Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Reverse (-)

2265583 .. 2268759

Gene Structure 3177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1037000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

ATGCATATCCAACACATCAGTCCCGCGAGCGCCGCCACCGTGAGCGACGCCGTTTCCCTCCCTCCCGCAACCGGGCTCCTCAGCTCCGAGCCCATCAAGATATCGGCTTTCGGACTCCCCGACCAAAACGGCACTTGTGGGAGCGATTTGTCGGTCGTTTCGGAGCCGCTGATGACGGTGCCGAGGTGGGAGAGGGTGGGGAGAGTTGTCCCGTCCATGGACGCGGTGGTGAAGGTGTTCTGCGTCCACACGGAGCCGAATTTCTCGCTTCCGTGGCAGAGGAAGAAGCAGTACAGCTCCAGCAGTAGTGGGTTTGTGATTCGGGGCAGGAGGGTTTTGACCAACGCGCATTCGGTGGATCACCATACCCAGGTCAAGCTCAAGAAACGGGGCTCCGATACCAAGTACTTGGCCACCGTGTTGGCCATTGGAACCGAATGCGATATCGCGATGCTTACGGTGAGTGATGATGAGTTCTGGGAAGGGATTTCACCTGTGGAGTTTGGAGATTTACCAGCACTCCAAGATTCCGTGACTGTTGTTGGGTACCCGATTGGGGGCGACACAATCTCCGTGACAAGCGGAGTTGTGTCGCGAATGGAGATACTGCCTTATGTCCATGGCTCTACTGAGCTTCTGGGAATGCAGATAGATGCTGCAATCAACTCTGGAAACTCTGGTGGGCCTGCCTTTAATGATAAGGGAGAATGTGTGGGAATTGCATTCCAGTCCCTCAAACACGAAGATGCGGAAAATATAGGCTACGTTATACCAGTACCAGTTATTATGCACTTTATTCAAGATTATGAGAAGAATGGCGTATATACAGGGTTTCCAATTCTCGGGATTAAGTGGCAAAAGATGGAGAATCCTGATCTTCGTATGTCAATGGGAATGAGACCTGATCAAAAGGGTATCCGAATTAGAAGGCTAGAACCTACAGCTCTAGAATCTCAACTGCTAAAGCCATCTGATATTATTCTTAGTTTTGATGGGGTTAACATTGCTAGTGATGGCACAGTTCCATTCAGGCATGGAGAGCGCATAGGTTTCAGTTACCTTGTCTCTGAAAAATACATAGGTGACAATGCCCTAGTAAAAGTTCTTCGTAACTCAGAGACACTTGAGTTTAGCATTAAACTAGCAAAACACAAGGAGCTCATCCCTTCACACATTGAGGGAAAACCTCCCTCCTATTATATCGTTGCTGGATTTGTTTTGACAGCTGTATCCCTTCCATATCTGCGTTCTGAGTTTGGAAATATATTTGATGTTCCAATTAAACTGTTGGACAAGCATTTACATGCAATGGCGCAGTCTATTGATGAACAGCTCGTTGTTGTTTCTCAGGTACTTGTTGCTGACATTAATATTGGATATGAGGACATCGTTAACAATCAGGTTCTTAGTTTCAATGATATGCCTGTGAAGAATCTGAAGAGCTTGGCTATCATGGTTGAGAATTGTGATGATGAGTACCTAAAGTTTGGCCTTGAATACAATCAGATGGTTGTTCTACAAACAAAAGCTGCCAAGGCAGCGATGCTGGATATCCTCACAACACATTGCATATCATCATCCATGTCTGATGATCTTAAGACTAAAGAGAATGCTTTAGAGGAAGTAAACTCTATGGCCGATGACCTTAGAGATACGATCTTAGAGAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

558

Amino Acids

61.16

Weight (kDa)

5.27

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	88 - 266	1.2e-19	Trypsin
Trypsin_2	PF13365	103 - 240	6.2e-21	Trypsin-like peptidase domain
PDZ_3	PF17815	388 - 531	7.1e-41	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	2 cut(s)	178, 546
AccII	CGCG	5 cut(s)	26, 224, 347, 449, 595
AciI	CCGC	7 cut(s)	24, 33, 66, 167, 224, 582, 749
AclWI	GGATC	1 cut(s)	366
AcoI	YGGCCR	3 cut(s)	411, 423, 1635
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	1457
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	6 cut(s)	293, 407, 548, 777, 1353, 1478
AfiI	CCNNNNNNNGG	7 cut(s)	71, 72, 217, 370, 556, 557, 842
AflII	CTTAAG	1 cut(s)	1595
AgsI	TTSAA	3 cut(s)	800, 1414, 1496
AjnI	CCWGG	1 cut(s)	369
Alw21I	GWGCWC	1 cut(s)	1161
Alw26I	GTCTC	3 cut(s)	892, 1069, 1112
AlwI	GGATC	1 cut(s)	366
Ama87I	CYCGRG	1 cut(s)	842
AoxI	GGCC	5 cut(s)	411, 423, 683, 1489, 1635
ApeKI	GCWGC	3 cut(s)	656, 1529, 1538
ApoI	RAATTY	1 cut(s)	259
AseI	ATTAAT	1 cut(s)	1368
Asp700I	GAANNNNTTC	1 cut(s)	236
Asp718I	GGTACC	1 cut(s)	546
AspLEI	GCGC	4 cut(s)	32, 349, 1044, 1315
AspS9I	GGNCC	1 cut(s)	683
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	5 cut(s)	241, 353, 472, 483, 1094
AvaI	CYCGRG	1 cut(s)	842
BaeI	ACNNNNGTAYC	2 cut(s)	1212, 1245
BalI	TGGCCA	2 cut(s)	413, 425
BanI	GGYRCC	2 cut(s)	178, 546
BanII	GRGCYC	4 cut(s)	78, 93, 395, 1161
BarI	GAAGNNNNNNTAC	4 cut(s)	275, 307, 1089, 1121
Bbv12I	GWGCWC	1 cut(s)	1161
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	643, 1516, 1550
BccI	CCATC	6 cut(s)	101, 856, 976, 986, 1007, 1501
BceAI	ACGGC	2 cut(s)	35, 145
BciT130I	CCWGG	1 cut(s)	371
BciVI	GTATCC	2 cut(s)	926, 1240
BclI	TGATCA	1 cut(s)	904
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	3 cut(s)	892, 1069, 1112
BfaI	CTAG	5 cut(s)	932, 947, 1008, 1094, 1142
BfmI	CTRYAG	1 cut(s)	939
BfoI	RGCGCY	1 cut(s)	33
BfrI	CTTAAG	1 cut(s)	1595
BfuI	GTATCC	2 cut(s)	926, 1240
BisI	GCNGC	5 cut(s)	33, 167, 657, 1530, 1539
BlsI	GCNGC	5 cut(s)	34, 168, 658, 1531, 1540
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	73, 371
BmeT110I	CYCGRG	1 cut(s)	842
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	7 cut(s)	77, 165, 180, 255, 394, 433, 548
BmrFI	CCNGG	2 cut(s)	73, 371
BmsI	GCATC	4 cut(s)	441, 643, 736, 1533
BpmI	CTGGAG	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	2 cut(s)	365, 1145
BpuMI	CCSGG	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	892
BsaJI	CCNNGG	6 cut(s)	182, 216, 272, 369, 619, 1533
BsaXI	ACNNNNNCTCC	6 cut(s)	504, 534, 554, 584, 696, 726
Bsc4I	CCNNNNNNNGG	7 cut(s)	71, 72, 217, 370, 556, 557, 842
Bse1I	ACTGG	3 cut(s)	727, 773, 779
Bse3DI	GCAATG	3 cut(s)	1002, 1314, 1564
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	6 cut(s)	182, 216, 272, 369, 619, 1533
BseGI	GGATG	2 cut(s)	1161, 1577
BseLI	CCNNNNNNNGG	7 cut(s)	71, 72, 217, 370, 556, 557, 842
BseMI	GCAATG	3 cut(s)	1002, 1314, 1564
BseMII	CTCAG	5 cut(s)	94, 621, 1128, 1242, 1361
BseNI	ACTGG	3 cut(s)	727, 773, 779
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	643, 1516, 1550
Bsh1236I	CGCG	5 cut(s)	26, 224, 347, 449, 595
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	5 cut(s)	413, 425, 685, 1491, 1637
BshNI	GGYRCC	2 cut(s)	178, 546
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	1161
BsiHKCI	CYCGRG	1 cut(s)	842
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	3 cut(s)	6, 194, 715
BslI	CCNNNNNNNGG	7 cut(s)	71, 72, 217, 370, 556, 557, 842
BsmAI	GTCTC	3 cut(s)	892, 1069, 1112
BsmFI	GGGAC	3 cut(s)	6, 194, 715
BsmI	GAATGC	5 cut(s)	349, 443, 648, 722, 1615
BsnI	GGCC	5 cut(s)	413, 425, 685, 1491, 1637
Bso31I	GGTCTC	1 cut(s)	892
BsoBI	CYCGRG	1 cut(s)	842
Bsp1286I	GDGCHC	4 cut(s)	78, 93, 395, 1161
Bsp143I	GATC	5 cut(s)	358, 874, 904, 1591, 1656
Bsp19I	CCATGG	2 cut(s)	216, 619
Bsp68I	TCGCGA	2 cut(s)	449, 595
BspACI	CCGC	7 cut(s)	24, 33, 66, 167, 224, 582, 749
BspANI	GGCC	5 cut(s)	413, 425, 685, 1491, 1637
BspCNI	CTCAG	5 cut(s)	93, 622, 1127, 1243, 1360
BspFNI	CGCG	5 cut(s)	26, 224, 347, 449, 595
BspLI	GGNNCC	7 cut(s)	77, 165, 180, 255, 394, 433, 548
BspPI	GGATC	1 cut(s)	366
BspQI	GCTCTTC	1 cut(s)	1433
BspT107I	GGYRCC	2 cut(s)	178, 546
BspTI	CTTAAG	1 cut(s)	1595
BspTNI	GGTCTC	1 cut(s)	892
BsrDI	GCAATG	3 cut(s)	1002, 1314, 1564
BsrI	ACTGG	3 cut(s)	727, 773, 779
BssECI	CCNNGG	6 cut(s)	182, 216, 272, 369, 619, 1533
BssMI	GATC	5 cut(s)	358, 874, 904, 1591, 1656
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	3 cut(s)	216, 619, 1533
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	7 cut(s)	40, 178, 418, 460, 538, 1021, 1287
Bst6I	CTCTTC	1 cut(s)	1433
BstACI	GRCGYC	1 cut(s)	48
BstAFI	CTTAAG	1 cut(s)	1595
BstC8I	GCNNGC	2 cut(s)	28, 687
BstDEI	CTNAG	9 cut(s)	80, 630, 983, 1114, 1251, 1347, 1406, 1646, 1660
BstDSI	CCRYGG	3 cut(s)	216, 272, 619
BstF5I	GGATG	2 cut(s)	1161, 1577
BstFNI	CGCG	5 cut(s)	26, 224, 347, 449, 595
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	4 cut(s)	32, 349, 1044, 1315
BstKTI	GATC	5 cut(s)	361, 877, 907, 1594, 1659
BstMAI	GTCTC	3 cut(s)	892, 1069, 1112
BstMBI	GATC	5 cut(s)	358, 874, 904, 1591, 1656
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 274, 1039, 1535, 1538
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	1307
BstSCI	CCNGG	2 cut(s)	71, 369
BstSFI	CTRYAG	1 cut(s)	939
BstUI	CGCG	5 cut(s)	26, 224, 347, 449, 595
BstV1I	GCAGC	3 cut(s)	643, 1516, 1550
BstXI	CCANNNNNNTGG	2 cut(s)	409, 421
BsuI	GTATCC	2 cut(s)	926, 1240
BsuRI	GGCC	5 cut(s)	413, 425, 685, 1491, 1637
BtgI	CCRYGG	3 cut(s)	216, 272, 619
BtgZI	GCGATG	2 cut(s)	464, 1556
BtsCI	GGATG	2 cut(s)	1161, 1577
BtuMI	TCGCGA	2 cut(s)	449, 595
Cac8I	GCNNGC	2 cut(s)	28, 687
CfoI	GCGC	4 cut(s)	32, 349, 1044, 1315
Cfr13I	GGNCC	1 cut(s)	683
CseI	GACGC	3 cut(s)	56, 230, 232
Csp6I	GTAC	6 cut(s)	292, 406, 547, 776, 1352, 1477
CviAII	CATG	6 cut(s)	217, 620, 1034, 1304, 1453, 1582
CviQI	GTAC	6 cut(s)	292, 406, 547, 776, 1352, 1477
DdeI	CTNAG	9 cut(s)	80, 630, 983, 1114, 1251, 1347, 1406, 1646, 1660
DpnI	GATC	5 cut(s)	360, 876, 906, 1593, 1658
DpnII	GATC	5 cut(s)	358, 874, 904, 1591, 1656
EaeI	YGGCCR	3 cut(s)	411, 423, 1635
Eam1104I	CTCTTC	1 cut(s)	1433
EarI	CTCTTC	1 cut(s)	1433
Ecl136II	GAGCTC	1 cut(s)	1159
Eco130I	CCWWGG	3 cut(s)	216, 619, 1533
Eco24I	GRGCYC	4 cut(s)	78, 93, 395, 1161
Eco31I	GGTCTC	1 cut(s)	892
Eco32I	GATATC	3 cut(s)	102, 445, 1552
Eco53kI	GAGCTC	1 cut(s)	1159
Eco57I	CTGAAG	1 cut(s)	1457
Eco88I	CYCGRG	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	1159
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	3 cut(s)	102, 445, 1552
EcoT14I	CCWWGG	3 cut(s)	216, 619, 1533
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	4 cut(s)	78, 93, 395, 1161
ErhI	CCWWGG	3 cut(s)	216, 619, 1533
FaeI	CATG	6 cut(s)	220, 623, 1037, 1307, 1456, 1585
FaqI	GGGAC	3 cut(s)	6, 194, 715
FatI	CATG	6 cut(s)	216, 619, 1033, 1303, 1452, 1581
FauI	CCCGC	2 cut(s)	31, 73
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	5 cut(s)	33, 167, 657, 1530, 1539
FokI	GGATG	2 cut(s)	1148, 1564
FriOI	GRGCYC	4 cut(s)	78, 93, 395, 1161
Fsp4HI	GCNGC	5 cut(s)	33, 167, 657, 1530, 1539
FspBI	CTAG	5 cut(s)	932, 947, 1008, 1094, 1142
GlaI	GCGC	4 cut(s)	31, 348, 1043, 1314
GluI	GCNGC	5 cut(s)	33, 167, 657, 1530, 1539
GsuI	CTGGAG	1 cut(s)	283
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	5 cut(s)	413, 425, 685, 1491, 1637
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	3 cut(s)	56, 230, 232
HhaI	GCGC	4 cut(s)	32, 349, 1044, 1315
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	6 cut(s)	220, 623, 1037, 1307, 1456, 1585
Hin6I	GCGC	4 cut(s)	30, 347, 1042, 1313
HinP1I	GCGC	4 cut(s)	30, 347, 1042, 1313
HincII	GTYRAC	2 cut(s)	1000, 1393
HindII	GTYRAC	2 cut(s)	1000, 1393
HinfI	GANTC	6 cut(s)	114, 319, 527, 868, 950, 1432
HpaI	GTTAAC	2 cut(s)	1000, 1393
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	5 cut(s)	241, 353, 472, 483, 1094
Hpy166II	GTNNAC	4 cut(s)	247, 1000, 1393, 1627
Hpy188III	TCNNGA	9 cut(s)	97, 382, 448, 594, 669, 800, 844, 872, 947
Hpy8I	GTNNAC	4 cut(s)	247, 1000, 1393, 1627
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	5 cut(s)	226, 476, 921, 1176, 1244
HpyCH4III	ACNGT	7 cut(s)	40, 178, 418, 460, 538, 1021, 1287
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	7 cut(s)	4, 646, 659, 722, 790, 1307, 1569
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 274, 1039, 1535, 1538
HpyF3I	CTNAG	9 cut(s)	80, 630, 983, 1114, 1251, 1347, 1406, 1646, 1660
HpySE526I	ACGT	1 cut(s)	765
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	6 cut(s)	220, 623, 1037, 1307, 1456, 1585
HspAI	GCGC	4 cut(s)	30, 347, 1042, 1313
KpnI	GGTACC	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	904
KspAI	GTTAAC	2 cut(s)	1000, 1393
Kzo9I	GATC	5 cut(s)	358, 874, 904, 1591, 1656
LguI	GCTCTTC	1 cut(s)	1433
LmnI	GCTCC	8 cut(s)	81, 89, 141, 163, 253, 302, 398, 1156
Lsp1109I	GCAGC	3 cut(s)	643, 1516, 1550
LweI	GCATC	4 cut(s)	441, 643, 736, 1533
MaeI	CTAG	5 cut(s)	932, 947, 1008, 1094, 1142
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	5 cut(s)	532, 574, 1055, 1082, 1109
MalI	GATC	5 cut(s)	360, 876, 906, 1593, 1658
MboI	GATC	5 cut(s)	358, 874, 904, 1591, 1656
MboII	GAAGA	7 cut(s)	295, 755, 823, 869, 1097, 1441, 1450
MhlI	GDGCHC	4 cut(s)	78, 93, 395, 1161
MlsI	TGGCCA	2 cut(s)	413, 425
MluCI	AATT	6 cut(s)	259, 717, 837, 921, 1278, 1462
MluNI	TGGCCA	2 cut(s)	413, 425
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	2 cut(s)	34, 1269
Mox20I	TGGCCA	2 cut(s)	413, 425
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	2 cut(s)	413, 425
MseI	TTAA	9 cut(s)	693, 849, 999, 1137, 1281, 1368, 1392, 1596, 1672
MslI	CAYNNNNRTG	2 cut(s)	744, 1302
Msp20I	TGGCCA	2 cut(s)	413, 425
MspA1I	CMGCKG	2 cut(s)	169, 1226
MspCI	CTTAAG	1 cut(s)	1595
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	73, 371
Mva1269I	GAATGC	5 cut(s)	349, 443, 648, 722, 1615
MvaI	CCWGG	1 cut(s)	371
MvnI	CGCG	5 cut(s)	26, 224, 347, 449, 595
MwoI	GCNNNNNNNGC	5 cut(s)	32, 274, 1039, 1535, 1538
NciI	CCSGG	1 cut(s)	73
NcoI	CCATGG	2 cut(s)	216, 619
NdeII	GATC	5 cut(s)	358, 874, 904, 1591, 1656
NlaIII	CATG	6 cut(s)	220, 623, 1037, 1307, 1456, 1585
NlaIV	GGNNCC	7 cut(s)	77, 165, 180, 255, 394, 433, 548
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	3 cut(s)	532, 574, 1082
NruI	TCGCGA	2 cut(s)	449, 595
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1307
PciSI	GCTCTTC	1 cut(s)	1433
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	5 cut(s)	349, 443, 648, 722, 1615
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	5 cut(s)	319, 527, 868, 950, 1432
PkrI	GCNGC	5 cut(s)	34, 168, 658, 1531, 1540
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PshBI	ATTAAT	1 cut(s)	1368
Psp124BI	GAGCTC	1 cut(s)	1161
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	7 cut(s)	77, 165, 180, 255, 394, 433, 548
PspPI	GGNCC	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	1226
RruI	TCGCGA	2 cut(s)	449, 595
RsaI	GTAC	6 cut(s)	293, 407, 548, 777, 1353, 1478
RsaNI	GTAC	6 cut(s)	292, 406, 547, 776, 1352, 1477
RseI	CAYNNNNRTG	2 cut(s)	744, 1302
SacI	GAGCTC	1 cut(s)	1161
SapI	GCTCTTC	1 cut(s)	1433
SaqAI	TTAA	9 cut(s)	693, 849, 999, 1137, 1281, 1368, 1392, 1596, 1672
SatI	GCNGC	5 cut(s)	33, 167, 657, 1530, 1539
Sau3AI	GATC	5 cut(s)	358, 874, 904, 1591, 1656
Sau96I	GGNCC	1 cut(s)	683
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	73, 371
SduI	GDGCHC	4 cut(s)	78, 93, 395, 1161
SfaNI	GCATC	4 cut(s)	441, 643, 736, 1533
SfcI	CTRYAG	1 cut(s)	939
SmiMI	CAYNNNNRTG	2 cut(s)	744, 1302
SmlI	CTYRAG	3 cut(s)	380, 1124, 1595
SmoI	CTYRAG	3 cut(s)	380, 1124, 1595
Sse9I	AATT	6 cut(s)	259, 717, 837, 921, 1278, 1462
SsiI	CCGC	7 cut(s)	24, 33, 66, 167, 224, 582, 749
SspI	AATATT	1 cut(s)	1372
SspMI	CTAG	5 cut(s)	932, 947, 1008, 1094, 1142
SstI	GAGCTC	1 cut(s)	1161
StyD4I	CCNGG	2 cut(s)	71, 369
StyI	CCWWGG	3 cut(s)	216, 619, 1533
TaaI	ACNGT	7 cut(s)	40, 178, 418, 460, 538, 1021, 1287
TaiI	ACGT	1 cut(s)	768
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	6 cut(s)	259, 717, 837, 921, 1278, 1462
TatI	WGTACW	2 cut(s)	291, 405
TauI	GCSGC	2 cut(s)	35, 169
TfiI	GAWTC	5 cut(s)	319, 527, 868, 950, 1432
Tru1I	TTAA	9 cut(s)	693, 849, 999, 1137, 1281, 1368, 1392, 1596, 1672
Tru9I	TTAA	9 cut(s)	693, 849, 999, 1137, 1281, 1368, 1392, 1596, 1672
TseFI	GTSAC	3 cut(s)	532, 574, 1082
TseI	GCWGC	3 cut(s)	656, 1529, 1538
Tsp45I	GTSAC	3 cut(s)	532, 574, 1082
TspDTI	ATGAA	1 cut(s)	1341
TspGWI	ACGGA	4 cut(s)	261, 266, 520, 562
Vha464I	CTTAAG	1 cut(s)	1595
VspI	ATTAAT	1 cut(s)	1368
XapI	RAATTY	1 cut(s)	259
XbaI	TCTAGA	1 cut(s)	946
XceI	RCATGY	1 cut(s)	1307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	5 cut(s)	932, 947, 1008, 1094, 1142
ZrmI	AGTACT	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.