Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023958.1

Orthogroup ID

OG0001244

Physical Location & Seq

Genomic Coordinates Reverse (-)

24 .. 510

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023958.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgctcacagtgagtgatgatgagttctgggaaggagtttcacctgtggagtttggagagttgccggtgctccaagatgctgtgacggttgtgggctaccctattgggggtgaaacaatctctgtgacgagtggtgtagtgtcacgtatggagatactttcatatgttcatggatcaactgagcttctgggactgcagatagatgctgccataaactctggaaactctggtgggcctgccttcaatgacaaggggacctgtgtgggcattgcttttcagtctcttaaacataaagatgcagaaaatataggctacgttattccaatacctgttatcaagcacttcattacagattacgagaagaatggggcatatacaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

127

Amino Acids

13.46

Weight (kDa)

4.4

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40200
fragaria_vesca	FvH4_5g04990 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350 FvH4_6g50350
malus_domestica	MD06G1178100.v1.1 MD06G1178200.v1.1 MD09G1037000.v1.1 MD09G1037100.v1.1 MD14G1184600.v1.1 MD17G1038400.v1.1 MD17G1038500.v1.1
prunus_persica	Prupe.3G280500_v2.0.a1 Prupe.3G280600_v2.0.a1 Prupe.5G177300_v2.0.a1 Prupe.5G177300_v2.0.a1
pyrus_communis	pycom06g15840 pycom111g02980 pycom14g15360 pycom17g03470
rosa_chinensis	RchiOBHm_Chr1g0327041 RchiOBHm_Chr2g0170661 RchiOBHm_Chr2g0170671 RchiOBHm_Chr7g0194051
rosa_laevigata	RLG00000004221 RLG00000021973 RLG00000021974
rosa_multiflora	Rmu_sc0003787.1_g000010 Rmu_sc0003787.1_g000011 Rmu_sc0009433.1_g000001 Rmu_sc0023958.1_g000001 Rmu_sc0042111.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081130 Rroxscaffold_2G00081140 Rroxscaffold_3G00261590
rosa_rugosa	Rorug02G0550300 Rorug07G0013500
rosa_samantha	Rh2AG623200 Rh2AG623300 Rh2BG633700 Rh2CG602900 Rh2CG603000 Rh2DG646500 Rh7AG140600 Rh7BG141300 Rh7CG144700 Rh7DG142000 Rh7DG324300
rosa_wichuraiana	Rw2G028950 Rw2G051610 Rw2G051620 Rw7G012010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	106, 107
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	233, 255
AsuHPI	GGTGA	2 cut(s)	33, 122
AvaII	GGWCC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	194
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	233, 255
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	3 cut(s)	67, 193, 286
BsaAI	YACGTR	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 107
Bse118I	RCCGGY	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	106, 107
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	2 cut(s)	204, 268
BslI	CCNNNNNNNGG	2 cut(s)	106, 107
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	2 cut(s)	204, 268
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	198
BspPI	GGATC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssMI	GATC	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	10, 88
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	233, 255
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	4 cut(s)	96, 184, 235, 312
CviKI_1	RGCY	4 cut(s)	96, 184, 235, 312
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	255
FaeI	CATG	1 cut(s)	173
FaiI	YATR	9 cut(s)	149, 163, 165, 171, 212, 291, 308, 373, 375
FaqI	GGGAC	2 cut(s)	204, 268
FatI	CATG	1 cut(s)	169
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	1 cut(s)	173
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	2 cut(s)	33, 122
Hpy188III	TCNNGA	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	26, 250
HpyCH4III	ACNGT	2 cut(s)	10, 88
HpyCH4IV	ACGT	2 cut(s)	145, 315
HpyCH4V	TGCA	2 cut(s)	196, 299
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	2 cut(s)	145, 315
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	3 cut(s)	67, 193, 286
MaeII	ACGT	2 cut(s)	145, 315
MaeIII	GTNAC	3 cut(s)	82, 124, 141
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	72
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	3 cut(s)	82, 124, 141
PkrI	GCNGC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	233, 255
PspPPI	RGGWCCY	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	2 cut(s)	233, 255
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	7 cut(s)	46, 148, 186, 260, 318, 331, 382
SfaNI	GCATC	3 cut(s)	67, 193, 286
SfcI	CTRYAG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	10, 88
TaiI	ACGT	2 cut(s)	148, 318
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	3 cut(s)	82, 124, 141
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	3 cut(s)	82, 124, 141
TspDTI	ATGAA	3 cut(s)	150, 158, 334
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.