Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Reverse (-)

15615288 .. 15619754

Gene Structure 4467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55660

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCGCACTCTGTGGAGCACCATACACAGGTCAAGCTCAAGAAGCGTGGCTCCGAGACCAAGTACTTGGCTACTGTGTTGGCCATTGGGACTGAATGTGATATTGCTTGACTTAAGATGGGATTCATATGTTCATGGATCAACTGAGCTTCTGGGACTGCAGATAGATGCTGCCATAAACTCTGGAAACTCTGGTGGGCCTGCCTTCAATGACAAGGGGACCTGTGTGGGCATTGCTTTTCAGTCTCTTAAACATGAAGATGCAGAAAATATAGGCTACGTTATTCCAACACCTGTTATCAAGCACTTCATTACAGATTACGAGAAGAATGGGGCATATACAGGGTTCCCAATTATTGGAATTGAGTGGCAAAAGATGGAAAATCCTGATCTACGCACGTCAATGGGGATGAAAGCTGATCAAAAGGGTGTGCGTATTAGAAGGATCGAACCTACAGCTCCAGATTCTCATCTTCTGCAACCATCTGATGTCATTCTTAGCTTTGATGGAGTTAATATTGCAAATGATGGCACAGTTCCATTCAGGCATGGGGAGCGCATAGGTTTCAGTTACCTCGTCTCCCAGAAATATACTGGCGATAGTGCTGTAGTAAAAGTTCTTCGTAACTCACAGATTCTTGAATTCAACATAAAACTTGGAACACACAAGCGTCTGATCCCGGCACACATCAACGGCAAACCTCCCTCCTATTATATCATCGGTGGATTTGTTTTTTCAGCTGTATCTGTTCCATATCTGCGTTCTGAGGTGTGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

259

Amino Acids

28.74

Weight (kDa)

8.93

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	54 - 104	5.5e-06	Trypsin
PDZ_2	PF13180	118 - 219	2e-06	PDZ domain
PDZ_3	PF17815	226 - 256	5.2e-06	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	356
AclWI	GGATC	3 cut(s)	145, 452, 670
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	641
AdeI	CACNNNGTG	1 cut(s)	12
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	27, 356
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	208, 641, 646
AjiI	CACGTC	1 cut(s)	399
AluBI	AGCT	6 cut(s)	36, 148, 416, 458, 501, 740
AluI	AGCT	6 cut(s)	36, 148, 416, 458, 501, 740
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	3 cut(s)	49, 249, 583
AlwI	GGATC	3 cut(s)	145, 452, 670
AoxI	GGCC	2 cut(s)	80, 197
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	641
AspLEI	GCGC	2 cut(s)	6, 558
AspS9I	GGNCC	2 cut(s)	197, 219
AsuC2I	CCSGG	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	219
BalI	TGGCCA	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	603, 635
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	5 cut(s)	111, 370, 490, 500, 521
BceAI	ACGGC	2 cut(s)	709, 759
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	3 cut(s)	49, 249, 583
BfmI	CTRYAG	3 cut(s)	158, 453, 606
BfrI	CTTAAG	1 cut(s)	112
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	219
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	2 cut(s)	197, 219
BmiI	GGNNCC	3 cut(s)	51, 220, 347
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	2 cut(s)	157, 250
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	680
BsaBI	GATNNNNATC	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 356
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	468
BseGI	GGATG	1 cut(s)	414
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	27, 356
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	135, 756
BseNI	ACTGG	1 cut(s)	598
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	2 cut(s)	82, 199
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	680
BslFI	GGGAC	3 cut(s)	102, 168, 232
BslI	CCNNNNNNNGG	2 cut(s)	27, 356
BsmAI	GTCTC	3 cut(s)	49, 249, 583
BsmBI	CGTCTC	1 cut(s)	583
BsmFI	GGGAC	3 cut(s)	102, 168, 232
BsnI	GGCC	2 cut(s)	82, 199
Bso31I	GGTCTC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	5 cut(s)	137, 388, 418, 444, 675
BspANI	GGCC	2 cut(s)	82, 199
BspCNI	CTCAG	2 cut(s)	136, 757
BspLI	GGNNCC	3 cut(s)	51, 220, 347
BspMAI	CTGCAG	1 cut(s)	162
BspPI	GGATC	3 cut(s)	145, 452, 670
BspTI	CTTAAG	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	598
BssMI	GATC	5 cut(s)	137, 388, 418, 444, 675
Bst4CI	ACNGT	2 cut(s)	75, 535
BstAFI	CTTAAG	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	3 cut(s)	144, 497, 765
BstF5I	GGATG	1 cut(s)	414
BstHHI	GCGC	2 cut(s)	6, 558
BstKTI	GATC	5 cut(s)	140, 391, 421, 447, 678
BstMAI	GTCTC	3 cut(s)	49, 249, 583
BstMBI	GATC	5 cut(s)	137, 388, 418, 444, 675
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 553
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	3 cut(s)	158, 453, 606
BstV1I	GCAGC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	82, 199
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	2 cut(s)	6, 558
Cfr13I	GGNCC	2 cut(s)	197, 219
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	63
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	3 cut(s)	134, 254, 548
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	3 cut(s)	144, 497, 765
DpnI	GATC	5 cut(s)	139, 390, 420, 446, 677
DpnII	GATC	5 cut(s)	137, 388, 418, 444, 675
DraIII	CACNNNGTG	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	641
Esp3I	CGTCTC	1 cut(s)	583
FaeI	CATG	3 cut(s)	137, 257, 551
FaqI	GGGAC	3 cut(s)	102, 168, 232
FatI	CATG	3 cut(s)	133, 253, 547
FauNDI	CATATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	171
FspAI	RTGCGCAY	1 cut(s)	5
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 557
GluI	GCNGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	82, 199
HapII	CCGG	1 cut(s)	680
HgaI	GACGC	1 cut(s)	659
HhaI	GCGC	2 cut(s)	6, 558
Hin1II	CATG	3 cut(s)	137, 257, 551
Hin6I	GCGC	2 cut(s)	4, 556
HinP1I	GCGC	2 cut(s)	4, 556
HinfI	GANTC	3 cut(s)	122, 464, 634
HpaII	CCGG	1 cut(s)	680
Hpy188I	TCNGA	4 cut(s)	54, 487, 675, 766
Hpy188III	TCNNGA	5 cut(s)	39, 183, 386, 461, 638
HpyAV	CCTTC	2 cut(s)	214, 435
HpyCH4III	ACNGT	2 cut(s)	75, 535
HpyCH4IV	ACGT	2 cut(s)	279, 398
HpyCH4V	TGCA	4 cut(s)	160, 263, 478, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 553
HpyF3I	CTNAG	3 cut(s)	144, 497, 765
HpySE526I	ACGT	2 cut(s)	279, 398
Hsp92II	CATG	3 cut(s)	137, 257, 551
HspAI	GCGC	2 cut(s)	4, 556
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	137, 388, 418, 444, 675
LmnI	GCTCC	4 cut(s)	15, 55, 463, 553
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	2 cut(s)	157, 250
MaeII	ACGT	2 cut(s)	279, 398
MaeIII	GTNAC	2 cut(s)	569, 623
MalI	GATC	5 cut(s)	139, 390, 420, 446, 677
MboI	GATC	5 cut(s)	137, 388, 418, 444, 675
MboII	GAAGA	4 cut(s)	269, 337, 464, 611
MhlI	GDGCHC	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	82
MluCI	AATT	3 cut(s)	351, 360, 641
MluNI	TGGCCA	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	4 cut(s)	584, 711, 715, 760
Mox20I	TGGCCA	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	82
MseI	TTAA	3 cut(s)	113, 249, 513
MslI	CAYNNNNRTG	2 cut(s)	258, 401
Msp20I	TGGCCA	1 cut(s)	82
MspA1I	CMGCKG	1 cut(s)	740
MspCI	CTTAAG	1 cut(s)	112
MspI	CCGG	1 cut(s)	680
MspR9I	CCNGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	2 cut(s)	42, 553
NciI	CCSGG	1 cut(s)	680
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	5 cut(s)	137, 388, 418, 444, 675
NlaIII	CATG	3 cut(s)	137, 257, 551
NlaIV	GGNNCC	3 cut(s)	51, 220, 347
NsbI	TGCGCA	1 cut(s)	5
PfeI	GAWTC	3 cut(s)	122, 464, 634
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	51, 220, 347
PspPI	GGNCC	2 cut(s)	197, 219
PspPPI	RGGWCCY	1 cut(s)	219
PsrI	GAACNNNNNNTAC	2 cut(s)	600, 632
PstI	CTGCAG	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	2 cut(s)	258, 401
SaqAI	TTAA	3 cut(s)	113, 249, 513
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	5 cut(s)	137, 388, 418, 444, 675
Sau96I	GGNCC	2 cut(s)	197, 219
ScaI	AGTACT	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	2 cut(s)	157, 250
SfcI	CTRYAG	3 cut(s)	158, 453, 606
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	2 cut(s)	258, 401
SmlI	CTYRAG	2 cut(s)	37, 112
SmoI	CTYRAG	2 cut(s)	37, 112
Sse9I	AATT	3 cut(s)	351, 360, 641
SspI	AATATT	1 cut(s)	517
StyD4I	CCNGG	1 cut(s)	678
TaaI	ACNGT	2 cut(s)	75, 535
TaiI	ACGT	2 cut(s)	282, 401
TaqI	TCGA	1 cut(s)	447
TasI	AATT	3 cut(s)	351, 360, 641
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	122, 464, 634
Tru1I	TTAA	3 cut(s)	113, 249, 513
Tru9I	TTAA	3 cut(s)	113, 249, 513
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	5 cut(s)	114, 122, 270, 298, 425
Van91I	CCANNNNNTGG	1 cut(s)	356
Vha464I	CTTAAG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.