Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000796

Physical Location & Seq

Genomic Coordinates Reverse (-)

36964446 .. 36965784

Gene Structure 1339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32057

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTTAACAGTGCAAACGCTTATGTGCCTAAAATGCTATTAAGGAGGCCATCAAATGCATGTGACACACAGACTGTTTTGACAACCGATGATGTGGATCGCGCGCTTAAATTAAGAAATGTGGAGCCAATATATGGCTTTGGTTCTGGAGATCCTTTGGGATTCAAGAGAGCTGCTGGACATAGGGATTTGTTCTGCATAGATGACAAGGATGTTGAATTTAAAGATGTGATTGAGGCACCTTTGCCAAAAGCACCATTTGATGTATCCGTTACTGCTCACTGGCTGGCAATCGAAGGTTTTCAACCTGCAATTCCAGAAAATGCTCCAGTGAAGGTATCCTGCCTAAACTTAGCGCTTGCTGTATACTCTGATGTCCAAAAATCTGAATACAAGGAAGATGGACTTCCTGTAGTCGTTAAATTGCCCATTAAGCATTTACTATCAAGGGAACTTCAGCTTTACTTTGAGAAGATCATAGGGCTCAATCAAAAGTCTAGCTCAACCCTTTTTGAAGAAGCATTAGTGAGCTTGGCAACAGATTCAGGGCTCCATCCGTTGGTTCCTTACTTTACGTGCTTGTTGCTGATGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

198

Amino Acids

21.99

Weight (kDa)

5.58

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF6_C	PF07571	145 - 192	1.9e-12	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04950 AT1G04950 AT1G04950
fragaria_vesca	FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_3g23640 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670 FvH4_6g41670
malus_domestica	MD03G1192300.v1.1 MD09G1117900.v1.1 MD11G1208800.v1.1 MD17G1109200.v1.1
prunus_persica	Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.3G206000_v2.0.a1 Prupe.4G224900_v2.0.a1 Prupe.4G224900_v2.0.a1
pyrus_communis	pycom03g14470 pycom09g04320 pycom17g10170
rosa_chinensis	RchiOBHm_Chr2g0157381 RchiOBHm_Chr5g0041701 RchiOBHm_Chr5g0042101 RchiOBHm_Chr5g0042151 RchiOBHm_Chr5g0042161
rosa_laevigata	RLG00000020985 RLG00000034090
rosa_multiflora	Rmu_co8147136.1_g000001 Rmu_co8499353.1_g000001 Rmu_sc0000126.1_g000005 Rmu_sc0000126.1_g000020 Rmu_sc0000195.1_g000015 Rmu_sc0000861.1_g000026 Rmu_sc0001715.1_g000039 Rmu_sc0005255.1_g000023
rosa_roxburghii	Rroxscaffold_1G00038570 Rroxscaffold_1G00038810 Rroxscaffold_2G00092240
rosa_rugosa	Rorug02G0460600 Rorug02G0460700 Rorug02G0460800 Rorug05G0194900 Rorug05G0195000
rosa_samantha	Rh2AG525200 Rh2BG539300 Rh2CG509900 Rh2DG548400 Rh5AG280000 Rh5BG285500 Rh5BG288600 Rh5BG288900 Rh5CG317700 Rh5CG320200 Rh5DG294300 Rh5DG297700 Rh5DG298100 Rh5DG298200
rosa_wichuraiana	Rw0G001450 Rw2G043470 Rw5G026380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	238
AccB7I	CCANNNNNTGG	2 cut(s)	134, 559
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	2 cut(s)	102, 104
AclWI	GGATC	2 cut(s)	105, 146
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	440
AfeI	AGCGCT	1 cut(s)	357
AfiI	CCNNNNNNNGG	2 cut(s)	134, 559
AgsI	TTSAA	4 cut(s)	166, 218, 305, 515
AluBI	AGCT	4 cut(s)	173, 460, 501, 531
AluI	AGCT	4 cut(s)	173, 460, 501, 531
AlwI	GGATC	2 cut(s)	105, 146
Aor51HI	AGCGCT	1 cut(s)	357
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	300
AspLEI	GCGC	3 cut(s)	104, 106, 358
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	2 cut(s)	486, 552
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	3 cut(s)	58, 395, 561
BciVI	GTATCC	2 cut(s)	277, 349
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	2 cut(s)	277, 349
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmiI	GGNNCC	4 cut(s)	126, 240, 551, 564
BpmI	CTGGAG	2 cut(s)	168, 312
BsaAI	YACGTR	1 cut(s)	576
BsaBI	GATNNNNATC	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 559
Bse1I	ACTGG	2 cut(s)	287, 329
Bse8I	GATNNNNATC	1 cut(s)	96
BseGI	GGATG	2 cut(s)	217, 553
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	134, 559
BseNI	ACTGG	2 cut(s)	287, 329
BsePI	GCGCGC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	2 cut(s)	102, 104
BshFI	GGCC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	134, 559
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	486, 552
Bsp143I	GATC	3 cut(s)	97, 151, 474
BspANI	GGCC	1 cut(s)	49
BspFNI	CGCG	2 cut(s)	102, 104
BspLI	GGNNCC	4 cut(s)	126, 240, 551, 564
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	105, 146
BspT107I	GGYRCC	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	287, 329
BssHII	GCGCGC	1 cut(s)	102
BssMI	GATC	3 cut(s)	97, 151, 474
BssNAI	GTATAC	1 cut(s)	367
Bst1107I	GTATAC	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	11, 76
BstBAI	YACGTR	1 cut(s)	576
BstC8I	GCNNGC	3 cut(s)	104, 288, 360
BstDEI	CTNAG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	217, 553
BstFNI	CGCG	2 cut(s)	102, 104
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	3 cut(s)	104, 106, 358
BstKTI	GATC	3 cut(s)	100, 154, 477
BstMBI	GATC	3 cut(s)	97, 151, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 433
BstNSI	RCATGY	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	411
BstUI	CGCG	2 cut(s)	102, 104
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BstZ17I	GTATAC	1 cut(s)	367
BsuI	GTATCC	2 cut(s)	277, 349
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	217, 553
BtsIMutI	CAGTG	3 cut(s)	16, 280, 336
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	3 cut(s)	104, 288, 360
CfoI	GCGC	3 cut(s)	104, 106, 358
CviAII	CATG	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	3 cut(s)	99, 153, 476
DpnII	GATC	3 cut(s)	97, 151, 474
DraI	TTTAAA	1 cut(s)	223
Eco24I	GRGCYC	2 cut(s)	486, 552
Eco47III	AGCGCT	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	440
EcoT22I	ATGCAT	1 cut(s)	61
EcoT38I	GRGCYC	2 cut(s)	486, 552
FaeI	CATG	1 cut(s)	63
FaiI	YATR	8 cut(s)	24, 61, 133, 135, 183, 200, 367, 479
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	1 cut(s)	59
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	2 cut(s)	224, 540
FriOI	GRGCYC	2 cut(s)	486, 552
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	3 cut(s)	103, 105, 357
GluI	GCNGC	1 cut(s)	174
GsuI	CTGGAG	2 cut(s)	168, 312
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	49
HhaI	GCGC	3 cut(s)	104, 106, 358
Hin1II	CATG	1 cut(s)	63
Hin6I	GCGC	3 cut(s)	102, 104, 356
HinP1I	GCGC	3 cut(s)	102, 104, 356
HinfI	GANTC	2 cut(s)	162, 542
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	373, 388
Hpy188III	TCNNGA	3 cut(s)	147, 166, 317
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	2 cut(s)	290, 328
HpyCH4III	ACNGT	2 cut(s)	11, 76
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	4 cut(s)	14, 59, 198, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 433
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	1 cut(s)	63
HspAI	GCGC	3 cut(s)	102, 104, 356
Kzo9I	GATC	3 cut(s)	97, 151, 474
LmnI	GCTCC	3 cut(s)	124, 331, 555
Lsp1109I	GCAGC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	2 cut(s)	62, 271
MalI	GATC	3 cut(s)	99, 153, 476
MboI	GATC	3 cut(s)	97, 151, 474
MboII	GAAGA	3 cut(s)	410, 484, 527
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	486, 552
MluCI	AATT	4 cut(s)	110, 218, 312, 422
MnlI	CCTC	3 cut(s)	39, 229, 585
Mph1103I	ATGCAT	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	7 cut(s)	6, 41, 108, 113, 222, 420, 432
MvnI	CGCG	2 cut(s)	102, 104
MwoI	GCNNNNNNNGC	2 cut(s)	34, 433
NdeII	GATC	3 cut(s)	97, 151, 474
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	4 cut(s)	126, 240, 551, 564
NmuCI	GTSAC	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	61
NspI	RCATGY	1 cut(s)	63
PauI	GCGCGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	162, 542
PflMI	CCANNNNNTGG	2 cut(s)	134, 559
PkrI	GCNGC	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	576
PspN4I	GGNNCC	4 cut(s)	126, 240, 551, 564
PsuI	RGATCY	1 cut(s)	151
PteI	GCGCGC	1 cut(s)	102
SaqAI	TTAA	7 cut(s)	6, 41, 108, 113, 222, 420, 432
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	3 cut(s)	97, 151, 474
SduI	GDGCHC	2 cut(s)	486, 552
SfcI	CTRYAG	1 cut(s)	411
Sse9I	AATT	4 cut(s)	110, 218, 312, 422
SspMI	CTAG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	11, 76
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	110, 218, 312, 422
TfiI	GAWTC	2 cut(s)	162, 542
Tru1I	TTAA	7 cut(s)	6, 41, 108, 113, 222, 420, 432
Tru9I	TTAA	7 cut(s)	6, 41, 108, 113, 222, 420, 432
TscAI	CASTG	3 cut(s)	16, 287, 336
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	62
TspGWI	ACGGA	2 cut(s)	259, 546
TspRI	CASTG	3 cut(s)	16, 287, 336
Van91I	CCANNNNNTGG	2 cut(s)	134, 559
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.