Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Forward (+)

39077298 .. 39087273

Gene Structure 9976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG324300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGGTGCAACAGTCGGTGGTGAAGGTGTTTTGCGTCCACACGGAGCCGAATTTCTCGTTGCTGTGGCAGAGGAAGAGGCAGTACAGCTCGAGTAGTAGTGGGTTTGTGATTGGGGGAAGAAGGGTCTTGACTAATGCGCACTCTGTGGAGCACCATACACAGGTCAAGCTCAAGAAGCGTGGCTCCGAGACCAAGTACTTGGCTACTGTGTTGGCCATTGGGACTGAATGTGATATTGCCATGCTCACAGTGAGTGATGATGAGTTCTGGGAAGGAGTTTCACCTGTGGAGTTTGGAGAGTTGCCGGCGCTCCAAGATGCTGTGACGGTTGTGGGCTACCCTATTGGGGGTGACACAATCTCTGTGACGAGTGGTGTAGTGTCACGTATGGAGATACTTTCATATGTTCATGGATCAACTGAGCTTCTGGGACTGCAGATAGATGCTGCCATAAACTCTGGAAACTCTGGTGGGCCCGCCTTCAATGACAATGGGACCTGTGTGGGCATTGCTTTTCAGTCTCTTAAACATGAAGATGCAGAAAATATAGGCTACGTTATTCCAACACCTGTTATCAAGCACTTCATTACAGATTACGAGAAGAATGGGGCATATACAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

208

Amino Acids

22.52

Weight (kDa)

5.3

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	22 - 197	1.2e-19	Trypsin
Trypsin_2	PF13365	34 - 171	5.5e-21	Trypsin-like peptidase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	141
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	52
AdeI	CACNNNGTG	1 cut(s)	148
AfaI	GTAC	2 cut(s)	86, 200
AfiI	CCNNNNNNNGG	3 cut(s)	163, 349, 350
AgsI	TTSAA	1 cut(s)	487
AluBI	AGCT	3 cut(s)	90, 172, 427
AluI	AGCT	3 cut(s)	90, 172, 427
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	185, 528
AlwI	GGATC	1 cut(s)	424
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	2 cut(s)	216, 476
ApaI	GGGCCC	1 cut(s)	480
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	2 cut(s)	142, 313
AspS9I	GGNCC	3 cut(s)	476, 477, 498
AsuHPI	GGTGA	3 cut(s)	34, 276, 365
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	480
BalI	TGGCCA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	480
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	185, 528
BfmI	CTRYAG	1 cut(s)	437
BfoI	RGCGCY	1 cut(s)	314
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
BmcAI	AGTACT	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	498
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	476, 477, 498
BmiI	GGNNCC	4 cut(s)	48, 187, 478, 499
BmsI	GCATC	3 cut(s)	310, 436, 529
BpuEI	CTTGAG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 349, 350
Bse118I	RCCGGY	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	163, 349, 350
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	1 cut(s)	436
BshFI	GGCC	2 cut(s)	218, 478
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	3 cut(s)	238, 447, 511
BslI	CCNNNNNNNGG	3 cut(s)	163, 349, 350
BsmAI	GTCTC	2 cut(s)	185, 528
BsmFI	GGGAC	3 cut(s)	238, 447, 511
BsnI	GGCC	2 cut(s)	218, 478
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	91
Bsp120I	GGGCCC	1 cut(s)	476
Bsp1286I	GDGCHC	2 cut(s)	156, 480
Bsp143I	GATC	1 cut(s)	416
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	218, 478
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	4 cut(s)	48, 187, 478, 499
BspMAI	CTGCAG	1 cut(s)	441
BspPI	GGATC	1 cut(s)	424
BspTNI	GGTCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	307
BssMI	GATC	1 cut(s)	416
Bst4CI	ACNGT	5 cut(s)	15, 211, 253, 331, 622
Bst6I	CTCTTC	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	309, 480
BstDEI	CTNAG	1 cut(s)	423
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	2 cut(s)	142, 313
BstKTI	GATC	1 cut(s)	419
BstMAI	GTCTC	2 cut(s)	185, 528
BstMBI	GATC	1 cut(s)	416
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	437
BstSLI	GKGCMC	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	436
BstXI	CCANNNNNNTGG	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	218, 478
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	309, 480
CfoI	GCGC	2 cut(s)	142, 313
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	476, 477, 498
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	85, 199
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	3 cut(s)	244, 413, 533
CviQI	GTAC	2 cut(s)	85, 199
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
DraIII	CACNNNGTG	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	480
FaeI	CATG	3 cut(s)	247, 416, 536
FaqI	GGGAC	3 cut(s)	238, 447, 511
FatI	CATG	3 cut(s)	243, 412, 532
FauI	CCCGC	1 cut(s)	487
FauNDI	CATATG	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	450
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	1 cut(s)	450
FspAI	RTGCGCAY	1 cut(s)	141
FspI	TGCGCA	1 cut(s)	141
GlaI	GCGC	2 cut(s)	141, 312
GluI	GCNGC	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	218, 478
HapII	CCGG	1 cut(s)	308
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	2 cut(s)	142, 313
Hin1II	CATG	3 cut(s)	247, 416, 536
Hin6I	GCGC	2 cut(s)	140, 311
HinP1I	GCGC	2 cut(s)	140, 311
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	3 cut(s)	34, 276, 365
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	3 cut(s)	130, 175, 462
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	4 cut(s)	19, 117, 269, 493
HpyCH4III	ACNGT	5 cut(s)	15, 211, 253, 331, 622
HpyCH4IV	ACGT	2 cut(s)	388, 558
HpyCH4V	TGCA	3 cut(s)	10, 439, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	2 cut(s)	388, 558
Hsp92II	CATG	3 cut(s)	247, 416, 536
HspAI	GCGC	2 cut(s)	140, 311
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	416
LmnI	GCTCC	4 cut(s)	46, 151, 191, 318
LpnPI	CCDG	9 cut(s)	149, 256, 300, 321, 416, 447, 456, 514, 585
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	3 cut(s)	310, 436, 529
MaeII	ACGT	2 cut(s)	388, 558
MaeIII	GTNAC	4 cut(s)	325, 353, 367, 384
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	4 cut(s)	88, 132, 548, 616
MhlI	GDGCHC	2 cut(s)	156, 480
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	1 cut(s)	52
MluNI	TGGCCA	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	590
MnlI	CCTC	2 cut(s)	66, 72
Mox20I	TGGCCA	1 cut(s)	218
MroNI	GCCGGC	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	537
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	178
NaeI	GCCGGC	1 cut(s)	309
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	1 cut(s)	416
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	3 cut(s)	247, 416, 536
NlaIV	GGNNCC	4 cut(s)	48, 187, 478, 499
NmuCI	GTSAC	4 cut(s)	325, 353, 367, 384
NsbI	TGCGCA	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	91
PdiI	GCCGGC	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	451
Ppu21I	YACGTR	1 cut(s)	389
PpuMI	RGGWCCY	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	498
PspN4I	GGNNCC	4 cut(s)	48, 187, 478, 499
PspOMI	GGGCCC	1 cut(s)	476
PspPI	GGNCC	3 cut(s)	476, 477, 498
PspPPI	RGGWCCY	1 cut(s)	498
PspXI	VCTCGAGB	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	441
RsaI	GTAC	2 cut(s)	86, 200
RsaNI	GTAC	2 cut(s)	85, 199
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	1 cut(s)	416
Sau96I	GGNCC	3 cut(s)	476, 477, 498
ScaI	AGTACT	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	156, 480
SfaNI	GCATC	3 cut(s)	310, 436, 529
SfcI	CTRYAG	1 cut(s)	437
Sfr274I	CTCGAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	2 cut(s)	91, 173
SmoI	CTYRAG	2 cut(s)	91, 173
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	480
TaaI	ACNGT	5 cut(s)	15, 211, 253, 331, 622
TaiI	ACGT	2 cut(s)	391, 561
TaqI	TCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	52
TatI	WGTACW	2 cut(s)	84, 198
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	4 cut(s)	325, 353, 367, 384
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	4 cut(s)	325, 353, 367, 384
TspDTI	ATGAA	4 cut(s)	393, 401, 549, 577
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	498
XapI	RAATTY	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	91
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.