Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Reverse (-)

30453164 .. 30458615

Gene Structure 5452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1208800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTGCCGAAAGAAGCTAAGAGATCGTAGCACAGAACTTGGCATTTCCAATTTGTCCCCTGATGTTGCCCTTGCTCTTACCCCGGATGAGTACCGGGTTCGAGAGATCATGCAGCTTTACTTTGAGAAGATTACAGAGCTTATTCGCAGGTCTAGTTCCACCCTCTTCAAAGAAGCATTAGTGAGCTTTGTTACACGGAATTTGAATACTTTCCCTCTTCTATTTGCTTTGATGCGTCTTCTTCTTCAAAATCCTCTCATACATATTGAACCTTATCTACAACAATTGATGCCATCTGTTATTACCTGCCCTGTTGCAAAAAGATTAGGGAATAGATATACTGACGATTACTGGGAACTTAGAAACTTTACAGCAAACCTGGTTTCTTCAATTTGCAAAAGATTTGGGCATGCTTATCACAATCTTCAACCACGTTTTGACAAGGACTCTGCTTCATGCTTTCTTGGATCCAACAAAAGCATTACCTCAGCATTATGGTGCAATTCAAGGCTAGCAGCTCTTGGTCCCAGTGTGATCCTTCTCGACGTTGAACAGGTTCGTCTACTCATACTTCCAAATCTCGATTCATCTATGCAACTTCTTGACCCAGAAATGATACTTGAGAAGCAAAAAAATGAGATAAAGAGGCAAGAAGCTTGGCGTGTCTATGGGGCTTTGCTGAAAGCGGCTGGCCAATGTATGCATGATCGGCTCAAGGTGTTCCATATTCTGTTGTCTCCTCCAGCTCATGCCGTTTGGAAAAGCAACGGAAAGGTTACAACAATAATGACAAGTATGCCTTCCTTAACCCTTTTACTTGCTATGCTATATTCCCTGAACATCAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

284

Amino Acids

32.31

Weight (kDa)

9.4

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF6_C	PF07571	64 - 179	8.6e-26	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	138, 314
AccI	GTMKAC	1 cut(s)	562
AciI	CCGC	1 cut(s)	686
AclWI	GGATC	3 cut(s)	462, 475, 529
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	8 cut(s)	169, 205, 248, 269, 390, 428, 507, 551
AjnI	CCWGG	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	2 cut(s)	568, 600
AluBI	AGCT	7 cut(s)	16, 115, 139, 186, 518, 656, 746
AluI	AGCT	7 cut(s)	16, 115, 139, 186, 518, 656, 746
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	3 cut(s)	462, 475, 529
AoxI	GGCC	1 cut(s)	691
ApeKI	GCWGC	2 cut(s)	112, 515
ApoI	RAATTY	1 cut(s)	199
Asp700I	GAANNNNTTC	2 cut(s)	209, 555
AspS9I	GGNCC	1 cut(s)	524
AsuC2I	CCSGG	2 cut(s)	83, 95
AsuNHI	GCTAGC	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	524
BalI	TGGCCA	1 cut(s)	693
BamHI	GGATCC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	124, 527
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	2 cut(s)	83, 95
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	2 cut(s)	153, 512
BfuAI	ACCTGC	2 cut(s)	138, 314
BisI	GCNGC	3 cut(s)	113, 516, 687
BlsI	GCNGC	3 cut(s)	114, 517, 688
Bme1390I	CCNGG	3 cut(s)	83, 95, 380
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	2 cut(s)	469, 526
BmrFI	CCNGG	3 cut(s)	83, 95, 380
BmrI	ACTGGG	2 cut(s)	361, 522
BmsI	GCATC	2 cut(s)	222, 279
BmtI	GCTAGC	1 cut(s)	515
BmuI	ACTGGG	2 cut(s)	361, 522
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	487
BpuEI	CTTGAG	2 cut(s)	641, 698
BpuMI	CCSGG	2 cut(s)	83, 95
BsaJI	CCNNGG	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	356, 528
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	356, 528
BseRI	GAGGAG	1 cut(s)	729
BseXI	GCAGC	2 cut(s)	124, 527
BshFI	GGCC	1 cut(s)	693
BsiSI	CCGG	2 cut(s)	83, 94
BslFI	GGGAC	2 cut(s)	40, 510
BsmAI	GTCTC	1 cut(s)	741
BsmFI	GGGAC	2 cut(s)	40, 510
BsnI	GGCC	1 cut(s)	693
Bsp143I	GATC	5 cut(s)	22, 105, 467, 534, 706
BspACI	CCGC	1 cut(s)	686
BspANI	GGCC	1 cut(s)	693
BspCNI	CTCAG	1 cut(s)	500
BspLI	GGNNCC	2 cut(s)	469, 526
BspMI	ACCTGC	2 cut(s)	138, 314
BspOI	GCTAGC	1 cut(s)	515
BspPI	GGATC	3 cut(s)	462, 475, 529
BsrI	ACTGG	2 cut(s)	356, 528
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	5 cut(s)	22, 105, 467, 534, 706
Bst2UI	CCWGG	1 cut(s)	380
Bst6I	CTCTTC	2 cut(s)	170, 222
BstC8I	GCNNGC	3 cut(s)	411, 513, 691
BstDEI	CTNAG	3 cut(s)	17, 359, 487
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	5 cut(s)	25, 108, 470, 537, 709
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	5 cut(s)	22, 105, 467, 534, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	709
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	3 cut(s)	81, 93, 378
BstV1I	GCAGC	2 cut(s)	124, 527
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	693
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	535, 850
BveI	ACCTGC	2 cut(s)	138, 314
Cac8I	GCNNGC	3 cut(s)	411, 513, 691
Cfr13I	GGNCC	1 cut(s)	524
CseI	GACGC	1 cut(s)	224
CsiI	ACCWGGT	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	5 cut(s)	109, 410, 456, 704, 749
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	17, 359, 487
DpnI	GATC	5 cut(s)	24, 107, 469, 536, 708
DpnII	GATC	5 cut(s)	22, 105, 467, 534, 706
EaeI	YGGCCR	1 cut(s)	691
Eam1104I	CTCTTC	2 cut(s)	170, 222
EarI	CTCTTC	2 cut(s)	170, 222
Eco47I	GGWCC	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	378
EcoT22I	ATGCAT	1 cut(s)	705
FaeI	CATG	5 cut(s)	112, 413, 459, 707, 752
FalI	AAGNNNNNCTT	2 cut(s)	784, 816
FaqI	GGGAC	2 cut(s)	40, 510
FatI	CATG	5 cut(s)	108, 409, 455, 703, 748
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	3 cut(s)	113, 516, 687
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	113, 516, 687
FspBI	CTAG	2 cut(s)	153, 512
GluI	GCNGC	3 cut(s)	113, 516, 687
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	693
HapII	CCGG	2 cut(s)	83, 94
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	5 cut(s)	112, 413, 459, 707, 752
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	2 cut(s)	446, 584
HpaII	CCGG	2 cut(s)	83, 94
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188III	TCNNGA	4 cut(s)	101, 542, 581, 602
Hpy8I	GTNNAC	1 cut(s)	563
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	2 cut(s)	548, 810
HpyCH4IV	ACGT	2 cut(s)	433, 546
HpyCH4V	TGCA	6 cut(s)	112, 317, 396, 501, 595, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	709
HpyF3I	CTNAG	3 cut(s)	17, 359, 487
HpySE526I	ACGT	2 cut(s)	433, 546
Hsp92II	CATG	5 cut(s)	112, 413, 459, 707, 752
Kzo9I	GATC	5 cut(s)	22, 105, 467, 534, 706
Lsp1109I	GCAGC	2 cut(s)	124, 527
LweI	GCATC	2 cut(s)	222, 279
MabI	ACCWGGT	1 cut(s)	378
MaeI	CTAG	2 cut(s)	153, 512
MaeII	ACGT	2 cut(s)	433, 546
MaeIII	GTNAC	2 cut(s)	190, 775
MalI	GATC	5 cut(s)	24, 107, 469, 536, 708
MboI	GATC	5 cut(s)	22, 105, 467, 534, 706
MboII	GAAGA	8 cut(s)	139, 157, 209, 230, 233, 236, 378, 416
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	467
MlsI	TGGCCA	1 cut(s)	693
MluCI	AATT	5 cut(s)	49, 199, 284, 390, 502
MluNI	TGGCCA	1 cut(s)	693
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	6 cut(s)	173, 225, 264, 496, 639, 750
Mox20I	TGGCCA	1 cut(s)	693
Mph1103I	ATGCAT	1 cut(s)	705
MroXI	GAANNNNTTC	2 cut(s)	209, 555
MscI	TGGCCA	1 cut(s)	693
MseI	TTAA	2 cut(s)	806, 850
MslI	CAYNNNNRTG	1 cut(s)	496
Msp20I	TGGCCA	1 cut(s)	693
MspI	CCGG	2 cut(s)	83, 94
MspR9I	CCNGG	3 cut(s)	83, 95, 380
MunI	CAATTG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	709
NciI	CCSGG	2 cut(s)	83, 95
NdeII	GATC	5 cut(s)	22, 105, 467, 534, 706
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	5 cut(s)	112, 413, 459, 707, 752
NlaIV	GGNNCC	2 cut(s)	469, 526
NsiI	ATGCAT	1 cut(s)	705
NspI	RCATGY	1 cut(s)	413
PaeI	GCATGC	1 cut(s)	413
PdmI	GAANNNNTTC	2 cut(s)	209, 555
PfeI	GAWTC	1 cut(s)	584
PkrI	GCNGC	3 cut(s)	114, 517, 688
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	469, 526
PspPI	GGNCC	1 cut(s)	524
PsrI	GAACNNNNNNTAC	2 cut(s)	261, 293
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	496
SaqAI	TTAA	2 cut(s)	806, 850
SatI	GCNGC	3 cut(s)	113, 516, 687
Sau3AI	GATC	5 cut(s)	22, 105, 467, 534, 706
Sau96I	GGNCC	1 cut(s)	524
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	3 cut(s)	83, 95, 380
SexAI	ACCWGGT	1 cut(s)	378
SfaNI	GCATC	2 cut(s)	222, 279
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	496
SmlI	CTYRAG	2 cut(s)	620, 713
SmoI	CTYRAG	2 cut(s)	620, 713
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	5 cut(s)	49, 199, 284, 390, 502
SsiI	CCGC	1 cut(s)	686
SspMI	CTAG	2 cut(s)	153, 512
StyD4I	CCNGG	3 cut(s)	81, 93, 378
TaiI	ACGT	2 cut(s)	436, 549
TaqI	TCGA	3 cut(s)	100, 543, 582
TasI	AATT	5 cut(s)	49, 199, 284, 390, 502
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	2 cut(s)	806, 850
Tru9I	TTAA	2 cut(s)	806, 850
TscAI	CASTG	2 cut(s)	535, 850
TseI	GCWGC	2 cut(s)	112, 515
TspDTI	ATGAA	2 cut(s)	444, 576
TspGWI	ACGGA	2 cut(s)	211, 783
TspRI	CASTG	2 cut(s)	535, 850
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	562
XmnI	GAANNNNTTC	2 cut(s)	209, 555
XspI	CTAG	2 cut(s)	153, 512
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.