Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00043

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Reverse (-)

116250 .. 121812

Gene Structure 5563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G001450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGCAACGTGCCTAAAGAAGCAATTGAGGTCGTAGCGCAGAGCATTGGCATTACCAATTTGTCTCCTGATGTTGCACTTGCTCTCACCCCAGATGTCGAGTACCGGGTTCGCGAGATCATGCAGCTTTACTTTGAGAAGATCATAGGGCTCAATCAAAAGTCTAGCTCAACCCTTTTTGAAGAAGCATTAGTGAGCTTGGCAACAGATTCAGGGCTCCATCCGTTGGTTCCTTACTTTACGTGCTTGTTGCTGATGAGTGTTTTCCTGCGATCATCTCGGGTTACACGCAATTTGAATAATTTTCTCCTCCTAGTTGCTTTAATGCGTCTTGTCCGGAGCCTTCTTCAAAATCCTCACATACATGTTGAACCTTATCTACACCAATTGATGCCTTCTGTTATTACCTGCCTTGTTGCAAAAAGACTAGGGAATAGATATACTGACAATCACTGGGAACTTAGAAACCTTACTGCCAACCTGGTTTCTTCAATCTGCAAAAGATTTAGACATTTTTGTCATAATCTTCAGCCACGTTTGACAAGTACCTTGCTTCACGCTTTCTTGGACCCAACCAAAGCATTACCCCAACATTATGGCGCAATTCAAGGGCTAGCAGCTCTTGGTCCCAATGTGGTTCGCTTACTTATACTACCAAATCTCGATTCGTATATGCAACTTCTTGAGCCAGAAATGATACTTGAGAAGCAAAAGAATGAGATAAAGAGGCATGAAGCTTGGCGTGTCTATGGGGCCTTTGCTGCTCATCCTGTTTGGAAGTGCAATGGAAGGATTGCAACAACAATGACAAATGTTGGCAACCTTCATAGCTATACAATGAACACCATGCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

285

Amino Acids

32.43

Weight (kDa)

9.35

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF	PF02969	1 - 43	3.2e-15	TATA box binding protein associated factor (TAF)
TAF6_C	PF07571	41 - 221	8.1e-62	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	516
Acc36I	ACCTGC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccII	CGCG	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	2 cut(s)	104, 547
AfiI	CCNNNNNNNGG	2 cut(s)	226, 852
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	6 cut(s)	182, 298, 350, 371, 492, 608
AjnI	CCWGG	1 cut(s)	480
AjuI	GAANNNNNNNTTGG	2 cut(s)	649, 681
AluBI	AGCT	6 cut(s)	127, 168, 198, 620, 737, 831
AluI	AGCT	6 cut(s)	127, 168, 198, 620, 737, 831
Alw26I	GTCTC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	279
Aor13HI	TCCGGA	1 cut(s)	336
AoxI	GGCC	1 cut(s)	753
ApeKI	GCWGC	3 cut(s)	124, 617, 761
AspLEI	GCGC	2 cut(s)	40, 602
AspS9I	GGNCC	3 cut(s)	568, 626, 753
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	79
AsuNHI	GCTAGC	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	279
AvaII	GGWCC	2 cut(s)	568, 626
BanII	GRGCYC	2 cut(s)	153, 219
BbvI	GCAGC	3 cut(s)	136, 629, 748
BccI	CCATC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	4 cut(s)	165, 314, 428, 614
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	3 cut(s)	125, 618, 762
BlsI	GCNGC	3 cut(s)	126, 619, 763
Bme1390I	CCNGG	2 cut(s)	107, 482
Bme18I	GGWCC	2 cut(s)	568, 626
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	3 cut(s)	568, 626, 753
BmiI	GGNNCC	6 cut(s)	218, 231, 341, 570, 628, 754
BmrFI	CCNGG	2 cut(s)	107, 482
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	381
BmtI	GCTAGC	1 cut(s)	617
BmuI	ACTGGG	1 cut(s)	463
BpuEI	CTTGAG	2 cut(s)	704, 722
BpuMI	CCSGG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 852
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	790
BseAI	TCCGGA	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	482
BseGI	GGATG	2 cut(s)	220, 766
BseLI	CCNNNNNNNGG	2 cut(s)	226, 852
BseMI	GCAATG	1 cut(s)	790
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	3 cut(s)	136, 629, 748
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	755
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	106, 337
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	226, 852
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	755
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	153, 219
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	117, 141, 272
Bsp68I	TCGCGA	1 cut(s)	114
BspANI	GGCC	1 cut(s)	755
BspEI	TCCGGA	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	6 cut(s)	218, 231, 341, 570, 628, 754
BspMI	ACCTGC	1 cut(s)	416
BspOI	GCTAGC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	790
BsrI	ACTGG	1 cut(s)	458
BssMI	GATC	3 cut(s)	117, 141, 272
Bst2UI	CCWGG	1 cut(s)	482
BstBAI	YACGTR	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	220, 766
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	40, 602
BstKTI	GATC	3 cut(s)	120, 144, 275
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	117, 141, 272
BstMWI	GCNNNNNNNGC	1 cut(s)	761
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	105, 480
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	136, 629, 748
BstXI	CCANNNNNNTGG	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	755
BtsCI	GGATG	2 cut(s)	220, 766
BtsIMutI	CAGTG	1 cut(s)	451
BtuMI	TCGCGA	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	615
CfoI	GCGC	2 cut(s)	40, 602
Cfr13I	GGNCC	3 cut(s)	568, 626, 753
CseI	GACGC	1 cut(s)	317
CsiI	ACCWGGT	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	103, 546
CviAII	CATG	4 cut(s)	121, 365, 731, 847
CviQI	GTAC	2 cut(s)	103, 546
DdeI	CTNAG	1 cut(s)	461
DpnI	GATC	3 cut(s)	119, 143, 274
DpnII	GATC	3 cut(s)	117, 141, 272
DrdI	GACNNNNNNGTC	1 cut(s)	516
DseDI	GACNNNNNNGTC	1 cut(s)	516
Eco24I	GRGCYC	2 cut(s)	153, 219
Eco47I	GGWCC	2 cut(s)	568, 626
Eco57I	CTGAAG	1 cut(s)	512
Eco88I	CYCGRG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	480
EcoT38I	GRGCYC	2 cut(s)	153, 219
FaeI	CATG	4 cut(s)	124, 368, 734, 850
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	4 cut(s)	120, 364, 730, 846
Fnu4HI	GCNGC	3 cut(s)	125, 618, 762
FokI	GGATG	2 cut(s)	207, 753
FriOI	GRGCYC	2 cut(s)	153, 219
Fsp4HI	GCNGC	3 cut(s)	125, 618, 762
FspBI	CTAG	4 cut(s)	165, 314, 428, 614
GlaI	GCGC	2 cut(s)	39, 601
GluI	GCNGC	3 cut(s)	125, 618, 762
HaeIII	GGCC	1 cut(s)	755
HapII	CCGG	2 cut(s)	106, 337
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	40, 602
Hin1II	CATG	4 cut(s)	124, 368, 734, 850
Hin6I	GCGC	2 cut(s)	38, 600
HinP1I	GCGC	2 cut(s)	38, 600
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	2 cut(s)	209, 665
HpaII	CCGG	2 cut(s)	106, 337
HphI	GGTGA	1 cut(s)	79
Hpy188III	TCNNGA	5 cut(s)	68, 113, 337, 662, 683
HpyAV	CCTTC	4 cut(s)	353, 405, 783, 833
HpyCH4IV	ACGT	3 cut(s)	9, 242, 535
HpyCH4V	TGCA	8 cut(s)	77, 124, 419, 498, 676, 783, 797, 850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	761
HpyF3I	CTNAG	1 cut(s)	461
HpySE526I	ACGT	3 cut(s)	9, 242, 535
Hsp92II	CATG	4 cut(s)	124, 368, 734, 850
HspAI	GCGC	2 cut(s)	38, 600
Kpn2I	TCCGGA	1 cut(s)	336
Kzo9I	GATC	3 cut(s)	117, 141, 272
LmnI	GCTCC	2 cut(s)	222, 339
Lsp1109I	GCAGC	3 cut(s)	136, 629, 748
LweI	GCATC	1 cut(s)	381
MabI	ACCWGGT	1 cut(s)	480
MaeI	CTAG	4 cut(s)	165, 314, 428, 614
MaeII	ACGT	3 cut(s)	9, 242, 535
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	119, 143, 274
MboI	GATC	3 cut(s)	117, 141, 272
MboII	GAAGA	5 cut(s)	151, 194, 338, 480, 518
MfeI	CAATTG	2 cut(s)	24, 386
MhlI	GDGCHC	2 cut(s)	153, 219
MluCI	AATT	6 cut(s)	24, 58, 292, 301, 386, 603
MnlI	CCTC	4 cut(s)	22, 320, 366, 720
MroI	TCCGGA	1 cut(s)	336
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	106, 337
MspR9I	CCNGG	2 cut(s)	107, 482
MunI	CAATTG	2 cut(s)	24, 386
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	761
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	3 cut(s)	117, 141, 272
NheI	GCTAGC	1 cut(s)	613
NlaIII	CATG	4 cut(s)	124, 368, 734, 850
NlaIV	GGNNCC	6 cut(s)	218, 231, 341, 570, 628, 754
NruI	TCGCGA	1 cut(s)	114
NspI	RCATGY	1 cut(s)	368
PciI	ACATGT	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	209, 665
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	126, 619, 763
Ppu21I	YACGTR	1 cut(s)	243
PscI	ACATGT	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	6 cut(s)	218, 231, 341, 570, 628, 754
PspPI	GGNCC	3 cut(s)	568, 626, 753
PsrI	GAACNNNNNNTAC	2 cut(s)	363, 395
RruI	TCGCGA	1 cut(s)	114
RsaI	GTAC	2 cut(s)	104, 547
RsaNI	GTAC	2 cut(s)	103, 546
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	3 cut(s)	125, 618, 762
Sau3AI	GATC	3 cut(s)	117, 141, 272
Sau96I	GGNCC	3 cut(s)	568, 626, 753
ScrFI	CCNGG	2 cut(s)	107, 482
SduI	GDGCHC	2 cut(s)	153, 219
SexAI	ACCWGGT	1 cut(s)	480
SfaNI	GCATC	1 cut(s)	381
SinI	GGWCC	2 cut(s)	568, 626
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	2 cut(s)	683, 701
SmoI	CTYRAG	2 cut(s)	683, 701
Sse9I	AATT	6 cut(s)	24, 58, 292, 301, 386, 603
SspMI	CTAG	4 cut(s)	165, 314, 428, 614
StyD4I	CCNGG	2 cut(s)	105, 480
TaiI	ACGT	3 cut(s)	12, 245, 538
TaqI	TCGA	2 cut(s)	99, 663
TasI	AATT	6 cut(s)	24, 58, 292, 301, 386, 603
TfiI	GAWTC	2 cut(s)	209, 665
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	1 cut(s)	458
TseI	GCWGC	3 cut(s)	124, 617, 761
TspDTI	ATGAA	3 cut(s)	747, 815, 854
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	458
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	568, 626
XceI	RCATGY	1 cut(s)	368
XspI	CTAG	4 cut(s)	165, 314, 428, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.