Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Reverse (-)

1786422 .. 1786673

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCTTACGGTGAGCGATGATGAGTTCTGGGGGAATTTCACCCCTGGAGTTTGGAGAGTTACCGCACTCCCAGATGCTGTGACTGTTGCGGGCTACCCTATTGGGGGTGACACAATCTCTGTGACAGGTGGTGTTGTTTCACGTATGGAGATACTGTCTTATGATCATGGATCGACTGAGCTTCTAGGACTGCAGGTTTTCTTTTGGGTATTGTCTTCTACGACCATACGTAGTAACCGACTTACGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

84

Amino Acids

9.05

Weight (kDa)

4.69

Isoelectric Point (pI)

25.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AciI	CCGC	2 cut(s)	63, 89
AclWI	GGATC	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	103, 104
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
AlwI	GGATC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	22, 31, 119
BbsI	GAAGAC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	163
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	66
BsaAI	YACGTR	2 cut(s)	143, 230
BsaJI	CCNNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 104
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	103, 104
BseMII	CTCAG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	103, 104
Bsp143I	GATC	2 cut(s)	163, 170
BspACI	CCGC	2 cut(s)	63, 89
BspCNI	CTCAG	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	195
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	163, 170
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	10, 85, 156
BstBAI	YACGTR	2 cut(s)	143, 230
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	166, 173
BstMBI	GATC	2 cut(s)	163, 170
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	191
BstSNI	TACGTA	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	77
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	2 cut(s)	93, 181
CviKI_1	RGCY	2 cut(s)	93, 181
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	2 cut(s)	165, 172
DpnII	GATC	2 cut(s)	163, 170
Eco105I	TACGTA	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	43
FaeI	CATG	1 cut(s)	170
FaiI	YATR	4 cut(s)	146, 162, 168, 227
FatI	CATG	1 cut(s)	166
FauI	CCCGC	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	163
FspBI	CTAG	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	66
Hin1II	CATG	1 cut(s)	170
HphI	GGTGA	3 cut(s)	22, 31, 119
HpyCH4III	ACNGT	3 cut(s)	10, 85, 156
HpyCH4IV	ACGT	2 cut(s)	142, 229
HpyCH4V	TGCA	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	2 cut(s)	142, 229
Hsp92II	CATG	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	163, 170
LpnPI	CCDG	6 cut(s)	13, 30, 57, 84, 111, 179
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	2 cut(s)	142, 229
MaeIII	GTNAC	5 cut(s)	58, 79, 107, 121, 233
MalI	GATC	2 cut(s)	165, 172
MboI	GATC	2 cut(s)	163, 170
MboII	GAAGA	1 cut(s)	207
MluCI	AATT	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	163, 170
NlaIII	CATG	1 cut(s)	170
NmuCI	GTSAC	3 cut(s)	79, 107, 121
PcsI	WCGNNNNNNNCGW	1 cut(s)	235
Ppu21I	YACGTR	2 cut(s)	143, 230
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	77
Sau3AI	GATC	2 cut(s)	163, 170
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	5 cut(s)	130, 145, 183, 198, 232
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	191
SnaBI	TACGTA	1 cut(s)	230
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	2 cut(s)	63, 89
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	3 cut(s)	10, 85, 156
TaiI	ACGT	2 cut(s)	145, 232
TaqI	TCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	34
TseFI	GTSAC	3 cut(s)	79, 107, 121
Tsp45I	GTSAC	3 cut(s)	79, 107, 121
XapI	RAATTY	1 cut(s)	34
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.