Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042111.1

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 858

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042111.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

aaaacccccacccccgaaaccctagccaccaccaccgcatccccaccaccaccaacaacaaccacatccgccgcagacgacgatgacgacgccgttttctcagtcagcaacgtcgagattatcgagcccaaatccccccgccgcggccgcggccgccccaagaagctcccgaagctctccgaaaacggcgaccacgacccgcccgccccggccgattcggatcccggaacggcctgggagggcggggcgagggtggtcccgtcgatggacgcggtggtgaaggtgttctgcacgcacaccgagccgaatttctcgctgccgtggcagcgaaagaggcagtacagctcgagcagcagtgggtttgtgattggcggcaggagggtgctcaccaatgctcactcagtggagcattacacccaggtcaagctcaagaagcgcggctccgataccaagtacttggccactgttctcgctattggcaccgagtgtgacattgcgatgcttacggttgatgatgatgagttttgggaaggtgtgtcaccggtggagtttggggagttgcctgcgctgcaagatgctgttactgtcgtgggttatccgattgggggagacacgatttcagtgacgagtggcgttgtatcgcggatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

216

Amino Acids

23.08

Weight (kDa)

5.12

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	479
AccII	CGCG	5 cut(s)	144, 150, 272, 438, 643
AclWI	GGATC	2 cut(s)	215, 228
AcoI	YGGCCR	4 cut(s)	145, 151, 210, 459
AcsI	RAATTY	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	90
AdeI	CACNNNGTG	2 cut(s)	403, 486
AfaI	GTAC	2 cut(s)	341, 455
AfiI	CCNNNNNNNGG	3 cut(s)	143, 265, 605
AgeI	ACCGGT	1 cut(s)	541
AjnI	CCWGG	2 cut(s)	233, 417
AluBI	AGCT	4 cut(s)	166, 175, 345, 427
AluI	AGCT	4 cut(s)	166, 175, 345, 427
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	603
AlwI	GGATC	2 cut(s)	215, 228
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	5 cut(s)	145, 151, 210, 231, 459
ApeKI	GCWGC	4 cut(s)	316, 325, 351, 568
ApoI	RAATTY	1 cut(s)	307
AsiGI	ACCGGT	1 cut(s)	541
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	438, 568
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	2 cut(s)	209, 225
AsuHPI	GGTGA	3 cut(s)	289, 379, 531
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	4 cut(s)	303, 337, 363, 555
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	4 cut(s)	77, 202, 246, 304
BciT130I	CCWGG	2 cut(s)	235, 419
BcnI	CCSGG	2 cut(s)	209, 225
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	23
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	4 cut(s)	209, 225, 235, 419
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	4 cut(s)	222, 258, 442, 481
BmrFI	CCNGG	4 cut(s)	209, 225, 235, 419
BmsI	GCATC	3 cut(s)	47, 489, 565
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	209, 225
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	6 cut(s)	142, 148, 207, 234, 320, 417
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 265, 605
Bse118I	RCCGGY	1 cut(s)	541
Bse3DI	GCAATG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	235, 419
BseDI	CCNNGG	6 cut(s)	142, 148, 207, 234, 320, 417
BseGI	GGATG	2 cut(s)	38, 65
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	3 cut(s)	143, 265, 605
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	2 cut(s)	114, 414
BseX3I	CGGCCG	3 cut(s)	145, 151, 210
BseXI	GCAGC	4 cut(s)	303, 337, 363, 555
BsgI	GTGCAG	1 cut(s)	274
Bsh1236I	CGCG	5 cut(s)	144, 150, 272, 438, 643
Bsh1285I	CGRYCG	3 cut(s)	148, 154, 213
BshFI	GGCC	5 cut(s)	147, 153, 212, 233, 461
BshNI	GGYRCC	1 cut(s)	479
BshTI	ACCGGT	1 cut(s)	541
BsiEI	CGRYCG	3 cut(s)	148, 154, 213
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	3 cut(s)	209, 225, 542
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	143, 265, 605
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	5 cut(s)	147, 153, 212, 233, 461
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	129, 387
Bsp143I	GATC	1 cut(s)	220
BspANI	GGCC	5 cut(s)	147, 153, 212, 233, 461
BspCNI	CTCAG	2 cut(s)	113, 413
BspFNI	CGCG	5 cut(s)	144, 150, 272, 438, 643
BspLI	GGNNCC	4 cut(s)	222, 258, 442, 481
BspPI	GGATC	2 cut(s)	215, 228
BspT107I	GGYRCC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	541
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	6 cut(s)	142, 148, 207, 234, 320, 417
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	235, 419
Bst4CI	ACNGT	3 cut(s)	466, 508, 586
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	204, 293, 564
BstDEI	CTNAG	2 cut(s)	100, 400
BstDSI	CCRYGG	3 cut(s)	142, 148, 320
BstF5I	GGATG	2 cut(s)	38, 65
BstFNI	CGCG	5 cut(s)	144, 150, 272, 438, 643
BstHHI	GCGC	2 cut(s)	438, 568
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	1 cut(s)	220
BstMCI	CGRYCG	3 cut(s)	148, 154, 213
BstNI	CCWGG	2 cut(s)	235, 419
BstSCI	CCNGG	4 cut(s)	207, 223, 233, 417
BstUI	CGCG	5 cut(s)	144, 150, 272, 438, 643
BstV1I	GCAGC	4 cut(s)	303, 337, 363, 555
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	220
BstZI	CGGCCG	3 cut(s)	145, 151, 210
BsuRI	GGCC	5 cut(s)	147, 153, 212, 233, 461
BtgI	CCRYGG	3 cut(s)	142, 148, 320
BtgZI	GCGATG	1 cut(s)	512
BtsCI	GGATG	2 cut(s)	38, 65
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	4 cut(s)	361, 408, 462, 627
Cac8I	GCNNGC	3 cut(s)	204, 293, 564
CciNI	GCGGCCGC	2 cut(s)	145, 151
CfoI	GCGC	2 cut(s)	438, 568
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	256
Cfr42I	CCGCGG	2 cut(s)	145, 151
CseI	GACGC	2 cut(s)	98, 278
Csp6I	GTAC	2 cut(s)	340, 454
CspAI	ACCGGT	1 cut(s)	541
CviQI	GTAC	2 cut(s)	340, 454
DdeI	CTNAG	2 cut(s)	100, 400
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
DraIII	CACNNNGTG	2 cut(s)	403, 486
EaeI	YGGCCR	4 cut(s)	145, 151, 210, 459
EagI	CGGCCG	3 cut(s)	145, 151, 210
EciI	GGCGGA	1 cut(s)	58
EclXI	CGGCCG	3 cut(s)	145, 151, 210
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	256
Eco52I	CGGCCG	3 cut(s)	145, 151, 210
Eco88I	CYCGRG	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	233, 417
EcoT38I	GRGCYC	1 cut(s)	129
FaqI	GGGAC	1 cut(s)	242
FauI	CCCGC	4 cut(s)	146, 207, 211, 236
FokI	GGATG	2 cut(s)	25, 52
FriOI	GRGCYC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	2 cut(s)	437, 567
HaeIII	GGCC	5 cut(s)	147, 153, 212, 233, 461
HapII	CCGG	3 cut(s)	209, 225, 542
HgaI	GACGC	2 cut(s)	98, 278
HhaI	GCGC	2 cut(s)	438, 568
Hin1I	GRCGYC	1 cut(s)	90
Hin6I	GCGC	2 cut(s)	436, 566
HinP1I	GCGC	2 cut(s)	436, 566
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	3 cut(s)	209, 225, 542
HphI	GGTGA	3 cut(s)	289, 379, 531
Hpy188I	TCNGA	4 cut(s)	181, 220, 445, 600
Hpy188III	TCNNGA	3 cut(s)	115, 169, 430
Hpy99I	CGWCG	4 cut(s)	83, 92, 116, 265
HpyAV	CCTTC	2 cut(s)	274, 524
HpyCH4III	ACNGT	3 cut(s)	466, 508, 586
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	291, 571
HpyF3I	CTNAG	2 cut(s)	100, 400
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	90
HspAI	GCGC	2 cut(s)	436, 566
KspI	CCGCGG	2 cut(s)	145, 151
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	3 cut(s)	171, 406, 446
LpnPI	CCDG	9 cut(s)	220, 222, 238, 247, 361, 404, 431, 555, 576
Lsp1109I	GCAGC	4 cut(s)	303, 337, 363, 555
LweI	GCATC	3 cut(s)	47, 489, 565
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	4 cut(s)	488, 537, 580, 622
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	2 cut(s)	129, 387
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	1 cut(s)	307
MluNI	TGGCCA	1 cut(s)	461
MnlI	CCTC	4 cut(s)	232, 243, 327, 372
Mox20I	TGGCCA	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	461
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	461
MspA1I	CMGCKG	2 cut(s)	144, 150
MspI	CCGG	3 cut(s)	209, 225, 542
MspR9I	CCNGG	4 cut(s)	209, 225, 235, 419
MvaI	CCWGG	2 cut(s)	235, 419
MvnI	CGCG	5 cut(s)	144, 150, 272, 438, 643
NciI	CCSGG	2 cut(s)	209, 225
NdeII	GATC	1 cut(s)	220
NlaIV	GGNNCC	4 cut(s)	222, 258, 442, 481
NmuCI	GTSAC	3 cut(s)	488, 537, 622
NotI	GCGGCCGC	2 cut(s)	145, 151
PaeR7I	CTCGAG	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 120, 192
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	223
PinAI	ACCGGT	1 cut(s)	541
Psp6I	CCWGG	2 cut(s)	233, 417
PspGI	CCWGG	2 cut(s)	233, 417
PspN4I	GGNNCC	4 cut(s)	222, 258, 442, 481
PspPI	GGNCC	1 cut(s)	256
PspXI	VCTCGAGB	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	341, 455
RsaNI	GTAC	2 cut(s)	340, 454
RseI	CAYNNNNRTG	1 cut(s)	497
SacII	CCGCGG	2 cut(s)	145, 151
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	256
ScaI	AGTACT	1 cut(s)	455
ScrFI	CCNGG	4 cut(s)	209, 225, 235, 419
SduI	GDGCHC	2 cut(s)	129, 387
SetI	ASST	8 cut(s)	114, 168, 177, 285, 347, 423, 429, 535
SfaNI	GCATC	3 cut(s)	47, 489, 565
Sfr274I	CTCGAG	1 cut(s)	346
Sfr303I	CCGCGG	2 cut(s)	145, 151
SgrAI	CRCCGGYG	1 cut(s)	541
SgrBI	CCGCGG	2 cut(s)	145, 151
SinI	GGWCC	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	346, 428
SmoI	CTYRAG	2 cut(s)	346, 428
Sse9I	AATT	1 cut(s)	307
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	4 cut(s)	207, 223, 233, 417
TaaI	ACNGT	3 cut(s)	466, 508, 586
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	4 cut(s)	114, 123, 263, 347
TasI	AATT	1 cut(s)	307
TatI	WGTACW	2 cut(s)	339, 453
TauI	GCSGC	8 cut(s)	74, 144, 147, 150, 153, 156, 375, 441
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	4 cut(s)	361, 408, 469, 627
TseFI	GTSAC	3 cut(s)	488, 537, 622
TseI	GCWGC	4 cut(s)	316, 325, 351, 568
Tsp45I	GTSAC	3 cut(s)	488, 537, 622
TspRI	CASTG	4 cut(s)	361, 408, 469, 627
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.